BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0340.0002.p (659 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_561891.1| probable tetracycline resistant protein [Clostr... 697 0.0 ref|NP_347490.1| Tetracycline resistance protein tetP, contain G... 682 0.0 ref|ZP_00098104.1| COG0480: Translation elongation factors (GTPa... 553 e-156 ref|ZP_00046766.1| COG0480: Translation elongation factors (GTPa... 490 e-137 ref|NP_964043.1| hypothetical protein LJ0028 [Lactobacillus john... 475 e-132 >ref|NP_561891.1| probable tetracycline resistant protein [Clostridium perfringens] dbj|BAB80681.1| probable tetracycline resistant protein [Clostridium perfringens str. 13] Length = 646 Score = 697 bits (1798), Expect = 0.0, Method: Compositional matrix adjust. Identities = 330/649 (50%), Positives = 458/649 (70%), Gaps = 10/649 (1%) Query: 5 TIGLLAHVDAGKTTFAEQLLYHTRAIRSRGRVDHKDTFLDTHEIEKARGITVFADQAEFI 64 TIG+LAHVD GKTTF+EQLLYHT++IR+RGRVDHK+++LD +EIEK RGIT++++ +F Sbjct: 4 TIGILAHVDGGKTTFSEQLLYHTKSIRNRGRVDHKNSYLDNNEIEKDRGITIYSEVGKFS 63 Query: 65 LGGTRYFLLDTPGHVDFSPEMERALQVLDYAVVIVSAVEGVEGHTETVWQLLRNHGIPTF 124 + Y+L+DTPGH+DFSPEMERA+ VLDYA++I+SAVEGV+GH+ET+W+LL + +PTF Sbjct: 64 IENQEYYLIDTPGHIDFSPEMERAISVLDYAILIISAVEGVQGHSETIWELLNKYKVPTF 123 Query: 125 FFINKTDRTGADPQRVFEEIRSGLSSSAWLLPQSECGKISEELKVFLAERDERLLDAYLE 184 FINK DR GA+ +V E++ LS + EE+ ERDE LL+ YLE Sbjct: 124 IFINKIDREGAEVNKVINEMKDKLSEDIIFFSSELEDETIEEV----VERDEDLLNLYLE 179 Query: 185 GSLNDTGWREALRSMVREGTIFPCMEGSALQDVGIDVFLDVLKSLTVTDYDAGL-PFAGR 243 G+L++ ++SM++E IFPC+ GSAL D G++ F+ +L+ T+Y+ F GR Sbjct: 180 GNLSEEELLNKIQSMIKELKIFPCLCGSALLDEGVEDFIRWFHNLSFTNYEESKDSFRGR 239 Query: 244 VYKIRHDEKGTRITYIKALQGVLKVREELKYGASEDAEPERITGIRKVNGLKYASVDWAA 303 V+K+RHDEKG R+T+IKAL G L+ +EEL Y E++ IR NG KY V+ Sbjct: 240 VFKVRHDEKGNRLTFIKALSGTLRTKEELTYLKEGKESLEKVNEIRIYNGSKYELVNEVR 299 Query: 304 AGELFAVTGLSAVRPGDGVGVLQDRRDSELVPTLKSRVLFEPPVHLKEVLTAFQLLGAED 363 +G++FAV G+ + GDG+G+ ++ ++VPTLKS+V++ ++ KEVL+ F++L +E+ Sbjct: 300 SGDIFAVVGVKGLESGDGIGI-ENIDSYDMVPTLKSKVVYREGLNPKEVLSWFKILESEE 