BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0342.0002.p (317 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_658524.1| ABC_tran, ABC transporter [Bacillus anthracis A... 367 e-100 ref|NP_240894.1| oligopeptide ABC transporter (ATP-binding prote... 352 6e-96 ref|NP_693991.1| oligopeptide ABC transporter ATP-binding protei... 349 4e-95 ref|NP_228311.1| oligopeptide ABC transporter, ATP-binding prote... 340 2e-92 ref|ZP_00099896.1| COG0444: ABC-type dipeptide/oligopeptide/nick... 337 1e-91 >ref|NP_658524.1| ABC_tran, ABC transporter [Bacillus anthracis A2012] ref|NP_846943.1| oligopeptide ABC transporter, ATP-binding protein [Bacillus anthracis str. Ames] gb|AAP28429.1| oligopeptide ABC transporter, ATP-binding protein [Bacillus anthracis str. Ames] Length = 338 Score = 367 bits (942), Expect = e-100, Method: Compositional matrix adjust. Identities = 177/301 (58%), Positives = 230/301 (76%), Gaps = 3/301 (0%) Query: 2 KATDQISINVDKGQTVCLVGESGSGKSVTSLAIMRLIDYAGGMILEGNINFHGQDLAVKK 61 KA D ++ ++ KG+T+ +VGESG GKS+TSL+IMRLID G +EGNI F G+DL + Sbjct: 25 KAVDGLNFSISKGETLGIVGESGCGKSITSLSIMRLIDRESGSKVEGNILFKGKDLLQQN 84 Query: 62 QEEMRDIRGNRIAMIFQDPMSSLNPVFTVGEQIAESLQLHQQKSPKEAMQMAIDLLKLVG 121 + EMR IRGN+I+MIFQ+PM+SLNPV++VGEQIAE++++HQ+ S KEA A+D+LKLVG Sbjct: 85 ESEMRAIRGNQISMIFQEPMTSLNPVYSVGEQIAEAIRIHQKLSKKEAWNKAVDMLKLVG 144 Query: 122 IPAPEIRARQYPHELSGGMCQRIVIAIALACNPELLIADEPTTALDVTVQAQILDLLRKL 181 IP+PE RA+Q PHELSGGM QRI+IA+ALACNP+LLIADEPTTALDVT+QAQIL L++ L Sbjct: 145 IPSPEKRAKQEPHELSGGMRQRIMIAMALACNPDLLIADEPTTALDVTIQAQILSLMKSL 204 Query: 182 QAELGMSVLLITHDMGVAAEIADRIAVMYAGAIVEEGTVEEIFDHPSHPYTIGLLQSIPG 241 Q +LGM +++ITHD+GV +E DR+AVMYAG IVE +E IF P HPYTIGLLQS+P Sbjct: 205 QKQLGMGIIMITHDLGVVSETCDRVAVMYAGKIVEYADIEHIFTSPKHPYTIGLLQSLPS 264 Query: 242 FEGGRGGELYTIKGTIPPIGQLPPGCRFHPRCPHAMEVCSMKEPPDFMITED-HRTACWL 300 + + EL TI G++P +P GCRF R HA E+C P+ +T+D CW+ Sbjct: 265 LDTDQ-EELQTIPGSVPSPYHMPSGCRFADRYTHAKELCH-NTLPELQLTQDGSEVRCWM 322 Query: 301 F 301 F Sbjct: 323 F 323 >ref|NP_240894.1| oligopeptide ABC transporter (ATP-binding protein) [Bacillus halodurans] pir||D83653 oligopeptide ABC transporter (ATP-binding protein) BH0028 [imported] - Bacillus halodurans (strain C-125) dbj|BAB03747.1| oligopeptide ABC transporter (ATP-binding protein) [Bacillus halodurans] Length = 347 Score = 352 bits (903), Expect = 6e-96, Method: Compositional matrix adjust. Identities = 168/303 (55%), Positives = 228/303 (75%), Gaps = 4/303 (1%) Query: 1 VKATDQISINVDKGQTVCLVGESGSGKSVTSLAIMRLIDYAGGMILEGNINFHGQDLAVK 60 VKA D ++ +V KG+T+ +VGESGSGKS+TSL+I++LI G ++ G INF G++L K Sbjct: 29 VKAVDGVTFSVPKGKTLGIVGESGSGKSITSLSILKLIQEPGK-VVGGEINFKGENLVTK 87 Query: 61 KQEEMRDIRGNRIAMIFQDPMSSLNPVFTVGEQIAESLQLHQQKSPKEAMQMAIDLLKLV 120 + MR IRGN I+MIFQ+PM+SLNPV+TVG+QI+ES ++H++ KEA++ ++D+LKLV Sbjct: 