BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0342.0001.p (339 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_624051.1| ABC-type dipeptide/oligopeptide/nickel transpor... 402 e-111 ref|NP_823941.1| putative ABC transporter ATP-binding protein [S... 400 e-110 ref|ZP_00018215.1| hypothetical protein [Chloroflexus aurantiacus] 397 e-109 ref|ZP_00021089.1| hypothetical protein [Chloroflexus aurantiacus] 395 e-109 ref|NP_241217.1| oligopeptide ABC transporter (ATP-binding prote... 395 e-108 >ref|NP_624051.1| ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Thermoanaerobacter tengcongensis] gb|AAM25655.1| ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Thermoanaerobacter tengcongensis] Length = 321 Score = 402 bits (1033), Expect = e-111, Method: Compositional matrix adjust. Identities = 189/312 (60%), Positives = 239/312 (76%) Query: 23 KDIRKYFPITKGLLNRTVGQVKAVDGVSLSIRRGETFGLVGESGCGKSTFGRVLLRLQSA 82 K+++KYFPI G+L RT+G VKAVDGVS +I +GET LVGESGCGKST GR ++RL Sbjct: 9 KNLKKYFPIRGGVLQRTIGYVKAVDGVSFTINKGETLSLVGESGCGKSTVGRTIIRLYDK 68 Query: 83 TGGEVLFCGRDIHSLRHQELRKLREEMQIIFQDPFGSLNPRFLVKDIIGEPLKIHRSMSA 142 T G+VLF G IHSL+ ELRKLR +MQ++FQDPF SLNPR + D +GE L H +S Sbjct: 69 TDGDVLFKGIPIHSLKKSELRKLRPKMQMVFQDPFSSLNPRLRIGDAVGEALLDHGLVSK 128 Query: 143 KEIDARVVELMELVGLDATRRNRYPHEFSGGQRQRIGIARAIALNPQFIVADEAVSALDV 202 E+ RV+E +E+ GL + +RYPHEFSGGQRQRIGIARA+ L+P+FIV DE VS+LDV Sbjct: 129 NELRDRVIEALEMCGLASYHIDRYPHEFSGGQRQRIGIARALILDPEFIVLDEPVSSLDV 188 Query: 203 SVQSQVINLLMKLQKELGLTFLFIAHGLNVVRHISDRVGVMYLGKLVEVAETEALFAAPL 262 S+Q+Q+INLLM LQ++ GLT+LFI+H L+VV HIS RV VMYLG +VE+A + LF PL Sbjct: 189 SIQAQIINLLMDLQQQKGLTYLFISHDLSVVEHISTRVAVMYLGNIVEMASRDELFDHPL 248 Query: 263 HPYTAALLSAIPKPTPRRKHDRIVLQGDVPSPANPPSGCRFHTRCPLAQEKCRQQEPLLE 322 HPYT ALLSA+P P P K +RI+L+GD+PSPANPP GC+FHTRCP A++ C++Q P Sbjct: 249 HPYTQALLSAVPIPDPDLKRERIILEGDIPSPANPPKGCKFHTRCPFAKDICKEQVPEFR 308 Query: 323 ELQPGRRVACHF 334 ++ G VACH Sbjct: 309 DVGGGHYVACHL 320 >ref|NP_823941.1| putative ABC transporter ATP-binding protein [Streptomyces avermitilis MA-4680] dbj|BAC70476.1| putative ABC transporter ATP-binding protein [Streptomyces avermitilis MA-4680] Length = 508 Score = 400 bits (1027), Expect = e-110, Method: Compositional matrix adjust. Identities = 187/314 (59%), Positives = 235/314 (74%), Gaps = 3/314 (0%) Query: 25 IRKYFPITKGLLNRTVGQVKAVDGVSLSIRRGETFGLVGESGCGKSTFGRVLLRLQSATG 84 + K+FPI KG+L R V VKAVDG+ +RRGET G+VGESGCGKST GRV+ RLQ TG Sbjct: 35 LTKHFPIKKGILQRQVAAVKAVDGIDFEVRRGETLGVVGESGCGKSTMGRVITRLQDPTG 94 Query: 85 GEVLFCGRDIHSLRHQELRKLREEMQIIFQDPFGSLNPRFLVKDIIGEPLKIHRSMSAKE 144 G + F G+DI L +R LR ++Q+IFQDP+GSLNPR + I+ P ++ Sbjct: 95 GTIEFEGKDITRLSTAGMRPLRRDIQMIFQDPYGSLNPRHTIGSIVSAPFRLQGVEPEGG 154 Query: 145 