BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0342.0038.p (214 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00098365.1| hypothetical protein [Desulfitobacterium hafn... 175 6e-43 ref|NP_603933.1| Hypothetical protein [Fusobacterium nucleatum s... 136 3e-31 ref|ZP_00144572.1| hypothetical protein [Fusobacterium nucleatum... 133 3e-30 ref|NP_971672.1| conserved hypothetical protein [Treponema denti... 122 5e-27 ref|NP_347391.1| Multimeric flavodoxin WrbA family protein, dive... 96 4e-19 >ref|ZP_00098365.1| hypothetical protein [Desulfitobacterium hafniense] Length = 213 Score = 175 bits (444), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 104/215 (48%), Positives = 137/215 (63%), Gaps = 6/215 (2%) Query: 1 MKIALINGSPKVKKSNSAIMLGILEPLIRSGHEITTYHLNKKPLTPEQYRELCRMDVLVI 60 +KIALINGSPK K S S +L L L+ +IT Y K L+ E +L DV V+ Sbjct: 2 LKIALINGSPKAKNSASEAVLQALRTLVEDS-KITEYGFRKPQLSLEDLEQLEEQDVWVL 60 Query: 61 AFPLYVDGIPSHLFRMLVALEEYMKAERE--GDIYVYALINNGFFEGQQNHIALEIIQNW 118 AFPLYVDGIPSHL L LE + KA+ + ++ VY L+N GF+EG+Q +ALE+++NW Sbjct: 61 AFPLYVDGIPSHLLSCLAQLENHFKAKAQPGSEVVVYCLVNCGFYEGEQCGLALEMVENW 120 Query: 119 CSRCGLHFGQGLGQGAGEMMGFLEKVPVGRGPLKNLGHAMQGLAGKWHIHSRSVDESMLF 178 C+R G +GQGLG GAG M+ L+ VP G GP KNLG A+Q LA +I R+ + Sbjct: 121 CARAGRQWGQGLGIGAGGMLPTLKNVPAGSGPKKNLGKALQTLAA--NIVHRTGGAPVFI 178 Query: 179 SPNFPRFAWKFTATHSFWNATAKKNGLKKKDILRR 213 + NFPRFA+KF A + W K NGLKK+++ RR Sbjct: 179 TANFPRFAYKF-AAEAGWRQMVKANGLKKEELFRR 212 >ref|NP_603933.1| Hypothetical protein [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gb|AAL95232.1| Hypothetical protein [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 212 Score = 136 bits (343), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 82/214 (38%), Positives = 126/214 (58%), Gaps = 6/214 (2%) Query: 1 MKIALINGSPKVKKSNSAIMLGILEPLIRSGHEITTYHLNKKPLTPEQYRELCRMDVLVI 60 MKI +INGSP+ KKSNS I+ L I+ +EI + L + ++ D+L+ Sbjct: 5 MKITIINGSPRFKKSNSEILKNYLLNFIKE-NEINEFFSFSIKLDDDIKTDIYNSDILIF 63 Query: 61 AFPLYVDGIPSHLFRMLVALEEYMKAEREGDIYVYALINNGFFEGQQNHIALEIIQNWCS 120 FPLYVD IP++L +LV E+ + IY ++NNGFFEG QNH+A+ I+ W Sbjct: 64 IFPLYVDSIPANLLDLLVRFEDENVINSKTKIY--CIVNNGFFEGVQNHLAISQIRCWSK 121 Query: 121 RCGLHFGQGLGQGAGEMMGFLEKVPVGRGPLKNLGHAMQGLAGKWHIHSRSVDESMLFSP 180 + +GQG+G G GE++ L+KVP+G+GPLKNLG ++ + +I S DE + +P Sbjct: 122 KVNAQWGQGIGVGGGELLSHLKKVPLGQGPLKNLGIILEKFSK--NILSLKGDEDIYINP 179 Query: 181 NFPRFAWKFTATHSFWNATAKKNGLKKKDILRRL 214 N+P+ + A S W +KN LK +D+ +++ Sbjct: 180 NYPKILYFLQANIS-WFIEGRKNKLKFRDLFKKI 212 >ref|ZP_00144572.1| hypothetical protein [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gb|EAA23840.1| hypothetical protein [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 217 Score = 133 bits (334), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 81/214 (37%), Positives = 123/214 (57%), Gaps = 6/214 (2%) Query: 1 MKIALINGSPKVKKSNSAIMLGILEPLIRSGHEITTYHLNKKPLTPEQYRELCRMDVLVI 60 M+I +INGSP++KKSNS I+ L I+ ++I Y L + D+L+ Sbjct: 5 MEITIINGSPRLKKSNSEILKNYLLNFIKE-NKINEYFSFSTKLDNNIKTNIYNSDILIF 63 Query: 61 AFPLYVDGIPSHLFRMLVALEEYMKAEREGDIYVYALINNGFFEGQQNHIALEIIQNWCS 120 FPLYVD IPS+L +LV E + IY ++NNGFFEG QNH+A+ I+ W Sbjct: 64 IFPLYVDSIPSNLLSLLVNFENEKLINSKTKIY--CIVNNGFFEGVQNHLAISQIRCWSK 