BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0342.0010.p (160 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_632525.1| 3-demethylubiquinone-9 3-methyltransferase [Met... 211 4e-54 ref|ZP_00028735.1| COG3865: Uncharacterized protein conserved in... 195 4e-49 ref|ZP_00109160.1| COG3865: Uncharacterized protein conserved in... 191 6e-48 ref|ZP_00084579.1| COG3865: Uncharacterized protein conserved in... 186 1e-46 ref|NP_631338.1| putative DNA-binding protein [Streptomyces coel... 184 4e-46 >ref|NP_632525.1| 3-demethylubiquinone-9 3-methyltransferase [Methanosarcina mazei Goe1] gb|AAM30197.1| 3-demethylubiquinone-9 3-methyltransferase [Methanosarcina mazei Goe1] Length = 157 Score = 211 bits (537), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 98/156 (62%), Positives = 121/156 (77%) Query: 1 MPKIVTNLWFDTEAEEAAKYYTSIFKNSRITNTAYYGEGGRRPAGTVLTVTFELDGQVYT 60 M KI LWFD++AEEA +Y SIFKNS+I +T YGE G P G V+++TF+L+GQ + Sbjct: 1 MQKITPFLWFDSQAEEAVNFYISIFKNSKILSTVRYGEAGPGPKGAVMSMTFQLEGQEFI 60 Query: 61 ALNGGPEFKFTEAISLLVNCEGQEEVDELWEKLSAGGTEGPCGWLKDRYGLSWQIFPTVL 120 ALNGGPEF F+ AIS VNCE QEE+DELWEKLS G + W+KDRYG+SWQI PTVL Sbjct: 61 ALNGGPEFTFSPAISFFVNCETQEEIDELWEKLSLDGEKQGPAWVKDRYGISWQIVPTVL 120 Query: 121 GELLNDPDPVKAQRVMQAMLQMGKLDIAALKRAHEG 156 GELL+DPD K++RVM+AMLQM K+DI LK+AH+G Sbjct: 121 GELLSDPDTEKSRRVMEAMLQMDKIDIEKLKQAHKG 156 >ref|ZP_00028735.1| COG3865: Uncharacterized protein conserved in bacteria [Burkholderia fungorum] Length = 156 Score = 195 bits (495), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 90/156 (57%), Positives = 113/156 (72%) Query: 1 MPKIVTNLWFDTEAEEAAKYYTSIFKNSRITNTAYYGEGGRRPAGTVLTVTFELDGQVYT 60 M KI LWFD +AEEA ++YTS+F +SRI T +Y + G P G VL VTFE++GQ + Sbjct: 1 MQKIAPCLWFDGKAEEATRFYTSVFSDSRIATTMHYTDAGPGPKGDVLAVTFEIEGQEFM 60 Query: 61 ALNGGPEFKFTEAISLLVNCEGQEEVDELWEKLSAGGTEGPCGWLKDRYGLSWQIFPTVL 120 ALNGGP+F FT AISL V+C Q E+D W +L+ GGT CGWL+DR+G+SWQI P VL Sbjct: 61 ALNGGPQFTFTPAISLFVHCGSQAEIDRYWAQLTEGGTPWQCGWLQDRFGVSWQIVPDVL 120 Query: 121 GELLNDPDPVKAQRVMQAMLQMGKLDIAALKRAHEG 156 GE+L DPD KA RVM AM++M KLDIA L+ A+ G Sbjct: 121 GEMLRDPDAAKASRVMAAMMKMVKLDIAQLEAAYRG 156 >ref|ZP_00109160.1| COG3865: Uncharacterized protein conserved in bacteria [Nostoc punctiforme] Length = 165 Score = 191 bits (484), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 90/156 (57%), Positives = 115/156 (73%), Gaps = 6/156 (3%) Query: 3 KIVTNLWFDTEAEEAAKYYTSIFKNSRITNTAYYGEGGR----RPAGTVLTVTFELDGQV 58 KI LWFD +AE AA++YTSIF+NS+I + + YG+ G+ +PAG V+TV+FELDGQ Sbjct: 6 KITPCLWFDDQAEAAAQFYTSIFRNSKIVHVSRYGDAGQEMKGKPAGAVMTVSFELDGQP 65 Query: 59 YTALNGGPEFKFTEAISLLVNCEGQEEVDELWEKLSAGGTEGP--CGWLKDRYGLSWQIF 