IDARVVELMELVGLDATRRNRYPHEFSGGQRQRIGIARAIALNPQFIVADEAVSALDVSV 204 + V L+ELVGL NRYPHEFSGGQRQRIGIARA+AL P+ +VADE VSALDVS+ Sbjct: 155 VKKEVQRLLELVGLSPEHFNRYPHEFSGGQRQRIGIARALALKPKLVVADEPVSALDVSI 214 Query: 205 QSQVINLLMKLQKELGLTFLFIAHGLNVVRHISDRVGVMYLGKLVEVAETEALFAAPLHP 264 Q+QV+NL+ LQ ELGLT++ IAH L+VVRH+SDR+ VMYLGK+VE+A+ +L+ AP+HP Sbjct: 215 QAQVVNLMDDLQSELGLTYVIIAHDLSVVRHVSDRIAVMYLGKIVELADRTSLYEAPMHP 274 Query: 265 YTAALLSAIPKPTPRR---KHDRIVLQGDVPSPANPPSGCRFHTRCPLAQEKCRQQEPLL 321 YT AL+SA+P P P+R K +RI+L+GDVPSP +PPSGCRFHTRC A E CR EP L Sbjct: 275 YTKALMSAVPVPDPKRRGAKSERILLKGDVPSPISPPSGCRFHTRCWKATEICRTTEPPL 334 Query: 322 EELQPGRRVACHFP 335 EL+PG++VACH P Sbjct: 335 LELKPGQQVACHHP 348 >ref|ZP_00018215.1| hypothetical protein [Chloroflexus aurantiacus] Length = 334 Score = 397 bits (1021), Expect = e-109, Method: Compositional matrix adjust. Identities = 188/312 (60%), Positives = 237/312 (75%) Query: 23 KDIRKYFPITKGLLNRTVGQVKAVDGVSLSIRRGETFGLVGESGCGKSTFGRVLLRLQSA 82 ++++KYFPI G L RT+ +V+AVD VS +++RGET GLVGESGCGK+T GR +LRL+ A Sbjct: 19 RNLKKYFPIKGGFLRRTIAEVRAVDDVSFTVKRGETLGLVGESGCGKTTTGRTVLRLERA 78 Query: 83 TGGEVLFCGRDIHSLRHQELRKLREEMQIIFQDPFGSLNPRFLVKDIIGEPLKIHRSMSA 142 T GEV+F G+D+ + ++ LR +MQIIFQDP+ SL+PR + + + E L IH + Sbjct: 79 TAGEVIFEGQDVMRASGRTMKALRRDMQIIFQDPYASLDPRITIGESVAEGLVIHGIGTP 138 Query: 143 KEIDARVVELMELVGLDATRRNRYPHEFSGGQRQRIGIARAIALNPQFIVADEAVSALDV 202 E RV E++ VGL A+ +R+PHEFSGGQRQRIGIARA+ + P+ IV DE VSALDV Sbjct: 139 AERRERVREVLAKVGLSASHMSRFPHEFSGGQRQRIGIARALIMEPKLIVCDEPVSALDV 198 Query: 203 SVQSQVINLLMKLQKELGLTFLFIAHGLNVVRHISDRVGVMYLGKLVEVAETEALFAAPL 262 S+QSQV+NLL LQ+E GLT+LFIAH L VV HISDRVGVMYLGK+VE+ +E LF PL Sbjct: 199 SIQSQVLNLLRSLQREFGLTYLFIAHNLAVVEHISDRVGVMYLGKMVELTTSEELFREPL 258 Query: 263 HPYTAALLSAIPKPTPRRKHDRIVLQGDVPSPANPPSGCRFHTRCPLAQEKCRQQEPLLE 322 HPYT AL+SAIP P P K +RIVLQGDVPSP NPPSGCRFH RC +A+ C++QEP+ E Sbjct: 259 HPYTKALISAIPNPNPFAKRERIVLQGDVPSPINPPSGCRFHPRCWIAKSICKEQEPVFE 318 Query: 323 ELQPGRRVACHF 334 E + G VACHF Sbjct: 319 EKRKGHWVACHF 330 >ref|ZP_00021089.1| hypothetical protein [Chloroflexus aurantiacus] Length = 371 Score = 395 bits (1016), Expect = e-109, Method: Compositional matrix adjust. Identities = 190/313 (60%), Positives = 240/313 (76%), Gaps = 3/313 (0%) Query: 23 KDIRKYFPITKGLL-NRTVGQVKAVDGVSLSIRRGETFGLVGESGCGKSTFGRVLLRLQS 81 KD+R YFP+T+G++ R VG VKAVDGVS SI+RGET GLVGESGCGKST GR +L+L Sbjct: 20 KDLRMYFPVTRGIIFQRRVGTVKAVDGVSFSIKRGETLGLVGESGCGKSTTGRAILQLYR 79 Query: 82 ATGGEVLFCGRDIHSLRHQELRKLREEMQIIFQDPFGSLNPRFLVKDIIGEPLKIHRSMS 141 T G+VLF G D+ L+ LR++R +Q+IFQDP+ SLNPR V DII EP+++H+ Sbjct: 80 PTSGQVLFEGTDLTKLKGNALRQMRRRVQMIFQDPYASLNPRMTVGDIIAEPIRVHKLRE 139 Query: 142 AKEIDARVVELMELVGLDATRRNRYPHEFSGGQRQRIGIARAIALNPQFIVADEAVSALD 201 + + RV EL+ LVGL+ NRYPHEFSGGQRQRIGIARA+A+ P F+V DE VSALD