BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0342.0004.p (323 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_389021.1| oligopeptide ABC transporter (permease) [Bacill... 278 1e-73 ref|NP_977324.1| oligopeptide ABC transporter, permease protein ... 266 6e-70 ref|NP_563188.1| oligopeptide ABC transporter [Clostridium perfr... 266 6e-70 ref|NP_830694.1| Oligopeptide transport system permease protein ... 266 6e-70 ref|NP_654852.1| hypothetical protein predicted by GeneMark [Bac... 264 2e-69 >ref|NP_389021.1| oligopeptide ABC transporter (permease) [Bacillus subtilis] sp|P42062|APPB_BACSU Oligopeptide transport system permease protein appB pir||I40546 oligopeptide ABC transporter (permease) appB - Bacillus subtilis gb|AAA62359.1| AppB emb|CAB12996.1| oligopeptide ABC transporter (permease) [Bacillus subtilis subsp. subtilis str. 168] Length = 317 Score = 278 bits (711), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 135/316 (42%), Positives = 204/316 (64%), Gaps = 2/316 (0%) Query: 1 MTEYLIRRVLQSXXXXXXXXXXXXXXXHAAPGGPTQMMLSPGLSPEVFKQQAHNLGLDQP 60 M Y+IRR L S AAPG P +M+ P +S +Q GL+ P Sbjct: 1 MAAYIIRRTLMSIPILLGITILSFVIMKAAPGDPMTLMMDPKISQADREQFIEKYGLNDP 60 Query: 61 VPVQYVRWISGLLQGDLGYTF-KNHLPVADLLWPRIGNTFILMGAAWLLSLIIAIPWGIY 119 VQY++W+ ++QGD G + + PV++L+ R+ NT +LM + +L+L+I+IP+G+ Sbjct: 61 QYVQYLKWLGNMVQGDFGTSIVRKGTPVSELIMARLPNTLLLMLVSTILALMISIPFGVL 120 Query: 120 NSTKVYGLSDQSASFISYLGFAMPTFWFGILLQQWFSLKLNWFPLSDMHTRGKEGDIGDL 179 ++ + Y D +F S++G A+P FWFG++L S+ L WFP + T E +I D Sbjct: 121 SAKRPYSKIDYGITFTSFIGLAIPNFWFGLILIMVLSVNLGWFPTGGVETLNTEFNIFDR 180 Query: 180 LMHLVLPVTVLSLGFLASYMKYARASMLEVLDQDYIRTARAKGVKERKVVFHHALRNALI 239 + HL+LP VL+ +A +Y R++ML+VL+QDYIRTARAKG KE +V+F H LRNAL+ Sbjct: 181 IHHLILPAFVLATADMAGLTRYTRSNMLDVLNQDYIRTARAKGFKENRVLFKHGLRNALL 240 Query: 240 PIITILGLDLPILVAGAALTESVFNWPGMGRWFVQMASERE-YSVLMAITIVTAVMVVLG 298 P+ITI GL +P + G+ + E +F WPG+G+ FV A +R ++MA+T+++AV+VV+G Sbjct: 241 PVITIFGLMIPSFIGGSVVVEQIFTWPGLGKLFVDSAFQRTIIRIIMAMTVISAVLVVVG 300 Query: 299 NLLADILYAIVDPRVK 314 NL+ADILYAIVDPR++ Sbjct: 301 NLIADILYAIVDPRIE 316 >ref|NP_977324.1| oligopeptide ABC transporter, permease protein [Bacillus cereus ATCC 10987] gb|AAS39932.1| oligopeptide ABC transporter, permease protein [Bacillus cereus ATCC 10987] Length = 316 Score = 266 bits (679), Expect = 6e-70, Method: Compositional matrix adjust. Identities = 129/315 (40%), Positives = 202/315 (64%), Gaps = 1/315 (0%) Query: 1 MTEYLIRRVLQSXXXXXXXXXXXXXXXHAAPGGPTQMMLSPGLSPEVFKQQAHNLGLDQP 60 M + + +R+L + APG P + ++P +SP ++ +LGLDQP Sbjct: 1 MYKVIAKRLLNAIPLLFVISIISFLLIKLAPGDPVRNFVTPNMSPIDVERIRTSLGLDQP 60 Query: 61 VPVQYVRWISGLLQGDLGYTFKNHLPVADLLWPRIGNTFILMGAAWLLSLIIAIPWGIYN 120 + +QY+ W+ +L G+ GY+ +NH PV DL+ R+ T LMG++ L+S +IAIP G+ Sbjct: 61 IYMQYILWLKNILTGNFGYSLQNHRPVLDLIVERLPATIGLMGSSLLVSFVIAIPLGLLT 120 