BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0340.0020.p (170 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00103824.1| COG1028: Dehydrogenases with different specif... 266 1e-70 ref|NP_465699.1| similar to dehydrogenase [Listeria monocytogene... 241 5e-63 ref|NP_471610.1| similar to dehydrogenase [Listeria innocua] >gi... 241 6e-63 ref|NP_691913.1| 3-oxoacyl-(acyl carrier protein) reductase [Oce... 229 1e-59 ref|ZP_00070551.1| COG1028: Dehydrogenases with different specif... 144 8e-34 >ref|ZP_00103824.1| COG1028: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Desulfitobacterium hafniense] Length = 252 Score = 266 bits (681), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 124/170 (72%), Positives = 144/170 (84%) Query: 1 LDILVNNAGIMDNFEPAGDIADADWERIFAVNTTSVMRATRKALTVFLPKEKGVILNVAS 60 +DI VNNAGIMDNFEPA DI D +WERIFAVNTTSVMRATRK L +FL K GVI+NVAS Sbjct: 83 VDIFVNNAGIMDNFEPAADIEDKNWERIFAVNTTSVMRATRKVLPIFLEKSSGVIVNVAS 142 Query: 61 IGGLFGARAGAAYTASKHAVVGFTKNTGYMYAKSGIRCNAIAPGGVETNIGSSMTHINEF 120 GGL GARAGA YTASKHAV+GFTKNTG+MYA+ GIRCNAIAPG VETNIGS++T ++F Sbjct: 143 AGGLNGARAGATYTASKHAVIGFTKNTGFMYAQQGIRCNAIAPGAVETNIGSTITDPHKF 202 Query: 121 GMGRTQPGMAINPRMGQPGEVAQLALFLASDEAGFINGVVVTADGGWTAY 170 G R GMA NPRMG+P E+AQ+ALFLA++E+ F+NG V+ ADGGW+AY Sbjct: 203 GSARAYAGMATNPRMGKPEEIAQVALFLAAEESSFVNGAVIVADGGWSAY 252 >ref|NP_465699.1| similar to dehydrogenase [Listeria monocytogenes EGD-e] pir||AG1346 dehydrogenase homolog lmo2175 [imported] - Listeria monocytogenes (strain EGD-e) emb|CAD00253.1| lmo2175 [Listeria monocytogenes] Length = 253 Score = 241 bits (615), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 113/170 (66%), Positives = 137/170 (80%) Query: 1 LDILVNNAGIMDNFEPAGDIADADWERIFAVNTTSVMRATRKALTVFLPKEKGVILNVAS 60 LDILVNNAGIMDNF PAG++ D W+++FA+NTT VMRATR+AL +F K +GVI+N+AS Sbjct: 84 LDILVNNAGIMDNFVPAGELTDELWDKVFAINTTGVMRATREALHIFEEKGQGVIVNIAS 143 Query: 61 IGGLFGARAGAAYTASKHAVVGFTKNTGYMYAKSGIRCNAIAPGGVETNIGSSMTHINEF 120 GGLFG+RAGAAYTASKHAVVGFTKN G+ YA IRCNAIAPG V TNIG+++ +EF Sbjct: 144 AGGLFGSRAGAAYTASKHAVVGFTKNVGFQYANKNIRCNAIAPGAVNTNIGTTIYAPDEF 203 Query: 121 GMGRTQPGMAINPRMGQPGEVAQLALFLASDEAGFINGVVVTADGGWTAY 170 G R GM INPR G E+A++ALFLASD++ F+NG V+TAD GWTAY Sbjct: 204 GQERAMIGMGINPRAGDASEIAKVALFLASDDSSFVNGTVITADAGWTAY 253 >ref|NP_471610.1| similar to dehydrogenase [Listeria innocua] pir||AB1717 dehydrogenase homolog lin2278 [imported] - Listeria innocua (strain Clip11262) emb|CAC97506.1| lin2278 [Listeria innocua] Length = 253 Score = 241 bits (614), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 113/170 (66%), Positives = 136/170 (80%) Query: 1 