BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0340.0012.p
         (91 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_655326.1| TP_methylase, Tetrapyrrole (Corrin/Porphyrin) M...    95   4e-19
ref|NP_977870.1| uroporphyrin-III C-methyltransferase [Bacillus ...    95   5e-19
ref|NP_831206.1| Uroporphyrin-III C-methyltransferase [Bacillus ...    94   7e-19
emb|CAD48921.1| uroporphyrinogen III methyltransferase [Bacillus...    88   6e-17
ref|ZP_00128309.1| COG1648: Siroheme synthase (precorrin-2 oxida...    83   2e-15

>ref|NP_655326.1| TP_methylase, Tetrapyrrole (Corrin/Porphyrin) Methylases [Bacillus
           anthracis A2012]
 ref|NP_843901.1| uroporphyrin-III C-methyltransferase [Bacillus anthracis str. Ames]
 gb|AAP25387.1| uroporphyrin-III C-methyltransferase [Bacillus anthracis str. Ames]
          Length = 258

 Score = 95.1 bits (235), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 47/88 (53%), Positives = 61/88 (69%)

Query: 1   VDTLIIYMGVSTLAEIREQLLKHGKDPATPAALIENGTTVRERAVTGTLGNIDRLAAAMK 60
           V+TL +YMGVS L  I EQL+KHGKD +TPAA+IE GTT  +R V GTLG I  +A   +
Sbjct: 163 VETLAVYMGVSNLPYICEQLMKHGKDKSTPAAIIERGTTSMQRTVVGTLGTIVDVAKKEQ 222

Query: 61  ISNPAIIIIGESVTVRDQLLSLEKAVRS 88
           I NP++I+IGE V  R+++   EK   S
Sbjct: 223 IQNPSMIVIGEVVRFREKIHWFEKQTES 250


>ref|NP_977870.1| uroporphyrin-III C-methyltransferase [Bacillus cereus ATCC 10987]
 gb|AAS40478.1| uroporphyrin-III C-methyltransferase [Bacillus cereus ATCC 10987]
          Length = 258

 Score = 94.7 bits (234), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 47/88 (53%), Positives = 61/88 (69%)

Query: 1   VDTLIIYMGVSTLAEIREQLLKHGKDPATPAALIENGTTVRERAVTGTLGNIDRLAAAMK 60
           V+TL +YMGVS L  I EQL+KHGKD +TPAA+IE GTT  +R V GTLG I  +A   +
Sbjct: 163 VETLAVYMGVSNLPYICEQLIKHGKDKSTPAAIIERGTTSMQRTVVGTLGTIVDVAKKEQ 222

Query: 61  ISNPAIIIIGESVTVRDQLLSLEKAVRS 88
           I NP++I+IGE V  R ++   EK + S
Sbjct: 223 IQNPSMIVIGEVVRFRGKIHWFEKQIES 250


>ref|NP_831206.1| Uroporphyrin-III C-methyltransferase [Bacillus cereus ATCC 14579]
 gb|AAP08407.1| Uroporphyrin-III C-methyltransferase [Bacillus cereus ATCC 14579]
          Length = 259

 Score = 94.4 bits (233), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 46/84 (54%), Positives = 60/84 (71%)

Query: 1   VDTLIIYMGVSTLAEIREQLLKHGKDPATPAALIENGTTVRERAVTGTLGNIDRLAAAMK 60
           V+TL +YMGVS L  I EQL+KHGKD +TPAA+IE GTT  +R V GTLG I  +A   +
Sbjct: 164 VETLAVYMGVSNLPYICEQLMKHGKDKSTPAAIIEQGTTSMQRTVVGTLGTIVDVAKKEQ 223

Query: 61  ISNPAIIIIGESVTVRDQLLSLEK 84
           I NP++I+IGE V  R+++   EK
Sbjct: 224 IQNPSMIVIGEVVRFREKIHWFEK 247


>emb|CAD48921.1| uroporphyrinogen III methyltransferase [Bacillus megaterium]
          Length = 259

 Score = 88.2 bits (217), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 45/84 (53%), Positives = 54/84 (64%)

Query: 1   VDTLIIYMGVSTLAEIREQLLKHGKDPATPAALIENGTTVRERAVTGTLGNIDRLAAAMK 60
           VDTL IYMGV  L  I +QL+KHGK  ATP ALI  GT   +R VTGTLG I  +    +
Sbjct: 163 VDTLAIYMGVRNLPYICQQLMKHGKTSATPIALIHWGTCADQRTVTGTLGTIVDIVKEEQ 222

Query: 61  ISNPAIIIIGESVTVRDQLLSLEK 84
           I NP++II+GE V   D+L   EK
Sbjct: 223 IENPSMIIVGEVVNFHDRLNWFEK 246


>ref|ZP_00128309.1| COG1648: Siroheme synthase (precorrin-2 oxidase/ferrochelatase
           domain) [Pseudomonas syringae pv. syringae B728a]
          Length = 464

 Score = 83.2 bits (204), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 40/83 (48%), Positives = 55/83 (66%)

Query: 3   TLIIYMGVSTLAEIREQLLKHGKDPATPAALIENGTTVRERAVTGTLGNIDRLAAAMKIS 62
           TL+ YMG+  L  I EQL++HG+   TPAAL+E GTTV +R  TGTL N+ +L A   + 
Sbjct: 378 TLVFYMGLIGLPVICEQLIRHGRSADTPAALVEQGTTVNQRVFTGTLANLPQLVAEHDVH 437

Query: 63  NPAIIIIGESVTVRDQLLSLEKA 85
            P ++IIGE V +R++L   E A
Sbjct: 438 APTLVIIGEVVKLREKLAWFEGA 460


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.316    0.133    0.350 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 112,756,245
Number of extensions: 3572093
Number of successful extensions: 12140
Number of sequences better than 1.0e-05: 200
Number of HSP's gapped: 12117
Number of HSP's successfully gapped: 200
Length of query: 91
Length of database: 757,237,578
Length adjustment: 59
Effective length of query: 32
Effective length of database: 597,046,737
Effective search space: 19105495584
Effective search space used: 19105495584
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 120 (50.8 bits)