BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0340.0034.p
         (129 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EAD91288.1| unknown [environmental sequence]                        91   9e-18
gb|EAB06966.1| unknown [environmental sequence]                        90   1e-17
gb|EAD78564.1| unknown [environmental sequence] >gi|43535050|gb|...    87   9e-17
gb|EAI50300.1| unknown [environmental sequence]                        86   3e-16
sp|O87866|QACG_STASP QUATERNARY AMMONIUM COMPOUND-RESISTANCE PRO...    84   7e-16

>gb|EAD91288.1| unknown [environmental sequence]
          Length = 99

 Score = 90.9 bits (224), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 43/83 (51%), Positives = 58/83 (69%)

Query: 1  MAYLLLAVSIASELLGTSMLKASQGFTRLVPSIVTVVAFVCSFYFLSISLKSIPLNTAYA 60
          MAY  L ++I SE+L TSMLKAS GFT+L+PSIVT + +  SFYFLS+ LK IP+  +YA
Sbjct: 1  MAYAYLLIAILSEVLATSMLKASDGFTKLIPSIVTFIGYAVSFYFLSMVLKYIPIGISYA 60

Query: 61 IWSGLGXXXXXXXXXXXWKEKIN 83
          IWSGLG           +K++++
Sbjct: 61 IWSGLGIVLISIVGLLVFKQELD 83


>gb|EAB06966.1| unknown [environmental sequence]
          Length = 109

 Score = 90.1 bits (222), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 43/83 (51%), Positives = 58/83 (69%)

Query: 1  MAYLLLAVSIASELLGTSMLKASQGFTRLVPSIVTVVAFVCSFYFLSISLKSIPLNTAYA 60
          MAY  L ++I SE+L TSMLKAS GFT+L+PSIVT + +  SFYFLS+ LK IP+  +YA
Sbjct: 1  MAYAYLLIAILSEVLATSMLKASHGFTKLIPSIVTFIGYSVSFYFLSMVLKYIPIGISYA 60

Query: 61 IWSGLGXXXXXXXXXXXWKEKIN 83
          IWSGLG           +K++++
Sbjct: 61 IWSGLGIVLISIVGLLVFKQELD 83


>gb|EAD78564.1| unknown [environmental sequence]
 gb|EAE22200.1| unknown [environmental sequence]
          Length = 109

 Score = 87.4 bits (215), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 42/83 (50%), Positives = 57/83 (68%)

Query: 1  MAYLLLAVSIASELLGTSMLKASQGFTRLVPSIVTVVAFVCSFYFLSISLKSIPLNTAYA 60
          MAY  L ++I SE+L TSMLKAS GFT+L+PS VT + +  SFYFLS+ LK IP+  +YA
Sbjct: 1  MAYAYLLIAILSEVLATSMLKASDGFTKLIPSTVTFIGYSVSFYFLSMVLKYIPIGISYA 60

Query: 61 IWSGLGXXXXXXXXXXXWKEKIN 83
          IWSGLG           +K++++
Sbjct: 61 IWSGLGIVLISIVGLLVFKQELD 83


>gb|EAI50300.1| unknown [environmental sequence]
          Length = 109

 Score = 85.9 bits (211), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 39/83 (46%), Positives = 57/83 (68%)

Query: 1  MAYLLLAVSIASELLGTSMLKASQGFTRLVPSIVTVVAFVCSFYFLSISLKSIPLNTAYA 60
          MAY  LA++I SE+LGTSMLKAS GFT+ +PS++ +  +  SFYFLS+ LK IP+  +YA
Sbjct: 1  MAYYYLAIAILSEVLGTSMLKASNGFTKAIPSVICLFGYSISFYFLSLVLKVIPMGLSYA 60

Query: 61 IWSGLGXXXXXXXXXXXWKEKIN 83
          IWSG G           ++++++
Sbjct: 61 IWSGFGIVLISIVGLVFYRQQLD 83


>sp|O87866|QACG_STASP QUATERNARY AMMONIUM COMPOUND-RESISTANCE PROTEIN QACG (QUARTERNARY
          AMMONIUM DETERMINANT G)
 emb|CAA76542.1| quaternary ammonium compound-resistance protein [Staphylococcus
          sp.]
          Length = 107

 Score = 84.3 bits (207), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 39/83 (46%), Positives = 57/83 (68%)

Query: 1  MAYLLLAVSIASELLGTSMLKASQGFTRLVPSIVTVVAFVCSFYFLSISLKSIPLNTAYA 60
          M YL L +SIA+E++GTS LK S+GFT+L P++ T+++F   FYFLS+++K +PLN  YA
Sbjct: 1  MHYLYLFISIATEIIGTSFLKTSEGFTKLWPTLGTLLSFGICFYFLSLTIKFLPLNITYA 60

Query: 61 IWSGLGXXXXXXXXXXXWKEKIN 83
           W+GLG           +KE +N
Sbjct: 61 TWAGLGLVLTTIISVIVFKENVN 83


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.316    0.126    0.352 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 109,465,780
Number of extensions: 2626008
Number of successful extensions: 6761
Number of sequences better than 1.0e-05: 404
Number of HSP's gapped: 6763
Number of HSP's successfully gapped: 404
Length of query: 129
Length of database: 757,237,578
Length adjustment: 92
Effective length of query: 37
Effective length of database: 507,448,470
Effective search space: 18775593390
Effective search space used: 18775593390
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 120 (50.8 bits)