BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0342.0016.p (119 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00059696.1| COG3682: Predicted transcriptional regulator ... 139 2e-32 ref|ZP_00060692.1| COG3682: Predicted transcriptional regulator ... 137 7e-32 ref|ZP_00097243.1| COG3682: Predicted transcriptional regulator ... 127 6e-29 ref|ZP_00098405.1| hypothetical protein [Desulfitobacterium hafn... 116 2e-25 ref|ZP_00060092.1| COG3682: Predicted transcriptional regulator ... 94 9e-19 >ref|ZP_00059696.1| COG3682: Predicted transcriptional regulator [Clostridium thermocellum ATCC 27405] Length = 132 Score = 139 bits (350), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 65/116 (56%), Positives = 89/116 (76%) Query: 1 MEPYKLFDAEYKFVSLIWENEPINSTGLVKLCHSKLGWKKSTTYTVLRKLCERGILQNEN 60 M+ YKL ++E KF LIW+NEPI S LVKLC ++ WKKSTTYTVL+KLCE+GI QN++ Sbjct: 13 MKEYKLAESEKKFAELIWQNEPIGSGELVKLCEKEMNWKKSTTYTVLKKLCEKGIFQNKD 72 Query: 61 AVVSALIKREEAQRYESEALLDKAFDGSLPKFLTAFLGNRQISPKEAEQLKRIIEE 116 AVV++LI R+E +S ++ F GSLPKFLTAF+ ++IS ++ E+LKR+I+E Sbjct: 73 AVVTSLISRDEYYSRQSVRFVEDTFGGSLPKFLTAFISGKKISRQQVEELKRLIDE 128 >ref|ZP_00060692.1| COG3682: Predicted transcriptional regulator [Clostridium thermocellum ATCC 27405] Length = 120 Score = 137 bits (345), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 60/114 (52%), Positives = 88/114 (77%) Query: 4 YKLFDAEYKFVSLIWENEPINSTGLVKLCHSKLGWKKSTTYTVLRKLCERGILQNENAVV 63 Y L D+EY+F+ ++W+ EPINS LV++C+ KLGWKKSTT+TV+R LC++ IL NENAVV Sbjct: 3 YYLNDSEYRFMCIVWDVEPINSMELVRICYDKLGWKKSTTFTVIRNLCKKKILSNENAVV 62 Query: 64 SALIKREEAQRYESEALLDKAFDGSLPKFLTAFLGNRQISPKEAEQLKRIIEEA 117 AL+ R Q+ E LDK F GSLP F++AFL +++++ +EAE L+++I++A Sbjct: 63 KALVSRNSIQKQEVRDFLDKKFQGSLPAFISAFLQDKKLTREEAEYLQKLIDDA 116 >ref|ZP_00097243.1| COG3682: Predicted transcriptional regulator [Desulfitobacterium hafniense] Length = 120 Score = 127 bits (320), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 60/116 (51%), Positives = 84/116 (72%) Query: 1 MEPYKLFDAEYKFVSLIWENEPINSTGLVKLCHSKLGWKKSTTYTVLRKLCERGILQNEN 60 M+ KL +E +F LIW++EPI S LVKLC +L WKKSTTYTVL+ LCE+GI QN+ Sbjct: 1 MKEDKLSQSEGRFAELIWQHEPIPSGELVKLCEKELNWKKSTTYTVLKNLCEKGIFQNQQ 60 Query: 61 AVVSALIKREEAQRYESEALLDKAFDGSLPKFLTAFLGNRQISPKEAEQLKRIIEE 116 AVV+ALIK++ +S ++ F GSLP+FLTAF+G R++ + ++LKR+I+E Sbjct: 61 AVVTALIKKDAFYAKQSRRFVEDVFGGSLPRFLTAFIGGRKLRDDQVDELKRLIDE 116 >ref|ZP_00098405.1| hypothetical protein [Desulfitobacterium hafniense] gb|AAL87757.1| unknown [Desulfitobacterium hafniense] Length = 120 Score = 116 bits (290), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 55/116 (47%), Positives = 77/116 (66%) Query: 1 MEPYKLFDAEYKFVSLIWENEPINSTGLVKLCHSKLGWKKSTTYTVLRKLCERGILQNEN 60 ME YKL + E KF LIW + PI S LVKLC +L WKKSTTYT+L++LC+RGI +N+ Sbjct: 1 MEQYKLGEMEQKFADLIWHHAPIPSGELVKLCEKELSWKKSTTYTMLKRLCDRGIFENQK 60 Query: 61 AVVSALIKREEAQRYESEALLDKAFDGSLPKFLTAFLGNRQISPKEAEQLKRIIEE 116 V AL+ RE+ + E L + F GSLP+F AF ++S KE +L+++I++ Sbjct: 61 GRVIALMSREDFTAAQGEQFLSETFGGSLPRFFAAFTRRNKLSAKEINELQQLIDQ 116 >ref|ZP_00060092.1| COG3682: Predicted transcriptional regulator [Clostridium thermocellum ATCC 27405] Length = 117 Score = 94.0 bits (232), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 44/114 (38%), Positives = 78/114 (68%), Gaps = 2/114 (1%) Query: 5 KLFDAEYKFVSLIWENEPINSTGLVKLCHSKLGWKKSTTYTVLRKLCERGILQNENA--V 62 KL+D+E K + +IWENEPI++ + + ++GW K+TTYTV++KL +G ++ E + Sbjct: 3 KLYDSEIKVMEIIWENEPISAKQISLIAAEQIGWNKNTTYTVIKKLESKGYIKREEPGFI 62 Query: 63 VSALIKREEAQRYESEALLDKAFDGSLPKFLTAFLGNRQISPKEAEQLKRIIEE 116 ++LI RE+ R E+++L+DK F GS +A L + ++S ++ ++L+R+IEE Sbjct: 63 CTSLISREDVCRAETQSLIDKFFGGSKKALFSALLQDEKLSSEDLDELRRMIEE 116 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.316 0.132 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 168,257,237 Number of extensions: 5882371 Number of successful extensions: 15730 Number of sequences better than 1.0e-05: 16 Number of HSP's gapped: 15738 Number of HSP's successfully gapped: 16 Length of query: 119 Length of database: 757,237,578 Length adjustment: 84 Effective length of query: 35 Effective length of database: 529,169,262 Effective search space: 18520924170 Effective search space used: 18520924170 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 120 (50.8 bits)