358 Query: 364 PSLNVSWDMTLQELHIQVMGQIQLEILEQILRERFMIPVAFGPPEILYKETIAAPVYGCG 423 +L+VSWD L+E+H+ +MG++QLE+L+++++ RF + FG PEILYKET+ V G G Sbjct: 359 STLSVSWDERLKEIHVNIMGKVQLEVLKEVMKNRFNEEIEFGTPEILYKETLNEEVIGYG 418 Query: 424 HFEPLKHYAEVLLRIEPGERGSGLVFINECHTDDLAAGYQHQVGQYLLESGHHGLLTGSP 483 HFEPL HY+EV L+IEP ER SG+VF N+CH DDL G Q+ + ++ E H G+LTGSP Sbjct: 419 HFEPLGHYSEVHLKIEPLERNSGIVFENKCHADDLTVGNQNLIRTHIFECEHKGILTGSP 478 Query: 484 LTDLRMTLLSGRAHNKHTHGGDFREAALRALRQGLEQAENILLEPVYDLKIRIDTGDLGK 543 +TDL++TLL+GRAHNKHT GGDFREA RALRQGLE EN LLEP Y KI +D +G+ Sbjct: 479 ITDLKITLLTGRAHNKHTSGGDFREATKRALRQGLESGENKLLEPYYKFKIDVDLNLIGR 538 Query: 544 VMTDIQQANGRFSPPXXXXEITGTKAVISGKVPVATFLNYAVRLAALTQGKGALSLKVAE 603 VM DIQ+ +G F P I G +A I GK PV+TF+NY + + T+GKG LSLK Sbjct: 539 VMNDIQKMHGEFKDPI----IDGERATIEGKGPVSTFINYGMEFQSFTKGKGGLSLKFHG 594 Query: 604 YQPCHQTESVIALKNYNKDADPAYPSSSIFCAKGQSYSVPWDEAQAHMH 652 Y CH E +I Y+++AD Y S+SIFC+KGQ+Y V EA+ HMH Sbjct: 595 YDLCHNEEDIIEKVAYDRNADIDYTSTSIFCSKGQAYLVKGGEAKEHMH 643 >ref|NP_347490.1| Tetracycline resistance protein tetP, contain GTP-ase domain [Clostridium acetobutylicum] pir||C97005 tetracycline resistance protein tetP, contain GTP-ase domain [imported] - Clostridium acetobutylicum gb|AAK78830.1| Tetracycline resistance protein tetP, contain GTP-ase domain [Clostridium acetobutylicum] Length = 644 Score = 682 bits (1761), Expect = 0.0, Method: Compositional matrix adjust. Identities = 322/650 (49%), Positives = 443/650 (68%), Gaps = 11/650 (1%) Query: 3 NITIGLLAHVDAGKTTFAEQLLYHTRAIRSRGRVDHKDTFLDTHEIEKARGITVFADQAE 62 N TIGLLAHVDAGKTT AEQ+LYHT +IR RGRVDHKD+FLD +EK RGITVF++QA Sbjct: 2 NRTIGLLAHVDAGKTTLAEQILYHTNSIRKRGRVDHKDSFLDNSLVEKERGITVFSEQAI 61 Query: 63 FILGGTRYFLLDTPGHVDFSPEMERALQVLDYAVVIVSAVEGVEGHTETVWQLLRNHGIP 122 F G+ YFL+DTPGH+DFSPEMERA++++DYAV+I+S V+GV+ TE +W+LLR + +P Sbjct: 62 FEFKGSTYFLVDTPGHIDFSPEMERAIEIMDYAVLIISGVDGVQSQTENIWRLLRKYNVP 121 Query: 123 TFFFINKTDRTGADPQRVFEEIRSGLSSSAWLLPQSECGKISEELKVFLAERDERLLDAY 182 T FFINK DR A ++V +EI L+S +L+ +E ++E F+AE ++ L + Y