BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0340.0033.p (185 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_691916.1| transcriptional regulator [Oceanobacillus iheye... 147 1e-34 ref|ZP_00188041.1| hypothetical protein Rxyl084201 [Rubrobacter ... 143 2e-33 ref|NP_830845.1| Transcriptional regulator, TetR family [Bacillu... 135 4e-31 ref|NP_763773.1| transcriptional regulator [Staphylococcus epide... 127 1e-28 ref|NP_442375.1| unknown protein [Synechocystis sp. PCC 6803] >g... 116 2e-25 >ref|NP_691916.1| transcriptional regulator [Oceanobacillus iheyensis HTE831] dbj|BAC12951.1| transcriptional regulator [Oceanobacillus iheyensis HTE831] Length = 191 Score = 147 bits (371), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 73/170 (42%), Positives = 107/170 (62%) Query: 8 KIPKRMLIILAAIEVMRELGGEQLTLELVAKRAGVSKGGLLYHFPGKEALVNGVVEALTN 67 K +++ I+ AA ++ E G LTLE VAK AG+SKGGLLYHFP KEALV G+VE L Sbjct: 3 KQSRKITILNAASGIVSEKGIFNLTLEAVAKEAGISKGGLLYHFPSKEALVKGMVEHLAQ 62 Query: 68 SFEADLEKRIVADPISSGRWSRAYIESTFDEAGVGNDVGTVLASALFLNPESLNGIRHAY 127 +++ + + DP+ G+W+R+++ TF++ D+ L +A +NP+ + + AY Sbjct: 63 NYQNKISDNVERDPLERGKWTRSFLNVTFNQGYPNKDMHAGLLAAKAVNPKLMAPLHDAY 122 Query: 128 AEWQRNIENDGLDPVQTTLARLAADGLWFAEMFGLAPPGKELKQRVLEAL 177 +WQ NIENDGLDP+ T+ RLAADG+W AE+ E K+ V + L Sbjct: 123 EKWQGNIENDGLDPIDATIIRLAADGIWLAELLEHYNIDNEKKKEVYKRL 172 >ref|ZP_00188041.1| hypothetical protein Rxyl084201 [Rubrobacter xylanophilus DSM 9941] Length = 189 Score = 143 bits (360), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 87/177 (49%), Positives = 112/177 (63%), Gaps = 5/177 (2%) Query: 12 RMLIILAAIEVMRELGGEQLTLELVAKRAGVSKGGLLYHFPGKEALVNGVVEALTNSFEA 71 R ++LAA + G +LTLE VA AGVSKGGLLYHF GKE L+ +V FE Sbjct: 8 RRRLLLAAERLAGREGVARLTLEAVAAEAGVSKGGLLYHFSGKEELIGAMVMRWVEDFER 67 Query: 72 DLEKRIVADPISSGRWSRAYIESTFD-EAGVGNDVG---TVLASALFLNPESLNGIRHAY 127 D+E R+ + +GRW RAY+ +TF+ EAG G G +VLA+A N E L +R Y Sbjct: 68 DVESRLAREGSRAGRWVRAYVGATFEPEAGSGPAAGEPVSVLAAAA-TNRELLGELRRCY 126 Query: 128 AEWQRNIENDGLDPVQTTLARLAADGLWFAEMFGLAPPGKELKQRVLEALLQLTKEG 184 +WQ +E+DGLDP TL RLAADGLWF+E+FGLAPP L++RV +L+L G Sbjct: 127 RKWQERMEDDGLDPALATLLRLAADGLWFSELFGLAPPSGRLRERVHRRMLELASGG 183 >ref|NP_830845.1| Transcriptional regulator, TetR family [Bacillus cereus ATCC 14579] gb|AAP08046.1| Transcriptional regulator, TetR family [Bacillus cereus ATCC 14579] Length = 178 Score = 135 bits (340), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 65/168 (38%), Positives = 105/168 (62%) Query: 12 RMLIILAAIEVMRELGGEQLTLELVAKRAGVSKGGLLYHFPGKEALVNGVVEALTNSFEA 71 R I+ AA ++++ G +LTLE VAK AGVSKGGLLYHF KEAL+ G++ +E Sbjct: 7 RQKILAAASQIVQCKGVAKLTLEAVAKEAGVSKGGLLYHFSNKEALIEGMIVRGVEDYEG 66 Query: 72 