BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0341.0012.p
         (219 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_217546.1| hypothetical protein Rv3030 [Mycobacterium tube...    55   1e-06
ref|NP_711783.1| S-adenosylmethionine-dependent methyltransferas...    55   1e-06

>ref|NP_217546.1| hypothetical protein Rv3030 [Mycobacterium tuberculosis H37Rv]
 ref|NP_337630.1| methyltransferase, putative [Mycobacterium tuberculosis CDC1551]
 ref|NP_856701.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis subsp. bovis
           AF2122/97]
 pir||A70859 hypothetical protein Rv3030 - Mycobacterium tuberculosis  (strain
           H37RV)
 emb|CAA16115.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium tuberculosis H37Rv]
 gb|AAK47444.1| methyltransferase, putative [Mycobacterium tuberculosis CDC1551]
 emb|CAD96743.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis subsp. bovis
           AF2122/97]
          Length = 274

 Score = 55.1 bits (131), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/149 (33%), Positives = 74/149 (49%), Gaps = 26/149 (17%)

Query: 19  DKLIYDLP-ESWWSRPYE--YEWCTNFVSSHDVVLDAACGISHPLKFYLAGYSAEVHACD 75
           ++ I DL  E++W R ++  Y+      ++ DV L+A CG          GY A++ AC 
Sbjct: 33  ERTIPDLDIENYWFRRHQVVYQRLAPRCTARDV-LEAGCG---------EGYGADLIAC- 81

Query: 76  IDARILSRDAIIQEIASDIGEEAARLVEARRTTRLHLAQANLTALPYENESFDTIFCISV 135
                ++R    Q IA D  E A   V +R   R+ + QANL  LP  + S D +    V
Sbjct: 82  -----VAR----QVIAVDYDETAVAHVRSR-YPRVEVMQANLAELPLPDASVDVVVNFQV 131

Query: 136 LEHLSLEDSVRAVKEFHRTLNGEGLLVLT 164
           +EH  L D  R V+E  R L G GLL+++
Sbjct: 132 IEH--LWDQARFVRECARVLRGSGLLMVS 158


>ref|NP_711783.1| S-adenosylmethionine-dependent methyltransferase [Leptospira
           interrogans serovar lai str. 56601]
 gb|AAN48801.1| S-adenosylmethionine-dependent methyltransferase [Leptospira
           interrogans serovar lai str. 56601]
 gb|AAS70752.1| methyltransferase [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
          Length = 244

 Score = 55.1 bits (131), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 60/125 (48%), Gaps = 20/125 (16%)

Query: 40  TNFVSSHDVVLDAACGISHPLKFYLAGYSAEVHACDIDARILSRDAIIQEIASDIGEEAA 99
           T +++  D + DA CG    L+  L  Y                   IQ    D   EA 
Sbjct: 31  TPYLADSDKIFDAGCGTGGMLQ-VLEKYFPR----------------IQLYGLDYSFEAC 73

Query: 100 RLVEARRTTRLHLAQANLTALPYENESFDTIFCISVLEHLSLEDSVRAVKEFHRTLNGEG 159
           +L  +RR T   + Q ++ ++P++NE FD +  + VLEH S++ S+ A+ EF+R L   G
Sbjct: 74  KL--SRRKTNATIDQGSIMSIPFKNEFFDVLLSLDVLEHKSVDPSI-ALNEFNRCLKKGG 130

Query: 160 LLVLT 164
            L+L 
Sbjct: 131 YLLLN 135


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.323    0.137    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 308,815,184
Number of extensions: 11484689
Number of successful extensions: 26204
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 26257
Number of HSP's successfully gapped: 3
Length of query: 219
Length of database: 757,237,578
Length adjustment: 121
Effective length of query: 98
Effective length of database: 428,710,599
Effective search space: 42013638702
Effective search space used: 42013638702
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 123 (52.0 bits)