88 NEAYMRKIRGNEISMIFQEPMTSLNPVYTVGQQISESFRIHEKLGKKEALKRSVDMLKLV 147 Query: 121 GIPAPEIRARQYPHELSGGMCQRIVIAIALACNPELLIADEPTTALDVTVQAQILDLLRK 180 GIP+PE R QYPHELSGGM QR++IA+ALACNPELLIADEPTTALDVT+QAQIL+L++ Sbjct: 148 GIPSPEKRVHQYPHELSGGMRQRVMIAMALACNPELLIADEPTTALDVTIQAQILELMKD 207 Query: 181 LQAELGMSVLLITHDMGVAAEIADRIAVMYAGAIVEEGTVEEIFDHPSHPYTIGLLQSIP 240 LQ LGMS+++ITHD+GV AE D +AVMY G +VE V+ +F +P HPYT+GLL S+P Sbjct: 208 LQDRLGMSIIMITHDLGVVAETCDYVAVMYCGKVVEYADVKTLFKNPRHPYTVGLLNSLP 267 Query: 241 GFE-GGRGGELYTIKGTIPPIGQLPPGCRFHPRCPHAMEVCSMKEPPDFMITED-HRTAC 298 + EL IKG +P +P GCRF PRCP A ++C + PD E+ ++ C Sbjct: 268 RHDIDLEDEELSVIKGNVPSPADMPEGCRFAPRCPFASDICK-ERLPDLETDENGNQIRC 326 Query: 299 WLF 301 W++ Sbjct: 327 WVY 329 >ref|NP_693991.1| oligopeptide ABC transporter ATP-binding protein [Oceanobacillus iheyensis HTE831] dbj|BAC15025.1| oligopeptide ABC transporter ATP-binding protein [Oceanobacillus iheyensis HTE831] Length = 347 Score = 349 bits (896), Expect = 4e-95, Method: Compositional matrix adjust. Identities = 168/301 (55%), Positives = 222/301 (73%), Gaps = 1/301 (0%) Query: 1 VKATDQISINVDKGQTVCLVGESGSGKSVTSLAIMRLIDYAGGMILEGNINFHGQDLAVK 60 VKA D +S ++ +G+ + +VGESGSGKS+TSL+I+RLI+ G I G I F G++L K Sbjct: 28 VKAVDGVSFSIPRGKVLGVVGESGSGKSITSLSILRLIEEPG-KIKGGEIKFKGENLLNK 86 Query: 61 KQEEMRDIRGNRIAMIFQDPMSSLNPVFTVGEQIAESLQLHQQKSPKEAMQMAIDLLKLV 120 + +MR IRGN I+MIFQ+PM+SLNP FTVG+QI E+ ++HQ + KEA Q +I++LKLV Sbjct: 87 SESQMRKIRGNEISMIFQEPMTSLNPTFTVGQQIGEAYKIHQGLNKKEAKQRSIEMLKLV 146 Query: 121 GIPAPEIRARQYPHELSGGMCQRIVIAIALACNPELLIADEPTTALDVTVQAQILDLLRK 180 GIP+PE R QYPHELSGGM QR++IA+ALACNP+LLIADEPTTALDVT+QAQILDL++ Sbjct: 147 GIPSPEKRVDQYPHELSGGMRQRVMIAMALACNPDLLIADEPTTALDVTIQAQILDLIKD 206 Query: 181 LQAELGMSVLLITHDMGVAAEIADRIAVMYAGAIVEEGTVEEIFDHPSHPYTIGLLQSIP 240 LQ +L M VLLITHD+GV AE D +AVMY G +VE + +F P HPYT+GL+QSIP Sbjct: 207 LQEQLDMGVLLITHDLGVVAETCDYVAVMYCGKVVEFTDKKSLFSSPKHPYTVGLMQSIP 266 Query: 241 GFEGGRGGELYTIKGTIPPIGQLPPGCRFHPRCPHAMEVCSMKEPPDFMITEDHRTACWL 300 + G+L IKG++P ++P GCRF PRCP A ++C K P ++ CW+ Sbjct: 267 QHDKDVEGDLSVIKGSVPSPAEMPKGCRFAPRCPFATDLCHEKLPNLETDENGNQIRCWI 326 Query: 301 F 301 + Sbjct: 327 Y 327 >ref|NP_228311.1| oligopeptide ABC transporter, ATP-binding protein [Thermotoga maritima] pir||D72371 oligopeptide ABC transporter, ATP-binding protein - Thermotoga maritima (strain MSB8) gb|AAD35586.1| oligopeptide ABC transporter, ATP-binding protein [Thermotoga maritima] Length = 327 Score = 340 bits (873), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 170/303 (56%), Positives = 223/303 (73%), Gaps = 3/303 (0%) Query: 1 VKATDQISINVDKGQTVCLVGESGSGKSVTSLAIMRLIDYAGGMILEGNINFHGQDLAVK 60 VKA D +S V +G+T+ +VGESGSGKSVTSL+IMRL+D G I++G I F G++L Sbjct: 15 VKAVDGVSFEVREGETLGIVGESGSGKSVTSLSIMRLLD-QNGKIVDGKIIFKGRNLLEL 73 Query: 61 