BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0340.0035.p (180 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00183615.1| hypothetical protein Exigu093901 [Exiguobacte... 273 1e-72 ref|NP_630351.1| putative reductase [Streptomyces coelicolor A3(... 184 6e-46 ref|NP_600237.1| hypothetical protein NCgl0971 [Corynebacterium ... 183 2e-45 ref|NP_739340.1| conserved hypothetical protein [Corynebacterium... 164 7e-40 gb|AAP69587.1| putative reductase [Streptomyces griseoflavus] 158 4e-38 >ref|ZP_00183615.1| hypothetical protein Exigu093901 [Exiguobacterium sp. 255-15] Length = 180 Score = 273 bits (699), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 133/180 (73%), Positives = 150/180 (83%), Gaps = 1/180 (0%) Query: 1 MTTLNIGIILGSTRQGRVSPQVGEWVKSIADARGDAHYEIVDIADYKLPLLGESE-DYAP 59 MT LNIGIILGSTR+GR+SPQVG WVK +AD RGDAHY I+DIADYKLPLLGE + D + Sbjct: 1 MTKLNIGIILGSTREGRLSPQVGNWVKELADKRGDAHYTIIDIADYKLPLLGEKDGDASG 60 Query: 60 AQAWAAKLATLDGFVFIVQEYNHSITGVLKNALDSAREEWNNKAAGIVSYGSAGGARAAE 119 A AW+ +A DGFVFI QEYNHSI+ LKNALD R EWNNKAAGIVSYGS GGARAAE Sbjct: 61 AAAWSEAIAVQDGFVFITQEYNHSISASLKNALDYLRVEWNNKAAGIVSYGSVGGARAAE 120 Query: 120 HLRGILGELLVADVRVHPLLSLFTDFENGSVFKPAALHTPNVNAMLDQVLAWSGALKSLR 179 HLRGILGELL+ADVRVHP LSLFTDFENG+V K A + +VN MLDQV+ W+GALK++R Sbjct: 121 HLRGILGELLIADVRVHPALSLFTDFENGAVLKAAPVQADSVNQMLDQVIPWAGALKTIR 180 >ref|NP_630351.1| putative reductase [Streptomyces coelicolor A3(2)] emb|CAB60170.1| putative reductase [Streptomyces coelicolor A3(2)] Length = 185 Score = 184 bits (468), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 96/183 (52%), Positives = 115/183 (62%), Gaps = 7/183 (3%) Query: 5 NIGIILGSTRQGRVSPQVGEWVKSIADARGDAHYEIVDIADYKLPLLGESEDYAPAQ--- 61 + I++GST RV V WV +A RGDA +E+VD+ DY LP L E A Q Sbjct: 3 EVAIVIGSTGPRRVGEAVARWVHELAAKRGDAEFELVDLKDYDLPHLDEMMPAAMGQYSQ 62 Query: 62 ----AWAAKLATLDGFVFIVQEYNHSITGVLKNALDSAREEWNNKAAGIVSYGSAGGARA 117 AWA K+A D FVF+ EYNHS TG LKNA+D EW+NKAAG VSYGS GG RA Sbjct: 63 PHTRAWAEKVAGFDAFVFVTPEYNHSTTGALKNAIDFLHAEWHNKAAGFVSYGSNGGVRA 122 Query: 118 AEHLRGILGELLVADVRVHPLLSLFTDFENGSVFKPAALHTPNVNAMLDQVLAWSGALKS 177 EHLR +LGEL VADV+ LS+FTDFE+ + FKP H +N ML QV+AW AL Sbjct: 123 VEHLRLVLGELQVADVQAQVALSVFTDFEHFTAFKPGEHHEATLNTMLAQVVAWGEALAP 182 Query: 178 LRS 180 LR+ Sbjct: 183 LRT 185 >ref|NP_600237.1| hypothetical protein NCgl0971 [Corynebacterium glutamicum ATCC 13032] dbj|BAB98407.1| Predicted flavoprotein [Corynebacterium glutamicum ATCC 13032] emb|CAF19716.1| NADPH-dependent FMN reductase [Corynebacterium glutamicum ATCC 13032] Length = 188 Score = 183 bits (464), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 97/181 (53%), Positives = 121/181 (66%), Gaps = 8/181 (4%) Query: 6 IGIILGSTRQGRVSPQVGEWVKSIADARGDAHYEIVDIADYKLPLLGESE-----DYAP- 59 I II GSTR GRV+ V WV A R DA YE+VDIAD+ P+L E+ YA Sbjct: 4 IAIITGSTRPGRVNIDVANWVLERAQERNDAQYELVDIADFNFPVLDEAMPAGYGQYANE 63 Query: 60 -AQAWAAKLATLDGFVFIVQEYNHSITGVLKNALDSAREEWNNKAAGIVSYGSAGGARAA 118 +AWAAK+A DGF+F+ EYNHS+ L NAL EWNNKAAGIVSYGSA G RAA Sbjct: 64 HTKAWAAKIAEFDGFIFVTGEYNHSVPAALTNALSYLSAEWNNKAAGIVSYGSAMGVRAA 123 Query: 119 EHLRGILGELLVADVRVHPLLSLFTDFENGSVFKPAALHTPNVNAMLDQVLAWSGALKSL 178 EHLRGIL EL +A V+ LLS+FTDFE + FKP+ +V+AML+Q++ W+ A+ ++ Sbjct: 124 EHLRGILSELQIAHVQKTGLLSIFTDFEYPN-FKPSEQGISSVDAMLEQLVVWTKAMSTI 182 Query: 179 R 179 R Sbjct: 183 R 183 >ref|NP_739340.1| conserved hypothetical protein [Corynebacterium efficiens YS-314] dbj|BAC19540.1| conserved hypothetical protein [Corynebacterium efficiens YS-314] Length = 185 Score = 164 bits (416), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 89/183 (48%), Positives = 111/183 (60%), Gaps = 11/183 (6%) Query: 6 IGIILGSTRQGRVSPQVGEWVKSIADARGDAHYEIVDIADYKLPLLGE---------SED 56 I I++GSTR R + V EWV A A YE+VDIAD+ LPLL E S+D Sbjct: 4 IAIVVGSTRPNRNAASVAEWVFDNAPKDSGAEYELVDIADFNLPLLDEPMPPAMGQYSKD 63 Query: 57 YAPAQAWAAKLATLDGFVFIVQEYNHSITGVLKNALDSAREEWNNKAAGIVSYGSAGGAR 116 + +AWA K+A+ DGF+F+ EYNHS+ LKNA+D EWNNKA G VSYGSAGG R Sbjct: 64 HT--KAWAEKVASFDGFIFVTPEYNHSVPAALKNAVDFLYAEWNNKAIGFVSYGSAGGTR 121 Query: 117 AAEHLRGILGELLVADVRVHPLLSLFTDFENGSVFKPAALHTPNVNAMLDQVLAWSGALK 176 A E R I EL +ADVR L+ DF + S F+P+ T + + QV AWS ALK Sbjct: 122 AVEAWRLIAAELQMADVRAQVFLTFGNDFADMSTFQPSEGSTGALQDLFSQVTAWSEALK 181 Query: 177 SLR 179 +LR Sbjct: 182 TLR 184 >gb|AAP69587.1| putative reductase [Streptomyces griseoflavus] Length = 213 Score = 158 bits (400), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 92/203 (45%), Positives = 115/203 (56%), Gaps = 30/203 (14%) Query: 4 LNIGIILGSTRQGRVSPQVGEWVKSIADAR------GDAHYEIVDIADYKLPLLGESEDY 57 + I +ILGSTR GR V +WV +A AR G+A +E+VD+A+Y LPLL E Sbjct: 2 IRIAVILGSTRPGRRGAVVAQWVAEVA-ARHPAAVMGEAEFELVDLAEYGLPLLDEP--- 57 Query: 58 APA----------QAWAAKLATLDGFVFIVQEYNHSITGVLKNALDSAREEWNNKAAGIV 107 PA + WAA + + DGFVF+ EYNHS+ LKNA+D EW +KAAG V Sbjct: 58 VPAMFGQYQKEETRRWAAAIGSFDGFVFVTPEYNHSVPAALKNAIDHLFAEWTDKAAGFV 117 Query: 108 SYGSAGGARAAEHLRGILGELLVADVRVHPLLSLFTDFENGSV----------FKPAALH 157 SYG GG RA EHLR L E+ VA VR +LS+F DF+ F P Sbjct: 118 SYGVHGGTRAVEHLRLALAEVKVAGVRSQVVLSVFNDFDYTGCDMTDPTAMGRFTPGPQQ 177 Query: 158 TPNVNAMLDQVLAWSGALKSLRS 180 VN MLD+V+AWS ALK LR+ Sbjct: 178 EQTVNTMLDEVVAWSTALKPLRT 200 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.317 0.133 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 272,123,457 Number of extensions: 10576430 Number of successful extensions: 23723 Number of sequences better than 1.0e-05: 66 Number of HSP's gapped: 23708 Number of HSP's successfully gapped: 66 Length of query: 180 Length of database: 757,237,578 Length adjustment: 118 Effective length of query: 62 Effective length of database: 436,855,896 Effective search space: 27085065552 Effective search space used: 27085065552 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 122 (51.6 bits)