LDILVNNAGIMDNFEPAGDIADADWERIFAVNTTSVMRATRKALTVFLPKEKGVILNVAS 60 LDILVNNAGIMDNF PAG++ D W+++FA+NTT VMRATRKAL +F K +GVI+N+AS Sbjct: 84 LDILVNNAGIMDNFVPAGELTDELWDKVFAINTTGVMRATRKALHIFEEKGQGVIVNIAS 143 Query: 61 IGGLFGARAGAAYTASKHAVVGFTKNTGYMYAKSGIRCNAIAPGGVETNIGSSMTHINEF 120 GGLFG+RAGAAYTASKHAVVGFTKN G+ YA IRCNAIAPG V TNIG+++ ++F Sbjct: 144 AGGLFGSRAGAAYTASKHAVVGFTKNVGFQYANKNIRCNAIAPGAVNTNIGTTIYAPDQF 203 Query: 121 GMGRTQPGMAINPRMGQPGEVAQLALFLASDEAGFINGVVVTADGGWTAY 170 G R GM NPR G E+A++ALFLASD+A F+NG V+TAD GWTAY Sbjct: 204 GQERAMIGMGTNPRAGDASEIAKVALFLASDDASFVNGTVITADAGWTAY 253 >ref|NP_691913.1| 3-oxoacyl-(acyl carrier protein) reductase [Oceanobacillus iheyensis HTE831] dbj|BAC12948.1| 3-oxoacyl-(acyl carrier protein) reductase [Oceanobacillus iheyensis HTE831] Length = 253 Score = 229 bits (585), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 119/169 (70%), Positives = 134/169 (79%) Query: 1 LDILVNNAGIMDNFEPAGDIADADWERIFAVNTTSVMRATRKALTVFLPKEKGVILNVAS 60 LDILVNNAGIMD FE GD+ D W+ IF +NT VMRA RKA+ +FL KE GVI+N AS Sbjct: 83 LDILVNNAGIMDGFEAVGDVEDDRWDLIFDINTKGVMRAMRKAIPIFLEKESGVIVNTAS 142 Query: 61 IGGLFGARAGAAYTASKHAVVGFTKNTGYMYAKSGIRCNAIAPGGVETNIGSSMTHINEF 120 GGL GA AGAAY ASKHAV+G TKNTGYMYA SGIRCNAIAPGGV TNI SS+ NEF Sbjct: 143 TGGLNGAHAGAAYGASKHAVIGLTKNTGYMYANSGIRCNAIAPGGVATNITSSLKGFNEF 202 Query: 121 GMGRTQPGMAINPRMGQPGEVAQLALFLASDEAGFINGVVVTADGGWTA 169 G GRT+ + PR+GQP E+AQ+ALFLASD+A F+NG VVTADGGWTA Sbjct: 203 GFGRTKAVQGVMPRVGQPEEIAQVALFLASDDASFVNGTVVTADGGWTA 251 >ref|ZP_00070551.1| COG1028: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Oenococcus oeni MCW] Length = 92 Score = 144 bits (363), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 68/92 (73%), Positives = 80/92 (86%) Query: 31 VNTTSVMRATRKALTVFLPKEKGVILNVASIGGLFGARAGAAYTASKHAVVGFTKNTGYM 90 +NT SVMR +R A+ +FLPK+ GVILN+AS+GG+ GARAGAAYTASKHAVVG TKNT YM Sbjct: 1 MNTVSVMRTSRIAVKLFLPKKHGVILNIASVGGIQGARAGAAYTASKHAVVGLTKNTAYM 60 Query: 91 YAKSGIRCNAIAPGGVETNIGSSMTHINEFGM 122 Y K GIRCNAIAPGG+ TNI SSMT+I++FGM Sbjct: 61 YEKEGIRCNAIAPGGINTNISSSMTNIDKFGM 92 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.319 0.135 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 251,004,470 Number of extensions: 9725581 Number of successful extensions: 40758 Number of sequences better than 1.0e-05: 5830 Number of HSP's gapped: 35804 Number of HSP's successfully gapped: 5846 Length of query: 170 Length of database: 757,237,578 Length adjustment: 117 Effective length of query: 53 Effective length of database: 439,570,995 Effective search space: 23297262735 Effective search space used: 23297262735 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 121 (51.2 bits)