BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0340.0018.p (200 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value sp|P37711|VANY_ENTFC D-alanyl-D-alanine carboxypeptidase (DD-pep... 246 2e-64 ref|NP_878018.1| D-alanyl-D-alanine carboxypeptidase VanY [Staph... 246 2e-64 emb|CAB61224.1| VayY protein [Bacillus circulans] 237 1e-61 gb|AAF36805.1| putative carboxypeptidase [Paenibacillus popilliae] 237 1e-61 ref|NP_242676.1| D-alanyl-D-alanine carboxypeptidase [Bacillus h... 234 1e-60 >sp|P37711|VANY_ENTFC D-alanyl-D-alanine carboxypeptidase (DD-peptidase) (DD-carboxypeptidase) pir||JC1427 vanY protein - Enterococcus faecium gb|AAA98147.1| D,D-carboxypeptidase gb|AAA65958.1| vanY [Enterococcus faecium] Length = 303 Score = 246 bits (628), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 114/192 (59%), Positives = 145/192 (75%) Query: 1 LLDRSIELSKRVTERFSELPAAAAKDGAENFRISSGYRDQEEQGRLYKEKGADYALPAGY 60 LLD +I +SK + ++FSE+ A K G +F I+SGYRD +EQ LY+E GA+YALPAGY Sbjct: 101 LLDSNIYMSKEIAQKFSEMVNDAVKGGVSHFIINSGYRDFDEQSVLYQEMGAEYALPAGY 160 Query: 61 SEHNTGLSLDIGSSLGEIKGSPEGKWLRANAWNYGFILRYPEDKTNITGIKYEAWHFRYV 120 SEHN+GLSLD+GSSL +++ +PEGKW+ NAW YGFILRYPEDKT +TGI+YE WH RYV Sbjct: 161 SEHNSGLSLDVGSSLTKMERAPEGKWIEENAWKYGFILRYPEDKTELTGIQYEPWHIRYV 220 Query: 121 GLPHSLVMKEKNMVLEEYLADLKQRKRQQITVADRKYLMLYVPASQLGSVHVPAGHPYTV 180 GLPHS +MKEKN VLEEY+ LK+ K ++V KY + Y P ++ ++HVP Y + Sbjct: 221 GLPHSAIMKEKNFVLEEYMDYLKEEKTISVSVNGEKYEIFYYPVTKNTTIHVPTNLRYEI 280 Query: 181 SGNNSDGVIVTV 192 SGNN DGVIVTV Sbjct: 281 SGNNIDGVIVTV 292 >ref|NP_878018.1| D-alanyl-D-alanine carboxypeptidase VanY [Staphylococcus aureus] gb|AAQ17162.1| D-alanyl-D-alanine carboxypeptidase VanY [Staphylococcus aureus] Length = 296 Score = 246 bits (628), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 114/192 (59%), Positives = 145/192 (75%) Query: 1 LLDRSIELSKRVTERFSELPAAAAKDGAENFRISSGYRDQEEQGRLYKEKGADYALPAGY 60 LLD +I +SK + ++FSE+ A K G +F I+SGYRD +EQ LY+E GA+YALPAGY Sbjct: 94 LLDSNIYMSKEIAQKFSEMVNDAVKGGVSHFIINSGYRDFDEQSVLYQEMGAEYALPAGY 153 Query: 61 SEHNTGLSLDIGSSLGEIKGSPEGKWLRANAWNYGFILRYPEDKTNITGIKYEAWHFRYV 120 SEHN+GLSLD+GSSL +++ +PEGKW+ NAW YGFILRYPEDKT +TGI+YE WH RYV Sbjct: 154 SEHNSGLSLDVGSSLTKMERAPEGKWIEENAWKYGFILRYPEDKTELTGIQYEPWHIRYV 213 Query: 121 GLPHSLVMKEKNMVLEEYLADLKQRKRQQITVADRKYLMLYVPASQLGSVHVPAGHPYTV 180 GLPHS +MKEKN VLEEY+ LK+ K ++V KY + Y P ++ ++HVP Y + Sbjct: 214 GLPHSAIMKEKNFVLEEYMDYLKEEKTISVSVNGEKYEIFYYPVTKNTTIHVPTNLRYEI 273 Query: 181 SGNNSDGVIVTV 192 SGNN DGVIVTV Sbjct: 274 SGNNIDGVIVTV 285 >emb|CAB61224.1| VayY protein [Bacillus circulans] Length = 297 Score = 237 bits (605), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 109/192 (56%), Positives = 144/192 (75%) Query: 1 LLDRSIELSKRVTERFSELPAAAAKDGAENFRISSGYRDQEEQGRLYKEKGADYALPAGY 60 LLD +I +SK + ++FSE+ A G +F I+SGYRD +EQ LY+E G YALPAGY Sbjct: 101 LLDTNIYMSKEIAQKFSEMINDAVNGGVSHFIINSGYRDFDEQSVLYQEMGDSYALPAGY 160 Query: 61 SEHNTGLSLDIGSSLGEIKGSPEGKWLRANAWNYGFILRYPEDKTNITGIKYEAWHFRYV 120 