Query: 121 STKVYGLSDQSASFISYLGFAMPTFWFGILLQQWFSLKLNWFPLSDMHTRGKEGDIGDLL 180 K + D+ +FISY+G +MP FWF +LL FSLKLN P M T G++ + D++ Sbjct: 121 GVKKNSIFDRIVNFISYVGISMPVFWFALLLIYLFSLKLNLLPSMGMRTVGQDSFL-DIV 179 Query: 181 MHLVLPVTVLSLGFLASYMKYARASMLEVLDQDYIRTARAKGVKERKVVFHHALRNALIP 240 H +LP VL+ ++ YM+Y R+S ++ L++DY++ A G ++ V+F+H LRN LIP Sbjct: 180 QHGILPCMVLAFQNVSVYMRYIRSSTIQQLEEDYVQIQYAYGASKKTVLFNHVLRNVLIP 239 Query: 241 IITILGLDLPILVAGAALTESVFNWPGMGRWFVQMASEREYSVLMAITIVTAVMVVLGNL 300 IITI GL +P LV GA +TE+VF+WPG+G V +Y ++MAIT++++ M++LGNL Sbjct: 240 IITIFGLSIPSLVGGAFITETVFSWPGLGSLGVNAIFRFDYPIIMAITLLSSFMLILGNL 299 Query: 301 LADILYAIVDPRVKL 315 +ADILY +VDPR+++ Sbjct: 300 IADILYGVVDPRIRM 314 >ref|NP_563188.1| oligopeptide ABC transporter [Clostridium perfringens] dbj|BAB81978.1| oligopeptide ABC transporter [Clostridium perfringens str. 13] Length = 321 Score = 266 bits (679), Expect = 6e-70, Method: Compositional matrix adjust. Identities = 134/320 (41%), Positives = 207/320 (64%), Gaps = 5/320 (1%) Query: 1 MTEYLIRRVLQSXXXXXXXXXXXXXXXHAAPGGPTQMMLSPGLSPEVFKQQAHNLGLDQP 60 M +Y+ RR+L APG + P +S E + LD+P Sbjct: 1 MLQYITRRILLIIPTIVGVSLVLFFIFAMAPGDAITANMDPNMSVETKQAIREKYHLDEP 60 Query: 61 VPVQYVRWISGLL-QGDLGYTFKNHLPVADLLWPRIGNTFILMGAAWLLSLIIAIPWGIY 119 QY+ W+ G++ +G LG +F PV++++ I N+FIL A+ +L LIIA+P GI Sbjct: 61 KTTQYMYWLKGVVTEGSLGESFYYKRPVSEVMKDFIPNSFILGAASLILGLIIAVPIGIV 120 Query: 120 NSTKVYGLSDQSASFISYLGFAMPTFWFGILLQQWFSLKLNWFPLSDMHTRGKEGD---- 175 ++TK Y D+ + + +G +MP+F+FG++L ++ ++LN FP+S M T G Sbjct: 121 SATKQYSFFDKFFTVFALMGISMPSFFFGLILIKYLGVQLNLFPISGMTTPGSAYTGMQY 180 Query: 176 IGDLLMHLVLPVTVLSLGFLASYMKYARASMLEVLDQDYIRTARAKGVKERKVVFHHALR 235 + D+L H++LP+ VL+LG + +M+Y R+SMLEV+ QDYIRTARAKG+KE+ V++ HALR Sbjct: 181 VLDVLKHMILPLIVLTLGSVGGWMRYTRSSMLEVVRQDYIRTARAKGLKEKVVIYKHALR 240 Query: 236 NALIPIITILGLDLPILVAGAALTESVFNWPGMGRWFVQMASEREYSVLMAITIVTAVMV 295 NALIP++T+LG+ +P L +GA LTE +FNWPG+G + + R+Y +LM I + A++V Sbjct: 241 NALIPVVTLLGMSIPGLFSGATLTEKIFNWPGIGPVQLSAVNNRDYYLLMGINLTLAILV 300 Query: 296 VLGNLLADILYAIVDPRVKL 315 ++GNLLADI+YA+VDPR++L Sbjct: 301 LIGNLLADIIYALVDPRIRL 320 >ref|NP_830694.1| Oligopeptide transport system permease protein oppB [Bacillus cereus ATCC 14579] gb|AAP07895.1| Oligopeptide transport system permease protein oppB [Bacillus cereus ATCC 14579] Length = 316 Score = 266 bits (679), Expect = 6e-70, Method: Compositional matrix adjust. Identities = 129/315 (40%), Positives = 201/315 (63%), Gaps = 1/315 (0%) Query: 1 MTEYLIRRVLQSXXXXXXXXXXXXXXXHAAPGGPTQMMLSPGLSPEVFKQQAHNLGLDQP 60 M + + +R+L + APG P + ++P +SP ++ +LGLDQP Sbjct: 1 MYKVIAKRLLNAIPLLFVISIISFLLIKLAPGDPVRNFVTPNMSPIDVERIRKSLGLDQP 60 Query: 61 VPVQYVRWISGLLQGDLGYTFKNHLPVADLLWPRIGNTFILMGAAWLLSLIIAIPWGIYN 120 + VQY W+ +L G+ GY+ +NH PV +L+ R+ T LMG++ L+S +IAIP G++ Sbjct: 61 IYVQYFLWLKNILTGNFGYSLQNHRPVLELITERLPATIGLMGSSLLVSFVIAIPLGLFT 