BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0341.0024.p (296 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_693490.1| multiple sugar-binding transport system permeas... 183 3e-45 sp|P37730|AMYD_THETU Potential starch degradation products trans... 182 6e-45 ref|NP_631225.1| putative sugar-transporter integral membrane pr... 167 4e-40 ref|ZP_00183401.1| hypothetical protein Exigu117701 [Exiguobacte... 166 8e-40 ref|ZP_00070455.1| COG1175: ABC-type sugar transport systems, pe... 161 2e-38 >ref|NP_693490.1| multiple sugar-binding transport system permease [Oceanobacillus iheyensis HTE831] dbj|BAC14525.1| multiple sugar-binding transport system permease [Oceanobacillus iheyensis HTE831] Length = 286 Score = 183 bits (465), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 100/286 (34%), Positives = 159/286 (55%), Gaps = 3/286 (1%) Query: 10 REKLDFGLFTLPVLICIAVAFYIPFVMTIRYSMTKWNGISKHPKFVGLDNFQQIFTGDSN 69 L F LF P L+ + + ++PF+ YS T WNG+ + F+G +N+ ++F + + Sbjct: 3 NRSLSFWLFMTPTLVALGLVVFVPFIYGFVYSFTDWNGLQAN-SFLGFENYIRLFQ-EEH 60 Query: 70 FANSAWFTIKXXXXXXXXXXXXXXXXXXXXDMKLKSTSWLRAAFFIPYILSLVIVGFIWK 129 F N+ WFTIK KLK+++ R FF+P ++ +I+GFIW+ Sbjct: 61 FLNAIWFTIKFAVVSIVLVNVIGLGLALLVTQKLKTSNLFRTVFFMPNLIGGLILGFIWQ 120 Query: 130 FIFMQGFNSLGESTGWSFFGLSWLGTPGLAFISILGVSIWQSIGFYLVIYIAGLQSVPDD 189 FIF+ FNS G+ G F WL F ++ ++ WQ G+ ++IYIA L++VP + Sbjct: 121 FIFVSAFNSAGQLLGLEFLQ-GWLSDATTGFWGLVILNAWQYGGYIMIIYIAYLEAVPQE 179 Query: 190 LKEAATVDGAGAMRRFFSITLPLLAPSITISVFMALTNSIKVFDVILSLXXXXXXXXXYS 249 L EA+ +DGA +RF+ +T PL+AP+ TIS+F+ L+N+ K++D L+L Sbjct: 180 LMEASEIDGANPFQRFWKVTFPLVAPAFTISMFLTLSNAFKMYDQNLALTGGGPFKSTEM 239 Query: 250 IAYDIYRDTFQNNLYGYGTAKALILFLAVLVVTIIQLTVFKRREVE 295 IA DIY F + + AKA+I F+ V V + Q+ K+REV+ Sbjct: 240 IAMDIYNTAFSDYDMAFAQAKAVIFFILVAAVALTQVYYNKKREVD 285 >sp|P37730|AMYD_THETU Potential starch degradation products transport system permease protein amyD pir||S37704 amyD protein - Thermoanaerobacterium thermosulfurigenes gb|AAB00843.1| membrane protein for maltose transport [Thermoanaerobacterium thermosulfurigenes] prf||1802282A sugar transport protein Length = 292 Score = 182 bits (463), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 102/279 (36%), Positives = 163/279 (58%), Gaps = 3/279 (1%) Query: 17 LFTLPVLICIAVAFYIPFVMTIRYSMTKWNGISKHPKFVGLDNFQQIFTGDSNFANSAWF 76 LF P L+ + + IPF++ I YS T WNGI++ P F+GL NF + D+ F NS F Sbjct: 