BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0340.0031.p (161 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_349537.1| Predicted acetyltransferase [Clostridium acetob... 178 4e-44 ref|NP_739284.1| conserved hypothetical protein [Corynebacterium... 138 4e-32 ref|ZP_00063715.1| COG0454: Histone acetyltransferase HPA2 and r... 137 8e-32 ref|NP_694018.1| hypothetical protein OB3096 [Oceanobacillus ihe... 135 4e-31 gb|EAD53494.1| unknown [environmental sequence] 117 1e-25 >ref|NP_349537.1| Predicted acetyltransferase [Clostridium acetobutylicum] pir||B97261 probable acetyltransferase [imported] - Clostridium acetobutylicum gb|AAK80877.1| Predicted acetyltransferase [Clostridium acetobutylicum] Length = 156 Score = 178 bits (451), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 83/159 (52%), Positives = 105/159 (66%), Gaps = 3/159 (1%) Query: 1 MNIRLIEYKDNSSIEHIIRVCLIEFGGNREGLAWADASMHDLYHYYKEPNRAYWIVEEDG 60 M IR IE KDN +E +IR CLIEFG ++ G AW D + Y Y++ YW+VEE+G Sbjct: 1 MLIREIEKKDNEQVETLIRTCLIEFGADKPGCAWTDPDLGRFYEIYQDKKSKYWVVEEEG 60 Query: 61 KVLGGCGIAPFAESDQVCELQKMYLSTSIRGSGIAVELLQTALDFAALHYKQCYLETLQS 120 K++ GCGI P ++ VCELQKMY RG+GIA +LL ALDFA +Y +CYLET + Sbjct: 61 KIIAGCGIGPLNGAENVCELQKMYSYKEARGTGIAKDLLGLALDFAKKYYDKCYLETFSN 120 Query: 121 MHAANRFYRKNGFTLLXXXXSPLGGSEHFACDAWYIKSL 159 M AAN+FY KNGF L PL ++H+ACD WYIK L Sbjct: 121 MTAANKFYVKNGFKKL---EKPLIETDHYACDVWYIKEL 156 >ref|NP_739284.1| conserved hypothetical protein [Corynebacterium efficiens YS-314] dbj|BAC19484.1| conserved hypothetical protein [Corynebacterium efficiens YS-314] Length = 164 Score = 138 bits (348), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 75/164 (45%), Positives = 98/164 (59%), Gaps = 7/164 (4%) Query: 1 MNIRLIEYKDNSSIEHIIRVCLIEFGGNREGLAWADASMHDLYHYYKE-PNRAYWIVEED 59 M R IE +DN+++ IIR L G G A+ D + +L +Y P+ YW+VE + Sbjct: 1 MITRPIEQRDNAAVREIIRESLESHGLAIPGSAYFDPQLGELAQFYDSLPHAGYWVVEVE 60 Query: 60 GKVLGGCGIAPFAESD---QVCELQKMYLSTSIRGSGIAVELLQTALDFAALHYKQCYLE 116 G+V+GG GIAPF + +CELQK+YL ++G G++ L+ AL FAA HY QCYLE Sbjct: 61 GRVMGGVGIAPFGIAPFGTAICELQKLYLRPEVQGRGLSRLLMDEALSFAACHYGQCYLE 120 Query: 117 TLQSMHAANRFYRKNGFTLLXXXXSPLGGSEHFACDAWYIKSLE 160 T S+ A Y K GF LL PL GSEH A DAWY+K LE Sbjct: 121 TTHSLRTACILYEKYGFRLL---PEPLPGSEHSAMDAWYLKDLE 161 >ref|ZP_00063715.1| COG0454: Histone acetyltransferase HPA2 and related acetyltransferases [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 165 Score = 137 bits (345), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 74/161 (45%), Positives = 96/161 (59%), Gaps = 4/161 (2%) Query: 1 MNIRLIEYKDNSSIEHIIRVCLIEFGGNREGLAWADASMHDLYHYYKE-PNRAYWIVEED 59 M IR I+ +DN ++ II+ L EG A+ D + L YY N YW+VE D Sbjct: 4 MIIRTIKKEDNLIVKKIIQESLESLNFAIEGTAYFDPQLGRLNEYYDNLDNAKYWVVELD 63 Query: 60 GKVLGGCGIAPFAESDQVCELQKMYLSTSIRGSGIAVELLQTALDFAALHYKQCYLETLQ 119 K++GG GIAPF +CELQK+YL +G GI+ +L++TAL FA+ HYK CYLET Sbjct: 64 NKIVGGIGIAPFDNEQGICELQKLYLIPEAQGLGISRKLMETALSFASTHYKSCYLETNH 123 Query: 120 SMHAANRFYRKNGFTLLXXXXSPLGGSEHFACDAWYIKSLE 160 + A Y K GF LL SP+ GS HFA +AWY+K LE Sbjct: 124 DLKVACILYEKFGFKLL---NSPISGSGHFAMNAWYLKDLE 161 >ref|NP_694018.1| hypothetical protein OB3096 [Oceanobacillus iheyensis HTE831] dbj|BAC15052.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831] Length = 157 Score = 135 bits (339), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 72/160 (45%), Positives = 94/160 (58%), Gaps = 4/160 (2%) Query: 1 MNIRLIEYKDNSSIEHIIRVCLIEFGGNREGLAWADASMHDLYHYYKE-PNRAYWIVEED 59 M IR IE KDN IE +I+ L +REG A+ D + L YY + +YWI E Sbjct: 1 MFIREIEEKDNRQIEKLIKESLESVSLDREGTAYYDPQLPRLSQYYSSIQDGSYWIAVEG 60 Query: 60 GKVLGGCGIAPFAESDQVCELQKMYLSTSIRGSGIAVELLQTALDFAALHYKQCYLETLQ 119 +V+GG GIAP+ + +CELQK Y+ +G GI +LL+TAL+FA Y QCYLET Sbjct: 61 EEVVGGIGIAPYVKEKGICELQKFYVHQDYQGKGIGRKLLRTALEFAERKYNQCYLETRH 120 Query: 120 SMHAANRFYRKNGFTLLXXXXSPLGGSEHFACDAWYIKSL 159 + AN+ Y +N FTLL SP+ GS+H D WYI L Sbjct: 121 ELKQANKLYEQNDFTLL---PSPIEGSDHSFMDRWYIVDL 157 >gb|EAD53494.1| unknown [environmental sequence] Length = 165 Score = 117 bits (292), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 60/161 (37%), Positives = 91/161 (56%), Gaps = 5/161 (3%) Query: 2 NIRLIEYKDNSSIEHIIRVCLIEFGGNREGLAWADASMHDLYHYYKEPNRAYWIVEEDGK 61 NIR+IE KDN + +I+ E G G A+AD +Y Y++P Y++VE++G Sbjct: 8 NIRVIEKKDNDQVCAVIKGVFYELGLPLVGTAYADKDTLSMYEAYQDPRSIYYVVEKEGS 67 Query: 62 VLGGCGIAPFAESDQ-VCELQKMYLSTSIRGSGIAVELLQTALDFAA-LHYKQCYLETLQ 119 + GGCGI + +++ +CELQK Y SIRG G+ LL+ LDFA + Y+ CYLE+ Sbjct: 68 IFGGCGIKQLSGTNENICELQKFYFHKSIRGKGLGKYLLKLCLDFAKEVKYEVCYLESTS 127 Query: 120 SMHAANRFYRKNGFTLLXXXXSPLGGSEHFACDAWYIKSLE 160 ++ ++ Y+ GF L P+G + H CD K L+ Sbjct: 128 ALKTSHHLYKIFGFENL---EGPMGNTSHHNCDVHMTKKLQ 165 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.322 0.137 0.431 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 241,855,588 Number of extensions: 8977478 Number of successful extensions: 17036 Number of sequences better than 1.0e-05: 51 Number of HSP's gapped: 17021 Number of HSP's successfully gapped: 51 Length of query: 161 Length of database: 757,237,578 Length adjustment: 116 Effective length of query: 45 Effective length of database: 442,286,094 Effective search space: 19902874230 Effective search space used: 19902874230 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 120 (50.8 bits)