BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0340.0013.p
         (122 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_981214.1| conserved hypothetical protein [Bacillus cereus...    59   4e-08
ref|NP_658803.1| HesB-like, HesB-like domain [Bacillus anthracis...    57   2e-07
ref|NP_834470.1| hypothetical Cytosolic Protein [Bacillus cereus...    57   2e-07

>ref|NP_981214.1| conserved hypothetical protein [Bacillus cereus ATCC 10987]
 gb|AAS43822.1| conserved hypothetical protein [Bacillus cereus ATCC 10987]
          Length = 107

 Score = 58.5 bits (140), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 25/103 (24%), Positives = 57/103 (55%), Gaps = 2/103 (1%)

Query: 18  MQIQLDPLTRRRLGESLDGRPGFLKLFYDTEDCGC--NGVLVIQIVDSPNATDIVIQNEP 75
           M + +     +++ +++     ++KLFYD E CGC  +G++ +  V   +  D+ I++  
Sbjct: 1   MYVTVTEAAYKKIVDTIPNEAKYIKLFYDNEGCGCVMSGIIDLVAVAEKDERDVDIESSK 60

Query: 76  YTFLCDRQQESLFDSSMTLAADENYPSYKLTSPSSLFSSNIRV 118
           ++F+ DR +    D  +T+   E   +++L SPS  ++ N+++
Sbjct: 61  FSFIADRTKLVFMDDKLTVDWHEGGGTFQLKSPSQFYNPNMKL 103


>ref|NP_658803.1| HesB-like, HesB-like domain [Bacillus anthracis A2012]
 ref|NP_847218.1| conserved hypothetical protein [Bacillus anthracis str. Ames]
 gb|AAP28704.1| conserved hypothetical protein [Bacillus anthracis str. Ames]
          Length = 107

 Score = 56.6 bits (135), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/103 (24%), Positives = 55/103 (53%), Gaps = 2/103 (1%)

Query: 18  MQIQLDPLTRRRLGESLDGRPGFLKLFYDTEDCGC--NGVLVIQIVDSPNATDIVIQNEP 75
           M + +     +++ +++     ++KLFYD E CGC  +G++ +  V   +  D+ I++  
Sbjct: 1   MYVTVTEAAYKKIMDTIPNEAKYIKLFYDNEGCGCVMSGIIDLVAVAEKDERDVDIESSA 60

Query: 76  YTFLCDRQQESLFDSSMTLAADENYPSYKLTSPSSLFSSNIRV 118
             F+ DR +    D  +T+   E   +++L SPS  ++ N+++
Sbjct: 61  MNFIADRTKLVFMDDKLTVDWHEGGGTFQLKSPSQFYNPNMKL 103


>ref|NP_834470.1| hypothetical Cytosolic Protein [Bacillus cereus ATCC 14579]
 gb|AAP11671.1| hypothetical Cytosolic Protein [Bacillus cereus ATCC 14579]
          Length = 107

 Score = 56.6 bits (135), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/103 (24%), Positives = 55/103 (53%), Gaps = 2/103 (1%)

Query: 18  MQIQLDPLTRRRLGESLDGRPGFLKLFYDTEDCGC--NGVLVIQIVDSPNATDIVIQNEP 75
           M + +     +++ +++     ++KLFYD E CGC  +G++ +  V   +  D+ I++  
Sbjct: 1   MYVTVTEAAYKKIMDTIPSEAKYIKLFYDNEGCGCVMSGIIDLVAVAEKDERDVDIESST 60

Query: 76  YTFLCDRQQESLFDSSMTLAADENYPSYKLTSPSSLFSSNIRV 118
             F+ DR +    D  +T+   E   +++L SPS  ++ N+++
Sbjct: 61  MNFIADRTKLVFMDDKLTVDWHEGGGTFQLKSPSQFYNPNMKL 103


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.322    0.139    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 169,329,761
Number of extensions: 6068474
Number of successful extensions: 11096
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 11095
Number of HSP's successfully gapped: 3
Length of query: 122
Length of database: 757,237,578
Length adjustment: 86
Effective length of query: 36
Effective length of database: 523,739,064
Effective search space: 18854606304
Effective search space used: 18854606304
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 120 (50.8 bits)