BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0342.0011.p (471 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value sp|P80859|6PG2_BACSU 6-phosphogluconate dehydrogenase, decarboxy... 739 0.0 ref|NP_691106.1| 6-phosphogluconate dehydrogenase [Oceanobacillu... 697 0.0 ref|NP_814782.1| 6-phosphogluconate dehydrogenase, decarboxylati... 670 0.0 ref|NP_464901.1| similar to 6-phosphogluconate dehydrogenase [Li... 670 0.0 ref|NP_470749.1| similar to 6-phosphogluconate dehydrogenase [Li... 664 0.0 >sp|P80859|6PG2_BACSU 6-phosphogluconate dehydrogenase, decarboxylating II (GNTZII) emb|CAB14318.2| yqjI [Bacillus subtilis subsp. subtilis str. 168] Length = 469 Score = 739 bits (1907), Expect = 0.0, Method: Compositional matrix adjust. Identities = 349/468 (74%), Positives = 396/468 (84%) Query: 1 MGKQQIGVVGLAVMGKNLALNMESKGFSVALYNRSREKTDELLAEAAGKNFTGAYSIEEF 60 M KQQIGV+GLAVMGKNLALN+ES+GFSV++YNRS KT+E L EA GKN G YSIEEF Sbjct: 1 MSKQQIGVIGLAVMGKNLALNIESRGFSVSVYNRSSSKTEEFLQEAKGKNVVGTYSIEEF 60 Query: 61 VQSLETPRKIMIMVKAGKPTDDTIQQLVPHLSPGDILIDGGNAFFPDTQRRNKELQAQGF 120 VQSLETPRKI++MVKAG TD TIQ L+PHL DILIDGGN ++ DTQRRNKEL G Sbjct: 61 VQSLETPRKILLMVKAGTATDATIQSLLPHLEKDDILIDGGNTYYKDTQRRNKELAESGI 120 Query: 121 RFIGAGVSGGEEGALKGPAIMPGGQKDAYELVEPILTAISAKVDGDPCSTYIGEDGAGHY 180 FIG GVSGGEEGALKGP+IMPGGQK+A+ELV+PIL AISAKVDG+PC+TYIG DGAGHY Sbjct: 121 HFIGTGVSGGEEGALKGPSIMPGGQKEAHELVKPILEAISAKVDGEPCTTYIGPDGAGHY 180 Query: 181 VKMVHNGIEYGDMQLIGEAYQLLKDVLGLDTAELHEIFSEWNRGELSSYLIEITADIFAK 240 VKMVHNGIEYGDMQLI E+Y +LK VLGL ELHE+F+EWN+GEL SYLIEITADIF K Sbjct: 181 VKMVHNGIEYGDMQLISESYFILKQVLGLSADELHEVFAEWNKGELDSYLIEITADIFTK 240 Query: 241 ADPDTGKPMVDVILDSAGQKGTGKWTSQNALDLGVPLSIITESVFARFISAMKEERVAAS 300 D +TGKP+VDVILD AGQKGTGKWTSQ+ALDLGVPL IITESVFARFISAMKEERV AS Sbjct: 241 KDEETGKPLVDVILDKAGQKGTGKWTSQSALDLGVPLPIITESVFARFISAMKEERVKAS 300 Query: 301 KRLKGPAVKGYDGDAKEFIEAVRKALYASKIASYAQGFAQMRVASDEYNWNLNYGSIAMI 360 L GP VK + +E IEAVRKAL+ SKI SYAQGFAQM+ AS+EYNW+L YG IAMI Sbjct: 301 GLLSGPEVKPVTENKEELIEAVRKALFMSKICSYAQGFAQMKAASEEYNWDLKYGEIAMI 360 Query: 361 FRGGCIIRAGFLQNIKDAYDRDPELKNLFLDEYFSSVVHNYQEAWRDVVALAVKRGIPVP 420 FRGGCIIRA FLQ IK+AYDR+PEL NL LD YF ++V +YQ A R V++LAV +G+PVP Sbjct: 361 