BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0342.0027.p (343 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_010829.1| Hypothetical ORF; Ydr540cp [Saccharomyces cerev... 168 2e-40 ref|NP_813844.1| conserved hypothetical protein [Enterococcus fa... 163 5e-39 ref|ZP_00063103.1| COG4283: Uncharacterized conserved protein [L... 151 2e-35 ref|ZP_00122436.1| COG4283: Uncharacterized conserved protein [H... 136 6e-31 ref|NP_689096.1| conserved hypothetical protein [Streptococcus a... 136 8e-31 >ref|NP_010829.1| Hypothetical ORF; Ydr540cp [Saccharomyces cerevisiae] pir||S62019 hypothetical protein YDR540c - yeast (Saccharomyces cerevisiae) gb|AAB64982.1| Ydr540cp [Saccharomyces cerevisiae] Length = 179 Score = 168 bits (426), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 85/162 (52%), Positives = 113/162 (69%) Query: 5 EYSSKKDLLEAIHSKYVLLDAEFEDVDTSQKDVRIPGVDKTPAEIIAYQLGWLQLVMGWD 64 EY+SKK+L E I KY DAEFE + SQKD ++ VD+TP+E ++YQLGW+ L++ W+ Sbjct: 3 EYTSKKELKEEIEKKYEKYDAEFETISESQKDEKVETVDRTPSENLSYQLGWVNLLLEWE 62 Query: 65 KDEREGRAVIMPSPGYKWNQLGGLYQSFYEAYAEYSLPELRDLFRQIEQQWLDWVGTLTE 124 E G V P+PGYKWN LGGLYQSFY+ Y YS+ E R R+ + W+ TL++ Sbjct: 63 AKEIAGYNVETPAPGYKWNNLGGLYQSFYKKYGIYSIKEQRAKLREAVNEVYKWISTLSD 122 Query: 125 EELFIQGIRQWTGSKENWPMARWIHINSVAPFTSFRAKIRKW 166 +ELF G R+W +K WP+ +WIHIN+VAPFT+FR KIRKW Sbjct: 123 DELFQAGNRKWATTKAMWPVYKWIHINTVAPFTNFRGKIRKW 164 >ref|NP_813844.1| conserved hypothetical protein [Enterococcus faecalis V583] gb|AAO79916.1| conserved hypothetical protein [Enterococcus faecalis V583] Length = 169 Score = 163 bits (413), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 79/161 (49%), Positives = 106/161 (65%) Query: 6 YSSKKDLLEAIHSKYVLLDAEFEDVDTSQKDVRIPGVDKTPAEIIAYQLGWLQLVMGWDK 65 Y SK+ L+EAI AEF ++ + KD RI V KTP+E +AYQLGWL L++ W++ Sbjct: 4 YESKEALIEAIQIASQKYLAEFAEIPETLKDHRIETVAKTPSENLAYQLGWLNLLLSWEE 63 Query: 66 DEREGRAVIMPSPGYKWNQLGGLYQSFYEAYAEYSLPELRDLFRQIEQQWLDWVGTLTEE 125 E+ G V P+ GYKWNQLG LYQSFY+ Y + SL + ++ L W+ +L+E+ Sbjct: 64 QEQRGLTVQTPAEGYKWNQLGALYQSFYQTYGQMSLESQLIALQDTLEKLLHWIDSLSED 123 Query: 126 ELFIQGIRQWTGSKENWPMARWIHINSVAPFTSFRAKIRKW 166 ELF+ R W +K WP+ +WIHINSVAPFTSFR +IRKW Sbjct: 124 ELFLPQQRAWATTKAQWPLWKWIHINSVAPFTSFRTQIRKW 164 >ref|ZP_00063103.1| COG4283: Uncharacterized conserved protein [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 171 Score = 151 bits (381), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 77/166 (46%), Positives = 105/166 (63%), Gaps = 2/166 (1%) Query: 1 MASYEYSSKKDLLEAIHSKYVLLDAEFEDVDTSQKDVRIPGVDKTPAEIIAYQLGWLQLV 60 M SYE SK L EAI + Y EF ++ S + RI V +TP+E I+YQLGW+ + Sbjct: 1 MKSYE--SKAALNEAIKTNYKKYIDEFTNIPNSLSNKRIQNVARTPSENISYQLGWITAL 