120 Query: 121 STKVYGLSDQSASFISYLGFAMPTFWFGILLQQWFSLKLNWFPLSDMHTRGKEGDIGDLL 180 K D+ +FISY+G +MP FWF +LL FSLKLN P M T GK+ + D++ Sbjct: 121 GVKKNSFFDRIVNFISYVGISMPVFWFALLLVYLFSLKLNLLPSMGMRTVGKD-SVWDIV 179 Query: 181 MHLVLPVTVLSLGFLASYMKYARASMLEVLDQDYIRTARAKGVKERKVVFHHALRNALIP 240 H +LP VL+ ++ YM+Y R+S ++ L+++Y++ A G ++ V+F+H LRN LIP Sbjct: 180 QHGILPCMVLAFQNVSVYMRYIRSSTIQQLEEEYVQIQYAYGASKKTVLFNHVLRNVLIP 239 Query: 241 IITILGLDLPILVAGAALTESVFNWPGMGRWFVQMASEREYSVLMAITIVTAVMVVLGNL 300 IITI GL +P LV GA +TE+VF+WPG+G V +Y ++MAIT++++ M++LGNL Sbjct: 240 IITIFGLSIPSLVGGAFITETVFSWPGLGSLGVNAIFRFDYPIIMAITLLSSFMLILGNL 299 Query: 301 LADILYAIVDPRVKL 315 +ADILY +VDPR+++ Sbjct: 300 IADILYGVVDPRIRM 314 >ref|NP_654852.1| hypothetical protein predicted by GeneMark [Bacillus anthracis A2012] ref|NP_843418.1| oligopeptide ABC transporter, permease protein [Bacillus anthracis str. Ames] gb|AAP24904.1| oligopeptide ABC transporter, permease protein [Bacillus anthracis str. Ames] Length = 316 Score = 264 bits (675), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 128/315 (40%), Positives = 202/315 (64%), Gaps = 1/315 (0%) Query: 1 MTEYLIRRVLQSXXXXXXXXXXXXXXXHAAPGGPTQMMLSPGLSPEVFKQQAHNLGLDQP 60 M + + +R+L + APG P + ++P +SP ++ +LGLDQP Sbjct: 1 MYKVIAKRLLNAIPLLFVISIISFLLIKLAPGDPVRNFVTPNMSPIDVERIRKSLGLDQP 60 Query: 61 VPVQYVRWISGLLQGDLGYTFKNHLPVADLLWPRIGNTFILMGAAWLLSLIIAIPWGIYN 120 + +QY+ W+ +L G+ GY+ +NH PV DL+ R+ T LMG++ L+S +IAIP G++ Sbjct: 61 IYMQYILWLKNILTGNFGYSLQNHRPVLDLIVERLPATIGLMGSSLLVSFVIAIPLGLFT 120 Query: 121 STKVYGLSDQSASFISYLGFAMPTFWFGILLQQWFSLKLNWFPLSDMHTRGKEGDIGDLL 180 K + D+ +FISY+G +M FWF +LL FSLKLN P M T G++ + D++ Sbjct: 121 GVKKNSIFDRIVNFISYVGISMLVFWFALLLIYLFSLKLNLLPSMGMRTVGQD-SVWDIV 179 Query: 181 MHLVLPVTVLSLGFLASYMKYARASMLEVLDQDYIRTARAKGVKERKVVFHHALRNALIP 240 H +LP VL+ ++ YM+Y R+S ++ L++DY++ A G ++ V+F+H LRN LIP Sbjct: 180 QHGILPCMVLAFQNISVYMRYIRSSTIQQLEEDYVQIQYAYGASKKTVLFNHVLRNVLIP 239 Query: 241 IITILGLDLPILVAGAALTESVFNWPGMGRWFVQMASEREYSVLMAITIVTAVMVVLGNL 300 IITI GL +P LV GA +TE+VF+WPG+G V +Y ++MAIT++++ M++LGNL Sbjct: 240 IITIFGLSIPSLVGGAFITETVFSWPGLGSLGVNAIFRFDYPIIMAITLLSSFMLILGNL 299 Query: 301 LADILYAIVDPRVKL 315 +ADILY +VDPR+++ Sbjct: 300 IADILYGVVDPRIRM 314 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.325 0.140 0.436 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 454,059,743 Number of extensions: 18497505 Number of successful extensions: 57252 Number of sequences better than 1.0e-05: 1492 Number of HSP's gapped: 55721 Number of HSP's successfully gapped: 1499 Length of query: 323 Length of database: 757,237,578 Length adjustment: 126 Effective length of query: 197 Effective length of database: 415,135,104 Effective search space: 81781615488 Effective search space used: 81781615488 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 126 (53.1 bits)