FRGGCIIRAAFLQKIKEAYDREPELDNLLLDSYFKNIVESYQGALRQVISLAVAQGVPVP 420 Query: 421 AFASGLAYYDSYRSERLPANLLQAQRDYFGAHTFERLDQPGSFHFQWM 468 +F+S LAYYDSYR+ LPANL+QAQRDYFGAHT+ER D+ G FH +WM Sbjct: 421 SFSSALAYYDSYRTAVLPANLIQAQRDYFGAHTYERTDKEGIFHTEWM 468 >ref|NP_691106.1| 6-phosphogluconate dehydrogenase [Oceanobacillus iheyensis HTE831] dbj|BAC12141.1| 6-phosphogluconate dehydrogenase (decarboxylating) [Oceanobacillus iheyensis HTE831] Length = 468 Score = 697 bits (1800), Expect = 0.0, Method: Compositional matrix adjust. Identities = 338/466 (72%), Positives = 379/466 (81%), Gaps = 1/466 (0%) Query: 3 KQQIGVVGLAVMGKNLALNMESKGFSVALYNRSREKTDELLA-EAAGKNFTGAYSIEEFV 61 KQQIGV+GLAVMGKN+ALNMESKGFSVA++NRS EKT+ LA EA+GK F GA +IEEFV Sbjct: 2 KQQIGVIGLAVMGKNIALNMESKGFSVAVFNRSYEKTENFLANEASGKKFIGAKTIEEFV 61 Query: 62 QSLETPRKIMIMVKAGKPTDDTIQQLVPHLSPGDILIDGGNAFFPDTQRRNKELQAQGFR 121 SLE PRKIM+MVKAG TD TI+ L PHL GDILIDGGN + DT RRNKEL G Sbjct: 62 DSLEKPRKIMLMVKAGPATDATIESLKPHLDKGDILIDGGNTLYEDTIRRNKELDESGIH 121 Query: 122 FIGAGVSGGEEGALKGPAIMPGGQKDAYELVEPILTAISAKVDGDPCSTYIGEDGAGHYV 181 FIG GVSGGEEGAL GP+IMPGGQ +AY+LV PI AISAKVD DPC TYIG +GAGH+V Sbjct: 122 FIGTGVSGGEEGALNGPSIMPGGQAEAYKLVAPIFEAISAKVDKDPCVTYIGPNGAGHFV 181 Query: 182 KMVHNGIEYGDMQLIGEAYQLLKDVLGLDTAELHEIFSEWNRGELSSYLIEITADIFAKA 241 KMVHNGIEYGDMQLI EAY L+K+VLGLD ELH +F EWN GEL SYLIEITADIF K Sbjct: 182 KMVHNGIEYGDMQLIAEAYDLMKNVLGLDAKELHNVFKEWNDGELDSYLIEITADIFTKV 241 Query: 242 DPDTGKPMVDVILDSAGQKGTGKWTSQNALDLGVPLSIITESVFARFISAMKEERVAASK 301 D +TGKP+V+VILD AGQKGTGKWTS+NALDLGVPL +ITESVFARFIS++K+ERV ASK Sbjct: 242 DEETGKPLVEVILDKAGQKGTGKWTSKNALDLGVPLPLITESVFARFISSLKDERVRASK 301 Query: 302 RLKGPAVKGYDGDAKEFIEAVRKALYASKIASYAQGFAQMRVASDEYNWNLNYGSIAMIF 361 L GP +E IEA+R+ALY SKI SYAQGFAQMR ASDEY+WNL+YG IAMI+ Sbjct: 302 ELSGPTNAMLGESKEELIEAIRQALYMSKIVSYAQGFAQMRAASDEYDWNLSYGDIAMIW 361 Query: 362 RGGCIIRAGFLQNIKDAYDRDPELKNLFLDEYFSSVVHNYQEAWRDVVALAVKRGIPVPA 421 RGGCIIRA FLQ IKDAYDRD +L NL LD YF +V YQ + R VV+LAV GI VP Sbjct: 362 RGGCIIRAKFLQKIKDAYDRDSQLPNLMLDPYFKEIVEGYQSSLRKVVSLAVAHGIAVPT 421 Query: 422 FASGLAYYDSYRSERLPANLLQAQRDYFGAHTFERLDQPGSFHFQW 467 F+S +AYYDSYRSE LPANL+QAQRDYFGAHT+ER D+ G FH QW Sbjct: 422 FSSAIAYYDSYRSEDLPANLIQAQRDYFGAHTYERKDKDGIFHSQW 467 >ref|NP_814782.1| 6-phosphogluconate dehydrogenase, decarboxylating [Enterococcus faecalis V583] gb|AAO80852.1| 6-phosphogluconate dehydrogenase, decarboxylating [Enterococcus faecalis V583] Length = 473 Score = 670 bits (1729), Expect = 0.0, Method: Compositional matrix adjust. Identities = 320/472 (67%), Positives = 379/472 (80%), Gaps = 2/472 (0%) Query: 1 MGKQQIGVVGLAVMGKNLALNMESKGFSVALYNRSREKTDELLAEAAGKNFTGAYSIEEF 60 M KQQ GVVG+AVMGKNLALN+ES+G++VALYNR+ KT E++ E KNF YSIEEF Sbjct: 1 MTKQQFGVVGMAVMGKNLALNIESRGYTVALYNRTGSKTTEVVEEHPDKNFQATYSIEEF 60 Query: 61 VQSLETPRKIMIMVKAGKPTDDTIQQLVPHLSPGDILIDGGNAFFPDTQRRNKELQAQGF 120 V ++E PR+IM+MVKAG TD TIQ+L+PHL GDILIDGGN FF DT RRN+EL G Sbjct: 61 VNAIEKPRRIMLMVKAGPATDATIQELLPHLDKGDILIDGGNTFFKDTMRRNEELANSGI 120 Query: 121 RFIGAGVSGGEEGALKGPAIMPGGQKDAYELVEPILTAISAKV-DGDPCSTYIGEDGAGH 179 FIG GVSGGEEGALKGP+IMPGGQK+AYELV PIL ISAK DG+PC TYIG +GAGH Sbjct: 121 NFIGTGVSGGEEGALKGPSIMPGGQKEAYELVAPILEKISAKAEDGEPCVTYIGPNGAGH 180 Query: 180 YVKMVHNGIEYGDMQLIGEAYQLLKDVLGLDTAELHEIFSEWNRGELSSYLIEITADIFA 239 YVKMVHNGIEYGDMQLI E+Y L+K +LGL E+ EIF EWN GEL SYLIEITADI Sbjct: 181 YVKMVHNGIEYGDMQLIAESYDLMKQILGLSVDEMAEIFKEWNEGELDSYLIEITADILT 240 Query: 240 KADPD-TGKPMVDVILDSAGQKGTGKWTSQNALDLGVPLSIITESVFARFISAMKEERVA 298 + D + T +P+VDVILD+AG KGTGKWTSQ+ALDLGVPL +ITESVFARFISA KEERV Sbjct: 241 RKDDEGTDQPIVDVILDAAGNKGTGKWTSQSALDLGVPLPLITESVFARFISAYKEERVK 300 Query: 299 ASKRLKGPAVKGYDGDAKEFIEAVRKALYASKIASYAQGFAQMRVASDEYNWNLNYGSIA 358 AS L PA + GD KE IE +R+ALY SK+ SYAQGFAQ+R AS+EY W+L +G IA Sbjct: 301 ASGILSKPAAFNFAGDKKELIEKIREALYFSKLMSYAQGFAQLRAASEEYGWDLPFGEIA 360 Query: 359 MIFRGGCIIRAGFLQNIKDAYDRDPELKNLFLDEYFSSVVHNYQEAWRDVVALAVKRGIP 418 I+R GCIIRA FLQ I DAY+++P L+NL LDEYF + YQ+A R+VVA+AV+ G+P Sbjct: 361 KIWRAGCIIRAQFLQKITDAYEKNPALENLLLDEYFVEITKKYQQAVREVVAIAVQAGVP 420 Query: 419 VPAFASGLAYYDSYRSERLPANLLQAQRDYFGAHTFERLDQPGSFHFQWMDQ 470 VP F+S +AYYDSYRS+RLPANL+QAQRDYFGAHT+ER D+ G +H+ W ++ Sbjct: 421 VPTFSSAIAYYDSYRSDRLPANLIQAQRDYFGAHTYERTDKEGIYHYSWYNE 472 >ref|NP_464901.1| similar to 6-phosphogluconate dehydrogenase [Listeria monocytogenes EGD-e] pir||AH1246 6-phosphogluconate dehydrogenase homolog lmo1376 [imported] - Listeria monocytogenes (strain EGD-e) emb|CAC99454.1| lmo1376 [Listeria monocytogenes] Length = 472 Score = 670 bits (1729), Expect = 0.0, Method: Compositional matrix adjust. Identities = 319/467 (68%), Positives = 375/467 (80%) Query: 1 MGKQQIGVVGLAVMGKNLALNMESKGFSVALYNRSREKTDELLAEAAGKNFTGAYSIEEF 60 M KQ+IGV+G+ VMG+NLALN+ES+G +V+++NRS EKT ++ E A K YS+EEF Sbjct: 1 MAKQEIGVIGMGVMGRNLALNIESRGHTVSIFNRSTEKTKAVMEENADKKLVPTYSLEEF 60 Query: 61 VQSLETPRKIMIMVKAGKPTDDTIQQLVPHLSPGDILIDGGNAFFPDTQRRNKELQAQGF 120 V+SLE PR+I+IMVKAG TD I+ + P L+ GDILIDGGNAFF DT RRNKEL +GF Sbjct: 61 VESLEVPRRILIMVKAGDATDMMIEAVKPFLNEGDILIDGGNAFFKDTIRRNKELSEEGF 120 Query: 121 RFIGAGVSGGEEGALKGPAIMPGGQKDAYELVEPILTAISAKVDGDPCSTYIGEDGAGHY 180 FIG GVSGGEEGALKGP+IMPGGQ+ AY+LV PIL I+A DG+PC TYIG DGAGHY Sbjct: 121 NFIGTGVSGGEEGALKGPSIMPGGQRKAYDLVAPILREIAAVADGEPCVTYIGPDGAGHY 180 Query: 181 VKMVHNGIEYGDMQLIGEAYQLLKDVLGLDTAELHEIFSEWNRGELSSYLIEITADIFAK 240 VKMVHNGIEYGDMQLI EAY +LK++ GL EL ++F EWN GEL SYLIEIT +I Sbjct: 181 VKMVHNGIEYGDMQLIAEAYTILKEIGGLSHDELADVFEEWNNGELDSYLIEITKNILKV 240 Query: 241 ADPDTGKPMVDVILDSAGQKGTGKWTSQNALDLGVPLSIITESVFARFISAMKEERVAAS 300 D +TGKP+VDVILD AGQKGTGKWTSQ+ALDLGVPLS+ITESVFAR+ISA+KEERV AS Sbjct: 241 KDEETGKPIVDVILDKAGQKGTGKWTSQSALDLGVPLSLITESVFARYISALKEERVYAS 300 Query: 301 KRLKGPAVKGYDGDAKEFIEAVRKALYASKIASYAQGFAQMRVASDEYNWNLNYGSIAMI 360 L GP+ ++GD K F+E+VR+ALY SKIASYAQGFAQMR AS+EYNW+L YG IA I Sbjct: 301 TVLTGPSNYRFEGDKKAFVESVRRALYFSKIASYAQGFAQMRAASEEYNWDLQYGEIAKI 360 Query: 361 FRGGCIIRAGFLQNIKDAYDRDPELKNLFLDEYFSSVVHNYQEAWRDVVALAVKRGIPVP 420 FR GCIIRA FLQ I DAY++D LKNL LD YF + HNYQ R VVA AVK GIPVP Sbjct: 361 FRAGCIIRARFLQKITDAYNQDKNLKNLLLDPYFKDIAHNYQGDLRTVVAEAVKAGIPVP 420 Query: 421 AFASGLAYYDSYRSERLPANLLQAQRDYFGAHTFERLDQPGSFHFQW 467 F + ++YYDSYRSE L ANL+QAQRDYFGAHT+ER+D+PG FH +W Sbjct: 421 TFTAAISYYDSYRSEVLSANLIQAQRDYFGAHTYERVDKPGVFHTEW 467 >ref|NP_470749.1| similar to 6-phosphogluconate dehydrogenase [Listeria innocua] pir||AD1609 6-phosphogluconate dehydrogenase homolog lin1413 [imported] - Listeria innocua (strain Clip11262) emb|CAC96644.1| lin1413 [Listeria innocua] Length = 472 Score = 664 bits (1712), Expect = 0.0, Method: Compositional matrix adjust. Identities = 316/467 (67%), Positives = 374/467 (80%) Query: 1 