Sbjct: 122 TIFFINKMDRLNASKEKVIKEIVENLTSKVFLIEGNE---MNENTIEFIAENNDDLCEIY 178 Query: 183 LEGSLNDTGWREALRSMVREGTIFPCMEGSALQDVGIDVFLDVLKSLTVTDYDAGLPFAG 242 L + W +++ M+++ IFPC GSAL+D+GI+ FL + +T T+Y+ F G Sbjct: 179 LSSGYEENLWFNSMKEMIKKNIIFPCFTGSALEDIGIEYFLQKMNLITYTEYNETEEFLG 238 Query: 243 RVYKIRHDEKGTRITYIKALQGVLKVREELKYGASEDAEPERITGIRKVNGLKYASVDWA 302 VYKIR+D+ +I YIKAL+G +KV++E++ S E+I IR NG KY + A Sbjct: 239 LVYKIRYDDNKNKIVYIKALKGSVKVKDEVRVENS----SEKIEDIRFYNGNKYKTEHKA 294 Query: 303 AAGELFAVTGLSAVRPGDGVGVLQDRRDSELVPTLKSRVLFEPPVHLKEVLTAFQLLGAE 362 AAGELFAV G+ VR GD VG D+ ++PTLKS+V+F+ ++ +VL F+++ E Sbjct: 295 AAGELFAVVGIKNVRSGDFVGSFSDKIKYNMIPTLKSKVVFDEGINANQVLEYFKIIEEE 354 Query: 363 DPSLNVSWDMTLQELHIQVMGQIQLEILEQILRERFMIPVAFGPPEILYKETIAAPVYGC 422 +PSLN+ W+ L+ L I VMG+I+LEIL+ I+++RF + V FGP E+LYKETIA G Sbjct: 355 EPSLNILWNEKLRSLEIHVMGKIELEILKAIMKDRFNLEVDFGPCEVLYKETIAKKTNGY 414 Query: 423 GHFEPLKHYAEVLLRIEPGERGSGLVFINECHTDDLAAGYQHQVGQYLLESGHHGLLTGS 482 GHFEPL+HYAEV L++EP SG+ FI+EC T+ L G Q+ + ++ E HHG+LTGS Sbjct: 415 GHFEPLRHYAEVYLKLEPAPLNSGITFISECKTESLTLGEQNLIKTHIFEREHHGILTGS 474 Query: 483 PLTDLRMTLLSGRAHNKHTHGGDFREAALRALRQGLEQAENILLEPVYDLKIRIDTGDLG 542 +TD+++ L+ GR H KHT GGDFREA LRALRQGLE EN+LLEP Y KI +++ +G Sbjct: 475 VVTDIKVVLIDGRHHVKHTSGGDFREATLRALRQGLESTENVLLEPFYSFKIEVNSDSMG 534 Query: 543 KVMTDIQQANGRFSPPXXXXEITGTKAVISGKVPVATFLNYAVRLAALTQGKGALSLKVA 602 +VM DI + +G F+PP I K VI G+ PV F++Y L++ T+G+G +SL Sbjct: 535 RVMADINKMSGEFNPPY----IRENKCVIEGRGPVVEFMDYPASLSSFTKGRGRISLNFD 590 Query: 603 EYQPCHQTESVIALKNYNKDADPAYPSSSIFCAKGQSYSVPWDEAQAHMH 652 Y CH E VI NYNK+ D Y S+SIFC+KGQ+Y V MH Sbjct: 591 GYDVCHNREEVIHNINYNKNKDIEYTSTSIFCSKGQAYKVEGSRVVEFMH 640 >ref|ZP_00098104.1| COG0480: Translation elongation factors (GTPases) [Desulfitobacterium hafniense] Length = 882 Score = 553 bits (1425), Expect = e-156, Method: Compositional matrix adjust. Identities = 296/662 (44%), Positives = 411/662 (62%), Gaps = 30/662 (4%) Query: 1 MKNITIGLLAHVDAGKTTFAEQLLYHTRAIRSRGRVDHKDTFLDTHEIEKARGITVFADQ 60 MK + IGL AHVDAGKTT +E +LY + AIR