116 +TALNGGP FKF EAIS + C+ Q +VD+ W+KLSAGG E CGWLKD+YG+SWQI Sbjct: 66 FTALNGGPTFKFNEAISFQIFCDTQADVDDYWQKLSAGGDETAQQCGWLKDKYGVSWQII 125 Query: 117 PTVLGELLNDPDPVKAQRVMQAMLQMGKLDIAALKR 152 P +L ELLN PD +Q+V MLQM K++I LKR Sbjct: 126 PRILIELLNHPDAATSQKVTTTMLQMKKIEIDELKR 161 >ref|ZP_00084579.1| COG3865: Uncharacterized protein conserved in bacteria [Pseudomonas fluorescens PfO-1] Length = 176 Score = 186 bits (473), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 89/160 (55%), Positives = 108/160 (67%), Gaps = 6/160 (3%) Query: 3 KIVTNLWFDTEAEEAAKYYTSIFKNSRITNTAYYGEGGR----RPAGTVLTVTFELDGQV 58 K+ LWFD +AE AAK+Y SIF +S+IT +Y + G+ RP G+V+TV+FELDG Sbjct: 15 KLTPCLWFDDQAEAAAKFYCSIFDHSKITALTHYSKVGQEFHGRPEGSVMTVSFELDGHT 74 Query: 59 YTALNGGPEFKFTEAISLLVNCEGQEEVDELWEKLSAGG--TEGPCGWLKDRYGLSWQIF 116 +T LNGGP FKF EAIS VNC+ QEEVD W LSAGG CGWLKD++G+SWQI Sbjct: 75 FTGLNGGPVFKFNEAISFQVNCQNQEEVDHFWGNLSAGGPVQAQQCGWLKDQFGVSWQIV 134 Query: 117 PTVLGELLNDPDPVKAQRVMQAMLQMGKLDIAALKRAHEG 156 P ++ DPD K QR MQAM M KLDIA L+RA G Sbjct: 135 PVAFMHMMTDPDQTKVQRAMQAMFGMKKLDIAELERAFAG 174 >ref|NP_631338.1| putative DNA-binding protein [Streptomyces coelicolor A3(2)] pir||T35326 hypothetical protein SC5H1.10c - Streptomyces coelicolor emb|CAB42935.1| putative DNA-binding protein [Streptomyces coelicolor A3(2)] Length = 160 Score = 184 bits (468), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 86/154 (55%), Positives = 108/154 (70%), Gaps = 1/154 (0%) Query: 4 IVTNLWFDTEAEEAAKYYTSIFKNSRITNTAYYGEGGRRPAGTVLTVTFELDGQVYTALN 63 T LWFD +AE+AA +Y S+FKNS I Y EG +PAG+VLTV F +GQ + LN Sbjct: 6 FTTCLWFDGDAEDAAHFYVSVFKNSGIGAVTRYPEGAPQPAGSVLTVEFTANGQKFVGLN 65 Query: 64 GGPEFKFTEAISLLVNCEGQEEVDELWEKLSAGGTE-GPCGWLKDRYGLSWQIFPTVLGE 122 GGP+FKF EAIS V CE Q+EVD W +L+ GG E GPCGWLKDR+G+SWQ+ P L E Sbjct: 66 GGPQFKFNEAISFQVTCEDQDEVDHYWTRLTEGGGEDGPCGWLKDRFGVSWQVVPRRLEE 125 Query: 123 LLNDPDPVKAQRVMQAMLQMGKLDIAALKRAHEG 156 + DPDP + R +AM+ M KLDIAAL++A+ G Sbjct: 126 MFRDPDPARVARANKAMMSMRKLDIAALEQAYAG 159 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.316 0.135 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 255,788,076 Number of extensions: 10576401 Number of successful extensions: 21738 Number of sequences better than 1.0e-05: 62 Number of HSP's gapped: 21624 Number of HSP's successfully gapped: 70 Length of query: 160 Length of database: 757,237,578 Length adjustment: 115 Effective length of query: 45 Effective length of database: 445,001,193 Effective search space: 20025053685 Effective search space used: 20025053685 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 120 (50.8 bits)