BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0341.0030.p (277 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|AAF66545.1| unknown [Geobacillus thermoglucosidasius] 173 4e-42 ref|NP_241296.1| BH0430~unknown conserved protein [Bacillus halo... 135 1e-30 ref|NP_979200.1| MTA/SAH nucleosidase / phosphatase, putative [B... 130 3e-29 ref|NP_656748.1| PNP_UDP_1, Phosphorylase family [Bacillus anthr... 130 3e-29 ref|ZP_00184341.1| hypothetical protein Exigu003201 [Exiguobacte... 121 2e-26 >gb|AAF66545.1| unknown [Geobacillus thermoglucosidasius] Length = 224 Score = 173 bits (439), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 95/211 (45%), Positives = 129/211 (61%), Gaps = 2/211 (0%) Query: 58 PEAIIFDMDGTLFQTESLLLPAYHKMFDILRAEGLYAGPTPPEERILSSLGMLLSQIWKN 117 P AIIFDMDGTLFQTE++L+PA HK F LR EGL+ G TP EE L LG+ + ++W+ Sbjct: 5 PFAIIFDMDGTLFQTETVLVPALHKTFGRLRREGLWQGDTPVEE-YLRILGVPIPEVWRQ 63 Query: 118 VMPDADEAVHRRADXXXXXXXXXXXXXXXTLLYPKVTETLVALHERGVKLFVASNGLEDY 177 +MP+ E V RA LYP V TL AL ++G+ LFVASNG + Y Sbjct: 64 LMPEESEGVRDRAAAWFLDDIIDEIRQGNGRLYPDVHTTLAALADQGIPLFVASNGRQRY 123 Query: 178 IHSIVVVHELKELFDGLYSAGGQGTATKTELLRILLDEHGIKEAWMVGDRSSDVEAGKGN 237 + +I L+ F YS +K+ L++ LL+++GI++A MVGDR SD++A K N Sbjct: 124 LAAIRTAFLLERYFIDFYSLDRFSLMSKSALVKQLLNDYGIEKAVMVGDRRSDIQAAKDN 183 Query: 238 GQTVIGCAYAGFGRQDELKGSDVIISSFDEL 268 G IGC + GF +EL+G+DVII F E+ Sbjct: 184 GIWSIGCRF-GFANDEELRGADVIIHQFSEI 213 >ref|NP_241296.1| BH0430~unknown conserved protein [Bacillus halodurans] pir||F83703 hypothetical protein BH0430 [imported] - Bacillus halodurans (strain C-125) dbj|BAB04149.1| BH0430~unknown conserved protein [Bacillus halodurans] Length = 223 Score = 135 bits (339), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 82/209 (39%), Positives = 113/209 (54%), Gaps = 2/209 (0%) Query: 60 AIIFDMDGTLFQTESLLLPAYHKMFDILRAEGLYAGPTPPEERILSSLGMLLSQIWKNVM 119 IIFDMDGTLFQT+S+L A K FD LR + G TP E+ L+ LG + +W+ +M Sbjct: 3 TIIFDMDGTLFQTDSVLEGALEKTFDYLRQTDRWQGETPIEQ-YLAILGAPMHVVWETIM 61 Query: 120 PDADEAVHRRADXXXXXXXXXXXXXXXTLLYPKVTETLVALHERGVKLFVASNGLEDYIH 179 P A + AD LYP V +TL L++ G L+VASNG Y+ Sbjct: 62 PSASHEERQVADQAFWDFLLEEIRLDHGKLYPNVGKTLEELYQLGYDLYVASNGFMRYLQ 121 Query: 180 SIVVVHELKELFDGLYSAGGQGTATKTELLRILLDEHGIKEAWMVGDRSSDVEAGKGNGQ 239 +IV + +Y A TA+KTEL+ L+ ++ I+ MVGDRSSD+ AG Sbjct: 122 AIVDHYGFTSYLKDIYGADRFETASKTELVAKLVRDYRIEGGVMVGDRSSDLTAGADAKL 181 Query: 240 TVIGCAYAGFGRQDELKGSDVIISSFDEL 268 IGC Y G+G +DEL +DV++ E+ Sbjct: 182 VTIGCLY-GYGTKDELDSADVLVEDISEI 209 >ref|NP_979200.1| MTA/SAH nucleosidase / phosphatase, putative [Bacillus cereus ATCC 10987] gb|AAS41808.1| MTA/SAH nucleosidase / phosphatase, putative [Bacillus cereus ATCC 10987] Length = 458 Score = 130 bits (327), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 72/213 (33%), Positives = 116/213 (54%), Gaps = 2/213 (0%) Query: 59 EAIIFDMDGTLFQTESLLLPAYHKMFDILRAEGLYAGPTPPEERILSSLGMLLSQIWKNV 118 +A IFDMDGTLFQT+ +L + FD LR+ L+ TP E + +G+ L ++W+ + Sbjct: 242 QAFIFDMDGTLFQTDKILELSLDDTFDHLRSLQLWDTVTPIE-KYREIMGVPLPKVWETL 300 Query: 119 MPDADEAVHRRADXXXXXXXXXXXXXXXTLLYPKVTETLVALHERGVKLFVASNGLEDYI 