GRVD+KD LDT E+E+ARGIT+F+ Q Sbjct: 1 MKKLVIGLCAHVDAGKTTLSESMLYLSGAIRKMGRVDNKDAHLDTFELERARGITIFSKQ 60 Query: 61 AEFILGGTRYFLLDTPGHVDFSPEMERALQVLDYAVVIVSAVEGVEGHTETVWQLLRNHG 120 A + T+ LLDTPGHVDFS EMER LQVLDYAV++++ +GV+GHT T+W LL + Sbjct: 61 ALLEVAHTQITLLDTPGHVDFSLEMERTLQVLDYAVLVINGADGVQGHTRTLWHLLDIYQ 120 Query: 121 IPTFFFINKTDRTGADPQRVFEEIRSGLSSSAWLLPQSECGKISEELKVFLAERDERLLD 180 P F FINK D+ G D +++ E++S LS Q E ++L A DE LLD Sbjct: 121 TPVFLFINKMDQVGTDREKLINELKSQLSDGCIDFGQPESTDFYDQL----AMCDEMLLD 176 Query: 181 AYLEGSLNDTGWREA--LRSMVREGTIFPCMEGSALQDVGIDVFLDVLKSLTVTDYDAGL 238 AY+ DTG E +R +R+ ++PC GSAL+ G++ L + DY A L Sbjct: 177 AYV-----DTGHIELPLIREGIRKRKVYPCFFGSALKLEGVEELLQ-----GIVDY-AHL 225 Query: 239 P-----FAGRVYKIRHDEKGTRITYIKALQGVLKVREELKYGASEDAEPERITGIRKVNG 293 P F +V+KI DE+G R+TY+K G LKVRE L G E E++ IR +G Sbjct: 226 PAYPESFGAKVFKIGRDEQGNRLTYLKITGGRLKVRESLSNGVWE----EKVNQIRIYSG 281 Query: 294 LKYASVDWAAAGELFAVTGLSAVRPGDGVGVLQDRRDSELVPTLKSRVLFEPPVHLKEVL 353 K+ +V+ AG + AVTGL+ +PG+G+G L P L +++ + ++ Sbjct: 282 KKFEAVNEVEAGSVCAVTGLTLTKPGEGLGTETAAHSPLLEPVLAYQMILPEGCDPRVMM 341 Query: 354 TAFQLLGAEDPSLNVSWDMTLQELHIQVMGQIQLEILEQILRERFMIPVAFGPPEILYKE 413 + L EDP L V WD L+E+ +Q+MG++QLEIL+ ++R RF + V+FG I+YKE Sbjct: 342 PKLRQLEEEDPGLQVVWDEELREIQVQMMGEVQLEILQSLIRSRFGLEVSFGSGRIVYKE 401 Query: 414 TIAAPVYGCGHFEPLKHYAEVLLRIEPGERGSGLVFINECHTDDLAAGYQHQVGQYLLES 473 TI V G GHFEPL+HYAEV L +EPGERGSGL F +C D L+ +Q V +L E Sbjct: 402 TIGNAVEGVGHFEPLRHYAEVHLLMEPGERGSGLQFGAQCSEDSLSKSWQRLVLSHLEEK 461 Query: 474 GHHGLLTGSPLTDLRMTLLSGRAHNKHTHGGDFREAALRALRQGLEQAENILLEPVYDLK 533 H G+LTGSP+TDL++TL+SGRAH KHT GGDFREA RA+RQGL +AE+ILLEP Y + Sbjct: 462 VHKGVLTGSPITDLKITLVSGRAHTKHTDGGDFREATYRAVRQGLMEAESILLEPYYAFQ 521 Query: 534 IRIDTGDLGKVMTDIQQANGRFSPPXXXXEITGTKAVISGKVPVATFLNYAVRLAALTQG 593 + + +G+ M D+++ +G I G +A ++G PVAT NY + A ++G Sbjct: 522 LELPEKMVGRAMNDVEKMHGTCQ----LARIEGERATLTGSAPVATMRNYQQEVMAYSKG 577 Query: 594 KGALSLKVAEYQPCHQTESVIALKNYNKDADPAYPSSSIFCAKGQSYSVPWDEAQAHMHI 653 G L + Y+PCH + VIA+ Y+ + D P+ S+FCA+G Y VPW + + +MH+ Sbjct: 