BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0341.0021.p (197 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_815882.1| ABC transporter, substrate-binding protein [Ent... 86 7e-16 ref|NP_607659.1| conserved hypothetical protein [Streptococcus p... 79 8e-14 ref|NP_267651.1| sugar ABC transporter substrate binding protein... 78 9e-14 ref|NP_561946.1| conserved hypothetical protein [Clostridium per... 78 1e-13 ref|NP_665093.1| putative sugar ABC transporter substrate bindin... 77 2e-13 >ref|NP_815882.1| ABC transporter, substrate-binding protein [Enterococcus faecalis V583] gb|AAO81952.1| ABC transporter, substrate-binding protein [Enterococcus faecalis V583] Length = 488 Score = 85.5 bits (210), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 62/181 (34%), Positives = 91/181 (50%), Gaps = 10/181 (5%) Query: 21 KIAAIATQNGMSIHATSKNAERSLMLIDLLQNDKEIHDLTMYGIAGTNYIPEGDDKYKAG 80 K A A + TSKN E+S+ L+ LL ++ E+ + +YG G Y GDD+ K Sbjct: 313 KTTAQAQMANYVVANTSKNKEKSVELLGLLNSNPELLNGLVYGEEGKQYEKVGDDRVKLL 372 Query: 81 PAAANYTGFSNWGWNSPLNRQDAAYPKEA--DDMFNSWQSSVYH---FPLETFVFDSAKV 135 T S W + L +P+E+ ++M S+ P+ F F + KV Sbjct: 373 KDYTPTTHLSAWNTGNNL----IIWPEESVTEEMVKERDKSIEEAKDSPILGFTFVNDKV 428 Query: 136 KNEVANIGNVMLRYAIPLEYGLIDDIEKGQADLIKQLKSAGIDKVQTEMQAQIDAFLAAQ 195 K E+ N+ VM RYA L G +D E+ L+ LK+AG DKVQ EMQ Q+D ++ +Q Sbjct: 429 KTEITNVATVMNRYAASLNTGTVDP-EETLPKLMDDLKTAGWDKVQKEMQTQLDEYIQSQ 487 Query: 196 K 196 K Sbjct: 488 K 488 >ref|NP_607659.1| conserved hypothetical protein [Streptococcus pyogenes MGAS8232] gb|AAL98158.1| conserved hypothetical protein [Streptococcus pyogenes MGAS8232] Length = 481 Score = 78.6 bits (192), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 57/169 (33%), Positives = 85/169 (50%), Gaps = 10/169 (5%) Query: 33 IHATSKNAERSLMLIDLLQNDKEIHDLTMYGIAGTNYIPEGDDKYKA--GPAAANYTGFS 90 + + SKN E+++ ++ LL +D E+ + +YG+ G + GD K K G + G Sbjct: 318 VSSVSKNKEKAVEVLSLLNSDPELLNGLVYGVEGKAWEKIGDKKIKLLDGYQPKMHMGAW 377 Query: 91 NWGWNSPLNRQDAAYPKEADDMFNSWQSSVY---HFPLETFVFDSAKVKNEVANIGNVML 147 N G N L Q++ DDM S+ P+ F D+ +K E++NI NVM Sbjct: 378 NTGNNKILYTQESV----TDDMIAKRDQSIKDAKESPILGFTVDTKVIKTELSNISNVMN 433 Query: 148 RYAIPLEYGLIDDIEKGQADLIKQLKSAGIDKVQTEMQAQIDAFLAAQK 196 RY + G +D E L+ LK AG DKVQ E+Q Q+D F+A K Sbjct: 434 RYKASINTGTVDPDE-ALPKLLADLKGAGWDKVQKEVQKQLDDFVAKDK 481 >ref|NP_267651.1| sugar ABC transporter substrate binding protein [Lactococcus lactis subsp. lactis] pir||G86811 sugar ABC transporter substrate binding protein ypcG [imported] - Lactococcus lactis subsp. lactis (strain IL1403) gb|AAK05593.1| sugar ABC transporter substrate binding protein [Lactococcus lactis subsp. lactis] Length = 483 Score = 78.2 bits (191), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 58/184 (31%), Positives = 92/184 (50%), Gaps = 17/184 (9%) Query: 15 LTPDKKKIAAIATQNGMSIHATSKNAERSLMLIDLLQNDKEIHDLTMYGIAGTNYIPEGD 74 +T D+ ++A N TSK+ E ++ + ++ +D E+ + +YG+ G + GD Sbjct: 308 ITTDQARMANFVVSN------TSKHKEEAVKALGIINSDAELLNGLVYGVEGQQWEKTGD 