SEHN+GLSLD+GSSL +++ +PEGKW++ NAW YGFILRYPEDKT++TGI+YE WH RYV Sbjct: 161 SEHNSGLSLDVGSSLTKMERAPEGKWIKENAWKYGFILRYPEDKTDVTGIQYEPWHIRYV 220 Query: 121 GLPHSLVMKEKNMVLEEYLADLKQRKRQQITVADRKYLMLYVPASQLGSVHVPAGHPYTV 180 GL HS +MKEKN LEEY+ LK+ K ++V + KY + Y P ++ ++HVP+ + + Sbjct: 221 GLAHSAIMKEKNFALEEYMDYLKEEKIISVSVNEEKYEIFYYPVTKNTTIHVPSNLRWEI 280 Query: 181 SGNNSDGVIVTV 192 SGNN DGVIVTV Sbjct: 281 SGNNIDGVIVTV 292 >gb|AAF36805.1| putative carboxypeptidase [Paenibacillus popilliae] Length = 293 Score = 237 bits (604), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 113/194 (58%), Positives = 142/194 (73%), Gaps = 2/194 (1%) Query: 1 LLDRSIELSKRVTERFSELPAAAAKDGAENFRISSGYRDQEEQGRLYKEKGADYALPAGY 60 LLD I+LS+ + +FSE+ AAA +DG NF ISSGYRD +EQ RLY+E G+D+ALPAG+ Sbjct: 98 LLDNEIKLSEEIAGKFSEMIAAAEEDGVSNFLISSGYRDLDEQSRLYEEMGSDFALPAGH 157 Query: 61 SEHNTGLSLDIGSSLGEIKGSPEGKWLRANAWNYGFILRYPEDKTNITGIKYEAWHFRYV 120 SEHN GLSLD+GS+ ++ +PEGKW+ N W YGFILRYP DKT++TGI+YE WH RYV Sbjct: 158 SEHNLGLSLDVGSTQMKMDKAPEGKWIEKNCWEYGFILRYPLDKTDVTGIQYEPWHIRYV 217 Query: 121 GLPHSLVMKEKNMVLEEYLADLKQRKRQQITVADRKYLMLYVPASQLGS--VHVPAGHPY 178 GLPHS +M+E N+ LEEYL LK+ K + V +KY + Y P SQ + V VPA Y Sbjct: 218 GLPHSAIMQEMNLALEEYLDYLKEEKSISVRVDGKKYTISYDPISQNETIEVEVPADEQY 277 Query: 179 TVSGNNSDGVIVTV 192 +SGNN DGVIVT Sbjct: 278 EISGNNIDGVIVTT 291 >ref|NP_242676.1| D-alanyl-D-alanine carboxypeptidase [Bacillus halodurans] pir||B83876 D-alanyl-D-alanine carboxypeptidase BH1810 [imported] - Bacillus halodurans (strain C-125) dbj|BAB05529.1| D-alanyl-D-alanine carboxypeptidase [Bacillus halodurans] Length = 290 Score = 234 bits (596), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 108/192 (56%), Positives = 142/192 (73%) Query: 1 LLDRSIELSKRVTERFSELPAAAAKDGAENFRISSGYRDQEEQGRLYKEKGADYALPAGY 60 LLD I LS+ V RFSE+ AAA K+G +F +SSG+RD EEQ LY+E+GA YALPAG+ Sbjct: 97 LLDYDIYLSEDVARRFSEMVAAAQKEGVSHFLVSSGFRDFEEQRELYEERGAAYALPAGH 156 Query: 61 SEHNTGLSLDIGSSLGEIKGSPEGKWLRANAWNYGFILRYPEDKTNITGIKYEAWHFRYV 120 SEHN GL+LD+GS+ + + E +W++ NAW +GFILRYP+DK +ITGI+YE WH RYV Sbjct: 157 SEHNLGLALDVGSTQTSMYEAAEAEWIKENAWKHGFILRYPQDKVDITGIEYEPWHLRYV 216 Query: 121 GLPHSLVMKEKNMVLEEYLADLKQRKRQQITVADRKYLMLYVPASQLGSVHVPAGHPYTV 180 GLPHS +MKEKN VLEEYL L+++KR + V KY + Y P S+ ++H+P Y + Sbjct: 217 GLPHSAIMKEKNFVLEEYLEYLREKKRVSVEVEGEKYTVAYYPISENLTIHIPKNREYEI 276 Query: 181 SGNNSDGVIVTV 192 SGNN DGVI+T+ Sbjct: 277 SGNNVDGVIMTI 288 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.314 0.133 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 316,887,265 Number of extensions: 13792104 Number of successful extensions: 24450 Number of sequences better than 1.0e-05: 90 Number of HSP's gapped: 24369 Number of HSP's successfully gapped: 90 Length of query: 200 Length of database: 757,237,578 Length adjustment: 119 Effective length of query: 81 Effective length of database: 434,140,797 Effective search space: 35165404557 Effective search space used: 35165404557 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 123 (52.0 bits)