578 LGRLFCSLKGYEPCHNPDEVIAMAGYDPERDVDNPADSVFCAQGSGYLVPWYQVKEYMHV 637 Query: 654 TN 655 + Sbjct: 638 ES 639 >ref|ZP_00046766.1| COG0480: Translation elongation factors (GTPases) [Lactobacillus gasseri] Length = 640 Score = 490 bits (1262), Expect = e-137, Method: Compositional matrix adjust. Identities = 273/655 (41%), Positives = 379/655 (57%), Gaps = 28/655 (4%) Query: 1 MKNITIGLLAHVDAGKTTFAEQLLYHTRAIRSRGRVDHKDTFLDTHEIEKARGITVFADQ 60 MK +TIG+LAHVDAGKTT +E LLY + +R G VD +LD +EK RGIT+F+ Sbjct: 1 MKKVTIGILAHVDAGKTTLSEGLLYQSGTLRKLGAVDKGTAYLDNDNLEKKRGITIFSHM 60 Query: 61 AEFILGGTRYFLLDTPGHVDFSPEMERALQVLDYAVVIVSAVEGVEGHTETVWQLLRNHG 120 A + LLDTPGH+DF+ EME L VLDYA+++VSA EGV +T+T+W LL++H Sbjct: 61 ARIKTENSELLLLDTPGHIDFAQEMEETLSVLDYAILVVSASEGVTAYTQTLWNLLKSHK 120 Query: 121 IPTFFFINKTDRTGADPQRVFEEIRSGLSSSAWLLPQSECGKISEELKVFLAERDERLLD 180 IPTF F+NK D AD ++V ++ S L S E G + +A DE +L+ Sbjct: 121 IPTFIFVNKMDTLKADKEKVLHDL-STLDDSC-----VEFGDEDSDFYEKIATADEAILE 174 Query: 181 AYLE-GSLNDTGWREALRSMVREGTIFPCMEGSALQDVGIDVFLDVLKSLTVTDYDAGLP 239 YLE G + D + ++ ++ + +FP G+AL+ G+ FL L T + Sbjct: 175 EYLESGQIKD----KEIQDLISQRKVFPVYFGAALKLKGVAEFLQGLDKWT-KKIEYSEK 229 Query: 240 FAGRVYKIRHDEKGTRITYIKALQGVLKVREELKYGASEDAEPERITGIRKVNGLKYASV 299 FA R++KI HDEKG R+T++K G L+ + EL E++ IR NG KY V Sbjct: 230 FASRIFKISHDEKGERLTWLKVTGGELRAKSEL-------MPDEKVNEIRLYNGNKYEVV 282 Query: 300 DWAAAGELFAVTGLSAVRPGDGVGVLQDRRDSELVPTLKSRVLFEPPVHLKEVLTAFQLL 359 AGE+ AV+GL PG G+G +D+ + + P L V P L A + L Sbjct: 283 SSVQAGEIVAVSGLKTTYPGQGIGFEKDQMNFTMQPVLNYAVQTTPD-KTHATLAALRQL 341 Query: 360 GAEDPSLNVSWDMTLQELHIQVMGQIQLEILEQILRERFMIPVAFGPPEILYKETIAAPV 419 E+P L+V WD +E+ I VMG+IQLEIL+QIL +RF + V F +ILY+E+I V Sbjct: 342 EDENPQLHVKWDKQTEEISIDVMGKIQLEILQQILHDRFNLEVEFTQGKILYQESIRNSV 401 Query: 420 YGCGHFEPLKHYAEVLLRIEPGERGSGLVFINECHTDDLAAGYQHQVGQYLLESGHHGLL 479 G GHFEPL+HYAEV L ++PG+ GSGLVF NEC + L +Q QV + L H G+L Sbjct: 402 EGVGHFEPLRHYAEVHLLLKPGKLGSGLVFKNECSLEVLPKKWQDQVMESLANKEHLGVL 461 Query: 480 TGSPLTDLRMTLLSGRAHNKHTHGGDFREAALRALRQGL----EQAENILLEPVYDLKIR 535 