121 Query: 121 RCGLHFGQGLGQGAGEMMGFLEKVPVGRGPLKNLGHAMQGLAGKWHIHSRSVDESMLFSP 180 + +GQG+G G GE++ L+KVP+G GPLKNLG ++ + +I +E + +P Sbjct: 122 KVNAQWGQGIGVGGGELLSHLKKVPLGNGPLKNLGITLEKFSK--NILLLKSNEDIYINP 179 Query: 181 NFPRFAWKFTATHSFWNATAKKNGLKKKDILRRL 214 N+P+ + A S W A+KN LK +D+ +++ Sbjct: 180 NYPKILYFLQANIS-WFIIARKNKLKFRDLFKKI 212 >ref|NP_971672.1| conserved hypothetical protein [Treponema denticola ATCC 35405] gb|AAS11553.1| conserved hypothetical protein [Treponema denticola ATCC 35405] Length = 211 Score = 122 bits (306), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 78/213 (36%), Positives = 116/213 (54%), Gaps = 5/213 (2%) Query: 1 MKIALINGSPKVKKSNSAIMLGILEPLIRSGHEITTYHLNKKPLTPEQYRELCRMDVLVI 60 MKIALINGSPK K S S I+L L+ + E+ + L+ + E EL ++D V Sbjct: 1 MKIALINGSPKTKNSASGILLEDLKKYLEKNAEVVNFELHLSEIPKEVIEELKKIDTWVF 60 Query: 61 AFPLYVDGIPSHLFRMLVALEEYMKAEREGDIYVYALINNGFFEGQQNHIALEIIQNWCS 120 A+PLYVDGIP HL L+ LEE + + D+++Y ++N GF+EG +AL+I++NWC Sbjct: 61 AYPLYVDGIPGHLLSCLIQLEEV--SIHKSDLHIYGIVNCGFYEGIHGKLALQILENWCL 118 Query: 121 RCGLHFGQGLGQGAGEMMGFLEKVPVGRGPLKNLGHAMQGLAGKWHIHSRSVDESMLFSP 180 + G +G G+G G G + + K G GP + A+ L+ I + ++ S Sbjct: 119 KAGFIWGGGIGVGCGGALVGMPKTAAGHGPKAAIDKAVAKLSDI--IIKGEIQKNNYVSL 176 Query: 181 NFPRFAWKFTATHSFWNATAKKNGLKKKDILRR 213 FPRF +K W K NG K KD+ ++ Sbjct: 177 AFPRFLYKIVGQMR-WRKLIKANGGKAKDLGKK 208 >ref|NP_347391.1| Multimeric flavodoxin WrbA family protein, diverged or disrupted [Clostridium acetobutylicum] pir||H96992 multimeric flavodoxin WrbA family protein, diverged or disrupted [imported] - Clostridium acetobutylicum gb|AAK78731.1| Multimeric flavodoxin WrbA family protein, diverged or disrupted [Clostridium acetobutylicum] Length = 222 Score = 96.3 bits (238), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 68/214 (31%), Positives = 113/214 (52%), Gaps = 16/214 (7%) Query: 3 IALINGSPKVKKSNSAIMLGILEPLIRSGHEITTYHLNK----KPLTPEQYRELCRMDVL 58 I INGSP+ KK+NS + L +++ + S + T Y+++ K ++ L D + Sbjct: 4 ICFINGSPRSKKANSTLYLNLIDKSLDSKNY-TKYYIDTTSSIKGDLESTFKTLLDADYI 62 Query: 59 VIAFPLYVDGIPSHLFRMLVALEEYMKAER--EGDIYVYALINNGFFEGQQNHIALEIIQ 116 ++AFPLYV +PS L R L Y+K + +YA++N GF + + N AL+I+ Sbjct: 63 ILAFPLYVYSMPSLLVRFLEDYYIYLKNKDTISQKTNLYAVVNCGFPDAKMNVEALKIVF 122 Query: 117 NWCSRCGLHFGQGLGQGAGEMMGFLEKVPVGRGPLKNLGHAMQGLAGK--WHIHSR-SVD 173 N C + ++F G+G GAGE + F + P+ L L + K + I ++ S++ Sbjct: 123 NCCKKLNINFRFGIGIGAGEFVNFSKNNPL----LNKLSSCVYKSINKITYDIENQVSIE 178 Query: 174 ESMLF-SPNFPRFAWKFTATHSFWNATAKKNGLK 206 + +F +P PR + F H FW AK+NG+K Sbjct: 179 INNIFVNPKIPRRLF-FIFGHIFWKKWAKRNGIK 211 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.323 0.140 0.434 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 337,215,572 Number of extensions: 14426338 Number of successful extensions: 29597 Number of sequences better than 1.0e-05: 5 Number of HSP's gapped: 29586 Number of HSP's successfully gapped: 5 Length of query: 214 Length of database: 757,237,578 Length adjustment: 120 Effective length of query: 94 Effective length of database: 431,425,698 Effective search space: 40554015612 Effective search space used: 40554015612 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 123 (52.0 bits)