58 Query: 61 MGWDKDEREGRAVIMPSPGYKWNQLGGLYQSFYEAYAEYSLPELRDLFRQIEQQWLDWVG 120 + W+KDE G+ V +P+ GY WN LGGLYQSFY+ YA+ SL E +L + + + V Sbjct: 59 LNWEKDEIAGQDVFVPAKGYTWNNLGGLYQSFYDDYADLSLEEQINLLNRRVIELCELVS 118 Query: 121 TLTEEELFIQGIRQWTGSKENWPMARWIHINSVAPFTSFRAKIRKW 166 +L ++ LF R+W + WP+ +WIHINSVAPF +FR KIRKW Sbjct: 119 SLPDDILFEPNKRKWATTPAQWPVWKWIHINSVAPFKTFRTKIRKW 164 >ref|ZP_00122436.1| COG4283: Uncharacterized conserved protein [Haemophilus somnus 129PT] Length = 182 Score = 136 bits (343), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 68/164 (41%), Positives = 101/164 (61%), Gaps = 3/164 (1%) Query: 6 YSSKKDLLEAIHSKYVLLDAEFEDVDTSQKDVRIPGVDKTPAEIIAYQLGWLQLVMGWDK 65 Y +K++L I+ + EF+++ + KD ++ VD+TPAE +AYQ+GW LV+ W+K Sbjct: 14 YKNKEELKTEINKAFKKYILEFDNIPETLKDKKVDKVDRTPAENLAYQVGWTSLVLKWEK 73 Query: 66 DEREGRAVIMPSPGYKWNQLGGLYQSFYEAYAEYSLPELRDLFRQIEQQWLDWVGTLTEE 125 DER+G V PS +KWNQLG LYQ F + YA SL EL+ + + +L+EE Sbjct: 74 DERKGLQVKTPSDEFKWNQLGQLYQWFTDTYAHLSLQELKAKLNENINSIYAMIDSLSEE 133 Query: 126 ELFIQGIRQWTG---SKENWPMARWIHINSVAPFTSFRAKIRKW 166 ELF +R+W W + ++IH+N+VAPF +FR K+RKW Sbjct: 134 ELFEPHMRKWADEATKTATWKVYKFIHVNTVAPFGTFRTKVRKW 177 >ref|NP_689096.1| conserved hypothetical protein [Streptococcus agalactiae 2603V/R] gb|AAN00969.1| conserved hypothetical protein [Streptococcus agalactiae 2603V/R] Length = 173 Score = 136 bits (342), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 69/164 (42%), Positives = 96/164 (58%), Gaps = 3/164 (1%) Query: 6 YSSKKDLLEAIHSKYVLLDAEFEDVDTSQKDVRIPGVDKTPAEIIAYQLGWLQLVMGWDK 65 YS K +L E + Y AEF D+ KD+RI VD+TPAE +AYQ+GW L++ W+ Sbjct: 4 YSDKNELKEEVLKSYKKYIAEFNDIPEKLKDLRIDEVDRTPAENLAYQVGWTTLILKWES 63 Query: 66 DEREGRAVIMPSPGYKWNQLGGLYQSFYEAYAEYSLPELRDLFRQIEQQWLDWVGTLTEE 125 DE+ G V P+ +KWNQLG LYQ F E YA ++ EL + + ++++E Sbjct: 64 DEQSGLEVKTPTETFKWNQLGELYQHFTETYASLTIKELTAQLNDNVDAIGNMIDSMSDE 123 Query: 126 ELFIQGIRQWTGSKEN---WPMARWIHINSVAPFTSFRAKIRKW 166 LF +R W S W + ++IHIN+VAPF +FR KIRKW Sbjct: 124 VLFKPHMRNWADSATKNAVWEVYKFIHINTVAPFGTFRTKIRKW 167 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.319 0.134 0.423 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 377,393,301 Number of extensions: 17317459 Number of successful extensions: 28342 Number of sequences better than 1.0e-05: 19 Number of HSP's gapped: 28325 Number of HSP's successfully gapped: 19 Length of query: 343 Length of database: 757,237,578 Length adjustment: 126 Effective length of query: 217 Effective length of database: 415,135,104 Effective search space: 90084317568 Effective search space used: 90084317568 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 126 (53.1 bits)