MGKQQIGVVGLAVMGKNLALNMESKGFSVALYNRSREKTDELLAEAAGKNFTGAYSIEEF 60 M KQ+IGV+G+ VMG+NLALN+ES+G +V+++NRS EKT ++ E A K YS+EEF Sbjct: 1 MAKQEIGVIGMGVMGRNLALNIESRGHTVSIFNRSTEKTKAVMEENADKKLVPTYSLEEF 60 Query: 61 VQSLETPRKIMIMVKAGKPTDDTIQQLVPHLSPGDILIDGGNAFFPDTQRRNKELQAQGF 120 V+SLE PR+I+IMVKAG TD I+ + P L+ GDILIDGGNAFF DT RRNKEL +GF Sbjct: 61 VESLEVPRRILIMVKAGDATDMMIEAVKPFLNEGDILIDGGNAFFKDTIRRNKELSEEGF 120 Query: 121 RFIGAGVSGGEEGALKGPAIMPGGQKDAYELVEPILTAISAKVDGDPCSTYIGEDGAGHY 180 FIG GVSGGEEGALKGP+IMPGGQ+ AY+LV PIL I+A DG+PC TYIG DGAGHY Sbjct: 121 NFIGTGVSGGEEGALKGPSIMPGGQRKAYDLVAPILREIAAVADGEPCVTYIGPDGAGHY 180 Query: 181 VKMVHNGIEYGDMQLIGEAYQLLKDVLGLDTAELHEIFSEWNRGELSSYLIEITADIFAK 240 VKMVHNGIEYGDMQLI EAY +LK++ GL EL ++F EWN GEL SYLIEIT +I Sbjct: 181 VKMVHNGIEYGDMQLIAEAYTILKEIGGLSHDELADVFEEWNNGELDSYLIEITKNILKV 240 Query: 241 ADPDTGKPMVDVILDSAGQKGTGKWTSQNALDLGVPLSIITESVFARFISAMKEERVAAS 300 D +TGKP+VDVILD AGQKGTGKWTSQ+ALDLGVPLS+ITESVFAR+ISA+K+ERV AS Sbjct: 241 KDEETGKPIVDVILDKAGQKGTGKWTSQSALDLGVPLSLITESVFARYISALKDERVYAS 300 Query: 301 KRLKGPAVKGYDGDAKEFIEAVRKALYASKIASYAQGFAQMRVASDEYNWNLNYGSIAMI 360 L GP+ ++GD K F+E+VR+ALY SKIASYAQGFAQMR AS+E +W+L YG IA I Sbjct: 301 TVLSGPSNYRFEGDKKAFVESVRRALYFSKIASYAQGFAQMRAASEENDWDLQYGEIAKI 360 Query: 361 FRGGCIIRAGFLQNIKDAYDRDPELKNLFLDEYFSSVVHNYQEAWRDVVALAVKRGIPVP 420 FR GCIIRA FLQ I DAY++D LKNL LD YF + HNYQ R VVA AVK GIPVP Sbjct: 361 FRAGCIIRARFLQKITDAYNKDKNLKNLLLDPYFKDIAHNYQGDLRTVVAEAVKAGIPVP 420 Query: 421 AFASGLAYYDSYRSERLPANLLQAQRDYFGAHTFERLDQPGSFHFQW 467 F + ++YYDSYRSE L ANL+QAQRDYFGAHT+ER+D+PG FH +W Sbjct: 421 TFTAAISYYDSYRSEVLSANLIQAQRDYFGAHTYERVDKPGVFHTEW 467 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.318 0.136 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 733,072,886 Number of extensions: 32536443 Number of successful extensions: 85131 Number of sequences better than 1.0e-05: 953 Number of HSP's gapped: 83766 Number of HSP's successfully gapped: 957 Length of query: 471 Length of database: 757,237,578 Length adjustment: 129 Effective length of query: 342 Effective length of database: 406,989,807 Effective search space: 139190513994 Effective search space used: 139190513994 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 128 (53.9 bits)