16 LFIAPTLLSLIIVVLIPFIIGIYYSFTDWNGINQ-PVFIGLKNFMTL-RDDAEFWNSIIF 73 Query: 77 TIKXXXXXXXXXXXXXXXXXXXXDMKLKSTSWLRAAFFIPYILSLVIVGFIWKFIFMQGF 136 T K K+ + +++R AF++P ++ +I+GFIW FIF+ F Sbjct: 74 TAKFAVACIVIINVVGLSLAMLVTRKIFARNFMRTAFYLPNLIGGLILGFIWNFIFVDVF 133 Query: 137 NSLGESTGWSFFGLSWLGTPGLAFISILGVSIWQSIGFYLVIYIAGLQSVPDDLKEAATV 196 ++ ++T + G WL T F ++ V+ WQ IG+ +VIYIA ++S+P DL EA+ + Sbjct: 134 QTISDATHIGWLG-GWLSTTNTGFWGLVIVTSWQMIGYVMVIYIAYIESIPTDLIEASKI 192 Query: 197 DGAGAMRRFFSITLPLLAPSITISVFMALTNSIKVFDVILSLXXXXXXXXXYSIAYDIYR 256 DGA + ++F ++ PL+AP+ T+S+F+ L+NS K+FD LSL I +IY+ Sbjct: 193 DGANSWQQFRNVVFPLIAPAFTVSLFITLSNSFKLFDQNLSLTAGAPGNTTQMITLNIYQ 252 Query: 257 DTFQNNLYGYGTAKALILFLAVLVVTIIQLTVFKRREVE 295 F G AKA+I+FL + V+++IQ+ + ++REVE Sbjct: 253 TAFSAQEMAVGQAKAVIMFLIIAVISVIQVYLTQKREVE 291 >ref|NP_631225.1| putative sugar-transporter integral membrane protein [Streptomyces coelicolor A3(2)] emb|CAC01655.1| putative sugar-transporter integral membrane protein [Streptomyces coelicolor A3(2)] Length = 310 Score = 167 bits (422), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 98/290 (33%), Positives = 155/290 (53%), Gaps = 6/290 (2%) Query: 8 RWREKLDFGLFTLPVLICIAVAFYIPFVMTIRYSMTKWNGISKHPKFVGLDNFQQIFTGD 67 R R++L L T P + V +P V++ S+T W+G + HP VGLD+++ + D Sbjct: 21 RGRDRLTGLLMTAPAVALFLVMMVVPLVLSGYLSLTDWDGYTAHPAMVGLDHYRALLD-D 79 Query: 68 SNFANSAWFTIKXXXXXXXXXXXXXXXXXXXXDMKLKSTSWLRAAFFIPYILSLVIVGFI 127 +AW T+ ++ + LR FF PY++S +I+GF+ Sbjct: 80 PEVRQAAWITVLLAVIGTLAVNAVGLALALAISTPGRTNTVLRTVFFYPYVISALIIGFL 139 Query: 128 WKFIFMQ--GFNSLGESTGWSFFGLSWLGTPGLAFISILGVSIWQSIGFYLVIYIAGLQS 185 W + NS+ + G + GL +L PG A S++GV +W GF LV+YIAGL + Sbjct: 140 WSALLSTNGAVNSVLRAAGHA--GLPFLSQPGWALASLIGVVVWSGFGFTLVLYIAGLHT 197 Query: 186 VPDDLKEAATVDGAGAMRRFFSITLPLLAPSITISVFMALTNSIKVFDVILSLXXXXXXX 245 VP L EAA +DGAG R S+TLP++AP +T++V + L ++ +D++LSL Sbjct: 198 VPASLLEAARIDGAGRWRILRSVTLPMIAPVVTVNVVLTLVTLLRSYDLVLSLTGGGPAG 257 Query: 246 XXYSIAYDIYRDTFQNNLYGYGTAKALILFLAVLVVTIIQLTVFKRREVE 295 + AY I +FQNN GYG+A++++L L V + + +T +RR E Sbjct: 258 STQTAAYLILAQSFQNNALGYGSAQSMVLTL-VTGIAALAITFLRRRADE 306 >ref|ZP_00183401.1| hypothetical protein Exigu117701 [Exiguobacterium sp. 255-15] Length = 182 Score = 166 bits (419), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 83/182 (45%), Positives = 123/182 (67%) Query: 115 IPYILSLVIVGFIWKFIFMQGFNSLGESTGWSFFGLSWLGTPGLAFISILGVSIWQSIGF 