361 Query: 75 DKYKAGPA---AANYTGFSNWGWNSPLNRQDAAYPKEADDMFNSWQSSVYH---FPLETF 128 K K P+ + N G N+ L DA ++M S+ PL F Sbjct: 362 KKIKLLPSYSEGVKHMAAWNTGNNAILYTTDAV----TNEMITKRDQSIKDAKVSPLLGF 417 Query: 129 VFDSAKVKNEVANIGNVMLRYAIPLEYGLIDDIEKGQADLIKQLKSAGIDKVQTEMQAQI 188 FD +KVK+E++N+ NVM +Y L G +D ++ L +LK AG DKVQ EMQ+Q Sbjct: 418 TFDQSKVKSEISNLSNVMSQYLDQLNTGSVDPVQT-LPKLKAELKKAGYDKVQKEMQSQY 476 Query: 189 DAFL 192 D +L Sbjct: 477 DTYL 480 >ref|NP_561946.1| conserved hypothetical protein [Clostridium perfringens] dbj|BAB80736.1| conserved hypothetical protein [Clostridium perfringens str. 13] Length = 482 Score = 77.8 bits (190), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 89/166 (53%), Gaps = 4/166 (2%) Query: 32 SIHATSKNAERSLMLIDLLQNDKEIHDLTMYGIAGTNYIPEGDDKYKAGPAAANYTGFSN 91 +I ATSK+ E+++ LI+L+ D + +L M+GI GT+Y D++ K P ++ Sbjct: 320 AISATSKHPEKAMELINLVNTDSTLRNLLMFGIEGTHYEKVSDNQIKRDPNGP--YSVTS 377 Query: 92 WGWNSPLNRQDA-AYPKEADDMFNSWQSSVYHFPLETFVFDSAKVKNEVANIGNVMLRYA 150 W + + + + P + D F + P+ F F++ V +++ + NV+ + Sbjct: 378 WAYGNLFDTYVLDSDPADKWDAFEDFNKGAKTSPILGFKFNTEPVTTQISAVNNVLQEFE 437 Query: 151 IPLEYGLIDDIEKGQADLIKQLKSAGIDKVQTEMQAQIDAFLAAQK 196 L G +D + KG DL K+L ++G+D ++ EMQ Q+D + A+ K Sbjct: 438 RTLYSGSVDPV-KGLDDLNKKLAASGLDDIKAEMQKQLDEWKASNK 482 >ref|NP_665093.1| putative sugar ABC transporter substrate binding protein [Streptococcus pyogenes MGAS315] ref|NP_801834.1| conserved hypothetical protein [Streptococcus pyogenes SSI-1] gb|AAM79896.1| putative sugar ABC transporter substrate binding protein [Streptococcus pyogenes MGAS315] dbj|BAC63667.1| conserved hypothetical protein [Streptococcus pyogenes SSI-1] Length = 481 Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 57/169 (33%), Positives = 84/169 (49%), Gaps = 10/169 (5%) Query: 33 IHATSKNAERSLMLIDLLQNDKEIHDLTMYGIAGTNYIPEGDDKYKA--GPAAANYTGFS 90 + + SKN E+++ + LL +D E+ + +YG+ G + GD K K G + G Sbjct: 318 VSSVSKNKEKAVEALSLLNSDPELLNGLVYGVEGKAWEKIGDKKIKLLDGYQPKMHMGAW 377 Query: 91 NWGWNSPLNRQDAAYPKEADDMFNSWQSSVY---HFPLETFVFDSAKVKNEVANIGNVML 147 N G N L Q++ DDM S+ P+ F D+ +K E++NI NVM Sbjct: 378 NTGNNKILYTQESV----TDDMIAKRDQSIKDAKESPILGFTVDTKVIKTELSNISNVMN 433 Query: 148 RYAIPLEYGLIDDIEKGQADLIKQLKSAGIDKVQTEMQAQIDAFLAAQK 196 RY + G +D E L+ LK AG DKVQ E+Q Q+D F+A K Sbjct: 434 RYKASINTGTVDPDE-ALPKLLADLKGAGWDKVQKEVQKQLDDFVAKDK 481 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.315 0.131 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 292,770,678 Number of extensions: 11892862 Number of successful extensions: 22193 Number of sequences better than 1.0e-05: 17 Number of HSP's gapped: 22163 Number of HSP's successfully gapped: 17 Length of query: 197 Length of database: 757,237,578 Length adjustment: 119 Effective length of query: 78 Effective length of database: 434,140,797 Effective search space: 33862982166 Effective search space used: 33862982166 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 122 (51.6 bits)