178 +P+ V + D LYP V E + E +++ASNGL +Y+ Sbjct: 301 LPNHSIEVREQTDAYFLERLIENIKSGKGALYPNVKEIFTYIKENNCSIYIASNGLTEYL 360 Query: 179 HSIVVVHELKELFDGLYSAGGQGTATKTELLRILLDEHGIKEAWMVGDRSSDVEAGKGNG 238 +IV + L + +S + K++L++ +L+++ IKEA +VGDR SD+ A K NG Sbjct: 361 RAIVSYYALDQWVTETFSIEQINSLNKSDLVKSILNKYDIKEAAIVGDRLSDINAAKDNG 420 Query: 239 QTVIGCAYAGFGRQDELKGSDVIISSFDELIGL 271 IGC + F ++DEL +D++I EL G+ Sbjct: 421 LFAIGCNF-DFAQEDELVQADIVIDDLMELKGI 452 >ref|NP_656748.1| PNP_UDP_1, Phosphorylase family [Bacillus anthracis A2012] ref|NP_845207.1| MTA/SAH nucleosidase / phosphatase, putative [Bacillus anthracis str. Ames] gb|AAP26693.1| MTA/SAH nucleosidase / phosphatase, putative [Bacillus anthracis str. Ames] Length = 459 Score = 130 bits (327), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 70/210 (33%), Positives = 116/210 (55%), Gaps = 2/210 (0%) Query: 59 EAIIFDMDGTLFQTESLLLPAYHKMFDILRAEGLYAGPTPPEERILSSLGMLLSQIWKNV 118 +A+IFDMDGTLFQT+ +L + FD LR+ L+ TP + + +G+ L ++W+ + Sbjct: 242 QALIFDMDGTLFQTDKILELSLDDTFDHLRSLQLWDTVTPID-KYREIMGVPLPKVWEAL 300 Query: 119 MPDADEAVHRRADXXXXXXXXXXXXXXXTLLYPKVTETLVALHERGVKLFVASNGLEDYI 178 +PD + + D LYP V E + E +++ASNGL +Y+ Sbjct: 301 LPDHSLEIREQTDAYFLERLIENIKSGKGALYPNVKEIFTYIKENNCSIYIASNGLTEYL 360 Query: 179 HSIVVVHELKELFDGLYSAGGQGTATKTELLRILLDEHGIKEAWMVGDRSSDVEAGKGNG 238 +IV ++L + +S + K++L++ +L+++ IKEA +VGDR SD+ A K NG Sbjct: 361 RAIVSYYDLDQWVTETFSIEQINSLNKSDLVKSILNKYDIKEAAVVGDRLSDINAAKDNG 420 Query: 239 QTVIGCAYAGFGRQDELKGSDVIISSFDEL 268 IGC + F ++DEL +D++I EL Sbjct: 421 LIAIGCNF-DFAQEDELAQADIVIDDLLEL 449 >ref|ZP_00184341.1| hypothetical protein Exigu003201 [Exiguobacterium sp. 255-15] Length = 220 Score = 121 bits (303), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 74/213 (34%), Positives = 109/213 (51%), Gaps = 2/213 (0%) Query: 59 EAIIFDMDGTLFQTESLLLPAYHKMFDILRAEGLYAGPTPPEERILSSLGMLLSQIWKNV 118 +A IFDMDGTLFQT +L A FD LR G + G TP E + +G+ L ++W+ + Sbjct: 3 QAYIFDMDGTLFQTNRILGHALEDAFDFLRMNGRWTGKTPLAE-YQTIMGVSLPEVWQTL 61 Query: 119 MPDADEAVHRRADXXXXXXXXXXXXXXXTLLYPKVTETLVALHERGVKLFVASNGLEDYI 178 +P + D LY TL AL E G L++ASNG + Y+ Sbjct: 62 LPGHSDEERALVDRIFQDALIRHIEQGQGALYSGAEATLQALKETGHPLYIASNGWKVYL 121 Query: 179 HSIVVVHELKELFDGLYSAGGQGTATKTELLRILLDEHGIKEAWMVGDRSSDVEAGKGNG 238 +IV + L DG+YS ++ K++L+ +L EH + + +VGDR SD +A K N Sbjct: 122 TAIVRQYGLNRWLDGVYSIEDVASSQKSDLVAYILSEHQLTDMVVVGDRISDFQAAKVNR 181 Query: 239 QTVIGCAYAGFGRQDELKGSDVIISSFDELIGL 271 +GC + F + EL+ +DVII EL + Sbjct: 182 LPAVGCRF-DFSNEAELEQADVIIDDLRELFQI 213 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.318 0.137 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 399,783,945 Number of extensions: 15677575 Number of successful extensions: 38985 Number of sequences better than 1.0e-05: 22 Number of HSP's gapped: 39064 Number of HSP's successfully gapped: 22 Length of query: 277 Length of database: 757,237,578 Length adjustment: 124 Effective length of query: 153 Effective length of database: 420,565,302 Effective search space: 64346491206 Effective search space used: 64346491206 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 125 (52.8 bits)