174 +P ++ +I+GF+W+FI+++GF S+GE TGWS F L WLG F I+ VSIWQ G+ Sbjct: 1 MPNLIGGLILGFVWQFIYVKGFASIGELTGWSLFELPWLGDARTGFWGIVIVSIWQGGGY 60 Query: 175 YLVIYIAGLQSVPDDLKEAATVDGAGAMRRFFSITLPLLAPSITISVFMALTNSIKVFDV 234 +VIYIA LQ+VP +L EAA +DGA + +IT+PL+ PS+TI +F+ ++ S K+FD Sbjct: 61 IMVIYIAALQNVPQELIEAAKIDGANRLSTLRNITIPLIMPSVTICLFLTISWSFKLFDT 120 Query: 235 ILSLXXXXXXXXXYSIAYDIYRDTFQNNLYGYGTAKALILFLAVLVVTIIQLTVFKRREV 294 LSL +A +IY+++F NN G G+AKA+I F+ V +T+ Q+ + K+REV Sbjct: 121 NLSLTNGGPFKSTEMLALNIYKESFTNNNLGLGSAKAIIFFVVVAAITVTQVYLTKKREV 180 Query: 295 EA 296 EA Sbjct: 181 EA 182 >ref|ZP_00070455.1| COG1175: ABC-type sugar transport systems, permease components [Oenococcus oeni MCW] Length = 298 Score = 161 bits (407), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 103/284 (36%), Positives = 158/284 (55%), Gaps = 3/284 (1%) Query: 10 REKLDFGLFTLPVLICIAVAFYIPFVMTIRYSMTKWNGISKHPKFVGLDNFQQIFTGDSN 69 + L F L T+P+ I + IPF+ + YS T W G FVGL N+ +F+ +++ Sbjct: 13 KISLTFYLMTVPMAILFFIFHTIPFLRGVFYSFTDWKGFGNW-HFVGLRNYGYMFS-NAD 70 Query: 70 FANSAWFTIKXXXXXXXXXXXXXXXXXXXXDMKLKSTSWLRAAFFIPYILSLVIVGFIWK 129 ++ FT K K+K + L+A +F+PY+L +IVGFI+ Sbjct: 71 IGSAYGFTFKFAVFATIFVNVIALLIALGLTSKIKFQNTLKAVYFLPYMLGTLIVGFIFN 130 Query: 130 FIFMQGFNSLGESTGWSFFGLSWLGTPGLAFISILGVSIWQSIGFYLVIYIAGLQSVPDD 189 FIF LG++ WSF + LGT A+I IL V+IWQ + F +IY++GLQSV + Sbjct: 131 FIFGNLLPDLGKALHWSFLTTNILGTSH-AWIGILIVTIWQGLAFNTLIYMSGLQSVSPE 189 Query: 190 LKEAATVDGAGAMRRFFSITLPLLAPSITISVFMALTNSIKVFDVILSLXXXXXXXXXYS 249 L EAA++DGAGA ++F+ IT PL+AP TI++ +++ + VFD I+++ S Sbjct: 190 LYEAASLDGAGAWKKFWRITFPLIAPFFTINLVLSVKGYLMVFDQIMAMTSGGPGNSTTS 249 Query: 250 IAYDIYRDTFQNNLYGYGTAKALILFLAVLVVTIIQLTVFKRRE 293 I+ IY FQ + + +A A++LFL V V + QL V +RE Sbjct: 250 ISVLIYTQGFQGSQFAIQSANAVVLFLIVAGVFLFQLNVLNKRE 293 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.330 0.143 0.446 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 383,374,449 Number of extensions: 13960449 Number of successful extensions: 70219 Number of sequences better than 1.0e-05: 1208 Number of HSP's gapped: 68964 Number of HSP's successfully gapped: 1208 Length of query: 296 Length of database: 757,237,578 Length adjustment: 125 Effective length of query: 171 Effective length of database: 417,850,203 Effective search space: 71452384713 Effective search space used: 71452384713 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 125 (52.8 bits)