KQEEMRDIRGNRIAMIFQDPMSSLNPVFTVGEQIAESLQLHQQKSPKEAMQMAIDLLKLV 120 + EMR IRG IAMIFQ+PM +LNPVFT+G+QI E++ LHQ S KEA +MAIDLL+ V Sbjct: 74 SENEMRKIRGKEIAMIFQEPMVALNPVFTIGDQIMEAIILHQNVSEKEARKMAIDLLRKV 133 Query: 121 GIPAPEIRARQYPHELSGGMCQRIVIAIALACNPELLIADEPTTALDVTVQAQILDLLRK 180 GIP PE R +YPH+LSGGM QR +IA+AL+C P LLIADEPTTALDVT+QAQIL+L+++ Sbjct: 134 GIPEPEKRVDEYPHQLSGGMRQRAMIAMALSCRPSLLIADEPTTALDVTIQAQILELMKE 193 Query: 181 LQAELGMSVLLITHDMGVAAEIADRIAVMYAGAIVEEGTVEEIFDHPSHPYTIGLLQSIP 240 LQ E GM+++LITHDMGV AE++D++AVMYAG +VE G V+ IF P HPYT LL+SIP Sbjct: 194 LQKEYGMAIILITHDMGVVAEMSDKVAVMYAGKVVEYGDVKTIFTEPKHPYTYALLESIP 253 Query: 241 GFEGGRGGELYTIKGTIPPIGQLPPGCRFHPRCPHAME-VCSMKEPPDFMITEDHRTACW 299 + + L +I G +P PPGC+FHPRC + C ++EP + +H+ C+ Sbjct: 254 RIDVEQ-ERLKSIPGNVPDPLNFPPGCKFHPRCEFFEKGKCDVEEPELEDLDGNHKVRCF 312 Query: 300 LFQ 302 +Q Sbjct: 313 FWQ 315 >ref|ZP_00099896.1| COG0444: ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Desulfitobacterium hafniense] Length = 319 Score = 337 bits (865), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 175/311 (56%), Positives = 216/311 (69%), Gaps = 1/311 (0%) Query: 5 DQISINVDKGQTVCLVGESGSGKSVTSLAIMRLIDYAGGMILEGNINFHGQDLAVKKQEE 64 D +S + KG+ V LVGESGSGKSV+SL+IMRL A + +I F G+DL K++E Sbjct: 2 DDVSFTIAKGEIVALVGESGSGKSVSSLSIMRLNAGAIKYRPDSSILFAGRDLLKLKEKE 61 Query: 65 MRDIRGNRIAMIFQDPMSSLNPVFTVGEQIAESLQLHQQKSPKEAMQMAIDLLKLVGIPA 124 +R IRGN IAMIFQDPMS+LNPV +G QIAE++ LH++ SPKEA + A++LL VGIP Sbjct: 62 LRKIRGNDIAMIFQDPMSALNPVHPIGRQIAEAILLHKKVSPKEAQKTALELLNKVGIPD 121 Query: 125 PEIRARQYPHELSGGMCQRIVIAIALACNPELLIADEPTTALDVTVQAQILDLLRKLQAE 184 + R + YPH+LSGGM QR +IAIALACNP+LLIADEPTTALDVT+Q+QIL+LLR LQ E Sbjct: 122 AQRRLKDYPHQLSGGMRQRAMIAIALACNPKLLIADEPTTALDVTIQSQILNLLRDLQKE 181 Query: 185 LGMSVLLITHDMGVAAEIADRIAVMYAGAIVEEGTVEEIFDHPSHPYTIGLLQSIPGFEG 244 G+S+LLITHD+GV AE ADR+ VMY G IVEEG VE+IF HP HPYT GL+ SIP G Sbjct: 182 FGISILLITHDLGVVAETADRVLVMYCGKIVEEGNVEDIFAHPQHPYTKGLMVSIPSLSG 241 Query: 245 GRGGELYTIKGTIPPIGQLPPGCRFHPRCPHAMEVCSMKEPPDFMITEDHRTACWLF-QG 303 L I G +P +LPPGC F RC AM C P +R +CWL G Sbjct: 242 PSKETLDAIPGVVPNPLELPPGCNFVTRCGSAMVKCHEAAPELEQHPSGNRVSCWLHTSG 301 Query: 304 KPVQADNKDGV 314 K D+++ Sbjct: 302 KGDDEDDREAT 312 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.320 0.137 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 467,492,397 Number of extensions: 19205264 Number of successful extensions: 111576 Number of sequences better than 1.0e-05: 17864 Number of HSP's gapped: 94468 Number of HSP's successfully gapped: 19045 Length of query: 317 Length of database: 757,237,578 Length adjustment: 125 Effective length of query: 192 Effective length of database: 417,850,203 Effective search space: 80227238976 Effective search space used: 80227238976 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 126 (53.1 bits)