Sbjct: 140 GRAVRERVEELLHLVGLNPAFANRYPHEFSGGQRQRIGIARALAVEPDFVVCDEPVSALD 199 Query: 202 VSVQSQVINLLMKLQKELGLTFLFIAHGLNVVRHISDRVGVMYLGKLVEVAETEALFAAP 261 VS+Q+QV+NLL +LQ +LGLT+LFIAH L+VV HISDRV VMYLGK+VE+AE L++ P Sbjct: 200 VSIQAQVVNLLEELQDKLGLTYLFIAHDLSVVNHISDRVAVMYLGKVVELAEGPKLYSMP 259 Query: 262 LHPYTAALLSAIPKPTPR--RKHDRIVLQGDVPSPANPPSGCRFHTRCPLAQEKCRQQEP 319 LHPYT ALLSA+P P P+ ++ RI+L+GDVPSP NPP GC FHTRCP+A +KC+++EP Sbjct: 260 LHPYTQALLSAVPIPDPKVEKQRRRIILEGDVPSPLNPPPGCHFHTRCPIAIQKCKEEEP 319 Query: 320 LLEELQPGRRVAC 332 + G AC Sbjct: 320 PFVDYGNGHFAAC 332 >ref|NP_241217.1| oligopeptide ABC transporter (ATP-binding protein) [Bacillus halodurans] pir||G83693 oligopeptide ABC transporter (ATP-binding protein) appF [imported] - Bacillus halodurans (strain C-125) dbj|BAB04070.1| oligopeptide ABC transporter (ATP-binding protein) [Bacillus halodurans] Length = 332 Score = 395 bits (1014), Expect = e-108, Method: Compositional matrix adjust. Identities = 186/319 (58%), Positives = 239/319 (74%), Gaps = 2/319 (0%) Query: 23 KDIRKYFPITKGLLNRTVGQVKAVDGVSLSIRRGETFGLVGESGCGKSTFGRVLLRLQSA 82 K + K+F +++G R ++AVDGV L+I GET G+VGESGCGKST G++L+RL Sbjct: 9 KGLTKHFDVSEGFFKRKKAVLRAVDGVDLTIYAGETLGIVGESGCGKSTLGQLLMRLLEP 68 Query: 83 TGGEVLFCGRDIHSLRHQELRKLREEMQIIFQDPFGSLNPRFLVKDIIGEPLKIHRSMSA 142 T G + F G D +L+ + LR+ R ++QIIFQDPF SLNPR V++IIGEPLK HR Sbjct: 69 TRGTLSFAGSDFLALKGEALRQKRSDIQIIFQDPFSSLNPRMTVREIIGEPLKTHRLAKG 128 Query: 143 KEIDARVVELMELVGLDATRRNRYPHEFSGGQRQRIGIARAIALNPQFIVADEAVSALDV 202 ++ RV ELM+ VGLD + RYPHEFSGGQRQRIGIARAIAL P+ I+ DE VSALDV Sbjct: 129 NDLIKRVDELMDAVGLDRSYAKRYPHEFSGGQRQRIGIARAIALKPKLIICDEPVSALDV 188 Query: 203 SVQSQVINLLMKLQKELGLTFLFIAHGLNVVRHISDRVGVMYLGKLVEVAETEALFAAPL 262 S+Q+Q++NL+++LQKE LTFLFIAHGL V+HISDR+ VMYLGK+VE+A +ALFA P+ Sbjct: 189 SIQAQILNLMVRLQKEFQLTFLFIAHGLPAVKHISDRMAVMYLGKVVELASKDALFAQPM 248 Query: 263 HPYTAALLSAIPKPTPRRKHDR--IVLQGDVPSPANPPSGCRFHTRCPLAQEKCRQQEPL 320 HPY+ L+ A+P P P ++D+ + L+GD+PSP +PPSGCRFH RCP AQ+KC QEP Sbjct: 249 HPYSEGLIQAVPIPDPTVRNDKKWVTLEGDLPSPVHPPSGCRFHPRCPYAQDKCTVQEPA 308 Query: 321 LEELQPGRRVACHFPLASS 339 L E +PG VACHFPL + Sbjct: 309 LTEKEPGHFVACHFPLEKT 327 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.322 0.139 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 456,379,005 Number of extensions: 18810596 Number of successful extensions: 110196 Number of sequences better than 1.0e-05: 18794 Number of HSP's gapped: 90907 Number of HSP's successfully gapped: 19905 Length of query: 339 Length of database: 757,237,578 Length adjustment: 126 Effective length of query: 213 Effective length of database: 415,135,104 Effective search space: 88423777152 Effective search space used: 88423777152 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 126 (53.1 bits)