BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0340.0021.p
         (91 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_00103824.1| COG1028: Dehydrogenases with different specif...    77   1e-13
ref|NP_691913.1| 3-oxoacyl-(acyl carrier protein) reductase [Oce...    74   1e-12
ref|NP_465699.1| similar to dehydrogenase [Listeria monocytogene...    66   3e-10
gb|EAG61367.1| unknown [environmental sequence]                        65   4e-10
ref|NP_471610.1| similar to dehydrogenase [Listeria innocua] >gi...    64   1e-09

>ref|ZP_00103824.1| COG1028: Dehydrogenases with different specificities (related to
          short-chain alcohol dehydrogenases) [Desulfitobacterium
          hafniense]
          Length = 252

 Score = 77.0 bits (188), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 38/53 (71%), Positives = 46/53 (86%)

Query: 18 MRLRDKVAVVTGAASGMGKAIAILYASEGAKVVVSDIKLEAANETVQEIQSAG 70
          MRL +KVA+VTGAASGMGK+IA+LYA EGAKVVVSD+ LE A++  +EI SAG
Sbjct: 1  MRLMNKVAIVTGAASGMGKSIALLYAKEGAKVVVSDLNLEGAHKVAEEITSAG 53


>ref|NP_691913.1| 3-oxoacyl-(acyl carrier protein) reductase [Oceanobacillus
          iheyensis HTE831]
 dbj|BAC12948.1| 3-oxoacyl-(acyl carrier protein) reductase [Oceanobacillus
          iheyensis HTE831]
          Length = 253

 Score = 73.6 bits (179), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 36/51 (70%), Positives = 43/51 (84%)

Query: 18 MRLRDKVAVVTGAASGMGKAIAILYASEGAKVVVSDIKLEAANETVQEIQS 68
          M+L+DKVA+VTGAASGMGKAIA LYASEGAKV+V+D+  E A   V+EI S
Sbjct: 1  MKLKDKVAIVTGAASGMGKAIATLYASEGAKVIVADLNEEGAQSVVEEITS 51


>ref|NP_465699.1| similar to dehydrogenase [Listeria monocytogenes EGD-e]
 pir||AG1346 dehydrogenase homolog lmo2175 [imported] - Listeria monocytogenes
          (strain EGD-e)
 emb|CAD00253.1| lmo2175 [Listeria monocytogenes]
          Length = 253

 Score = 65.9 bits (159), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 33/49 (67%), Positives = 42/49 (85%)

Query: 19 RLRDKVAVVTGAASGMGKAIAILYASEGAKVVVSDIKLEAANETVQEIQ 67
          +L  KVAVVTGAASGMG+ IAIL+A EGAKVVV+D+ LEAA +TV+ ++
Sbjct: 3  KLNGKVAVVTGAASGMGQQIAILFAKEGAKVVVADLNLEAAQKTVELVE 51


>gb|EAG61367.1| unknown [environmental sequence]
          Length = 231

 Score = 65.5 bits (158), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 33/53 (62%), Positives = 38/53 (71%)

Query: 18 MRLRDKVAVVTGAASGMGKAIAILYASEGAKVVVSDIKLEAANETVQEIQSAG 70
          MRL+DKV +VTGA SG G  IA LYASEGAKVV++DI   A     QEI+ AG
Sbjct: 1  MRLKDKVTLVTGAGSGFGAGIARLYASEGAKVVINDINDNAGQTVAQEIRQAG 53


>ref|NP_471610.1| similar to dehydrogenase [Listeria innocua]
 pir||AB1717 dehydrogenase homolog lin2278 [imported] - Listeria innocua
          (strain Clip11262)
 emb|CAC97506.1| lin2278 [Listeria innocua]
          Length = 253

 Score = 63.9 bits (154), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/50 (66%), Positives = 41/50 (82%)

Query: 19 RLRDKVAVVTGAASGMGKAIAILYASEGAKVVVSDIKLEAANETVQEIQS 68
          +L  KVAVVTGAASGMG+ IA+L+A EGAKVVV+D+ LEAA +TV  I+ 
Sbjct: 3  KLAGKVAVVTGAASGMGQQIAVLFAKEGAKVVVADLNLEAAQKTVALIED 52


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.316    0.131    0.344 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 102,305,995
Number of extensions: 2974298
Number of successful extensions: 20314
Number of sequences better than 1.0e-05: 262
Number of HSP's gapped: 20454
Number of HSP's successfully gapped: 262
Length of query: 91
Length of database: 757,237,578
Length adjustment: 59
Effective length of query: 32
Effective length of database: 597,046,737
Effective search space: 19105495584
Effective search space used: 19105495584
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 120 (50.8 bits)