DLEKRIVADPISSGRWSRAYIESTFDEAGVGNDVGTVLASALFLNPESLNGIRHAYAEWQ 131 + ++ D GRW R+++E + ++ + + +A L PE L ++ ++ + Q Sbjct: 67 AIYNKVAEDSERKGRWVRSFVEERLNNERRTEELSSSMMAAFMLKPELLEPLQQSFQQLQ 126 Query: 132 RNIENDGLDPVQTTLARLAADGLWFAEMFGLAPPGKELKQRVLEALLQ 179 +NIEND +D V T+ RLAADGLW++E G+ EL+++V++AL++ Sbjct: 127 KNIENDEIDAVCATIIRLAADGLWYSEYLGVGRLSPELREKVIQALIR 174 >ref|NP_763773.1| transcriptional regulator [Staphylococcus epidermidis ATCC 12228] gb|AAO03815.1| transcriptional regulator [Staphylococcus epidermidis ATCC 12228] Length = 179 Score = 127 bits (320), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 65/176 (36%), Positives = 107/176 (60%), Gaps = 1/176 (0%) Query: 8 KIPKRMLIILAAIEVMRELGGEQLTLELVAKRAGVSKGGLLYHFPGKEALVNGVVEALTN 67 +I KR LI+ +A ++ E G + LTL+ VA+RAG+SKGGL YHF K+ L+ +V N Sbjct: 3 RISKRQLILESAAAIINEKGADYLTLDAVAQRAGISKGGLFYHFKSKDELIKELVNYANN 62 Query: 68 SFEADLEKRIVADPISSGRWSRAYIESTFDEAGVGNDVGTVLASALFLNPESLNGIRHAY 127 + ++ + I + G+W A+IE+T + + + +A N L+ ++ +Y Sbjct: 63 LYRDNVNQHIGNEKNKKGQWLNAFIEATRAHRTDNAPITSGMLAAQGTNRSLLSPLKTSY 122 Query: 128 AEWQRNIENDGLDPVQTTLARLAADGLWFAEMFGLAPPGKELKQRVLEAL-LQLTK 182 EWQ I +DGLD V T+ RLA DGLW +E+FG++ +E++++V+E L +Q+ K Sbjct: 123 QEWQYQITHDGLDEVDATIIRLAVDGLWLSEIFGISAIDEEMREKVIERLKMQIEK 178 >ref|NP_442375.1| unknown protein [Synechocystis sp. PCC 6803] dbj|BAA10445.1| ORF_ID:slr0895~unknown protein [Synechocystis sp. PCC 6803] Length = 187 Score = 116 bits (291), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 66/170 (38%), Positives = 96/170 (56%), Gaps = 2/170 (1%) Query: 15 IILAAIEVMRELGGEQLTLELVAKRAGVSKGGLLYHFPGKEALVNGVVEALTNSFEADLE 74 ++ AA +V+ G + LTL+ VA AGVSKGGLL++FP KEAL+ G+V+ + F L Sbjct: 17 LLTAANQVIVSQGVDALTLDAVASEAGVSKGGLLHYFPTKEALIAGMVQQALDRFVETLH 76 Query: 75 KRIVADPI--SSGRWSRAYIESTFDEAGVGNDVGTVLASALFLNPESLNGIRHAYAEWQR 132 + + DP + G W RAYI ++ + ++ L +A F NPE L +RH + E Sbjct: 77 QELANDPAPDTPGHWVRAYIRASALDDQENYELHFNLLAANFTNPELLAPMRHFWQECHG 136 Query: 133 NIENDGLDPVQTTLARLAADGLWFAEMFGLAPPGKELKQRVLEALLQLTK 182 I GLDP T+ RLA DGLW + G AP L+ +V+ L+L + Sbjct: 137 QIMASGLDPAVATVIRLAMDGLWLTHLHGFAPLEDPLRSQVIATALKLAQ 186 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.316 0.135 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 267,492,165 Number of extensions: 10223842 Number of successful extensions: 26803 Number of sequences better than 1.0e-05: 38 Number of HSP's gapped: 26806 Number of HSP's successfully gapped: 38 Length of query: 185 Length of database: 757,237,578 Length adjustment: 118 Effective length of query: 67 Effective length of database: 436,855,896 Effective search space: 29269345032 Effective search space used: 29269345032 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 122 (51.6 bits)