TGSPLTD+ +TL+ GR N HT GGDFREA RA+RQGL Q + LLEP Y +R Sbjct: 462 TGSPLTDVEITLIGGRGSNVHTVGGDFREATYRAVRQGLMELKAQNQVSLLEPWYQFTLR 521 Query: 536 IDTGDLGKVMTDIQQANGRFSPPXXXXEITGTKAVISGKVPVATFLNYAVRLAALTQGKG 595 I+ +G+ + DI++ G+F +I I+G+ PVA +YA + + G G Sbjct: 522 INQDQVGRAINDIEKMGGKFKIGESDHDI----VTITGQAPVAQMQDYATEVRNYSHGSG 577 Query: 596 ALSLKVAEYQPCHQTESVIALKNYNKDADPAYPSSSIFCAKGQSYSVPWDEAQAH 650 L A YQ C + VIA NY+ +D +S+FC+ G ++V WDE ++ Sbjct: 578 QLECLFAGYQECKSSAEVIADANYDPVSDINNTPNSVFCSHGAGHTVVWDEVPSY 632 >ref|NP_964043.1| hypothetical protein LJ0028 [Lactobacillus johnsonii NCC 533] gb|AAS08009.1| hypothetical protein LJ0028 [Lactobacillus johnsonii NCC 533] Length = 639 Score = 475 bits (1222), Expect = e-132, Method: Compositional matrix adjust. Identities = 262/655 (40%), Positives = 377/655 (57%), Gaps = 28/655 (4%) Query: 1 MKNITIGLLAHVDAGKTTFAEQLLYHTRAIRSRGRVDHKDTFLDTHEIEKARGITVFADQ 60 MK +T G+LAHVDAGKTT +E +LY + +R G VD +LD+ ++EK RGIT+F+ Sbjct: 1 MKKLTTGILAHVDAGKTTLSEGMLYKSGTLRKLGAVDKGTAYLDSDDLEKKRGITIFSHI 60 Query: 61 AEFILGGTRYFLLDTPGHVDFSPEMERALQVLDYAVVIVSAVEGVEGHTETVWQLLRNHG 120 A G + +LDTPGH+DF+ EME L VLDYA+++VSA EGV G+T T+W LL+ H Sbjct: 61 ARIQTGNSELQILDTPGHIDFAQEMEETLSVLDYAILVVSASEGVTGYTRTLWSLLKKHQ 120 Query: 121 IPTFFFINKTDRTGADPQRVFEEIRSGLSSSAWLLPQSECGKISEELKVFLAERDERLLD 180 IP F F+NK D AD + + +++ + E G + +A DE LD Sbjct: 121 IPVFIFVNKMDTLKADKENILKQLNELDDNFI------EFGNQDADFYEKVATADETTLD 174 Query: 181 AYLE-GSLNDTGWREALRSMVREGTIFPCMEGSALQDVGIDVFLDVLKSLTVTDYDAGLP 239 YLE G + D+ A++ ++ + IFP G+AL+ +GID FL L T Sbjct: 175 QYLELGKIEDS----AVKKLINQRKIFPVYFGAALKLIGIDEFLAGLDKWTDGKKYTN-D 229 Query: 240 FAGRVYKIRHDEKGTRITYIKALQGVLKVREELKYGASEDAEPERITGIRKVNGLKYASV 299 F R++K+ +DEKG R+T++K G LK + E+ E++ IR+ NG KY + Sbjct: 230 FGARIFKVSYDEKGERLTWLKVTGGSLKAKTEI-------FPDEKVNEIRRYNGTKYQVI 282 Query: 300 DWAAAGELFAVTGLSAVRPGDGVGVLQDRRDSELVPTLKSRVLFEPPVHLKEVLTAFQLL 359 A A E+ AV+GL + PG G+G D+ + + P L V + + L A + L Sbjct: 283 PQAEASEIIAVSGLKSTYPGQGLGFENDQTNFTVQPVLTYAVKVDS-ANTNACLQALKQL 341 Query: 360 GAEDPSLNVSWDMTLQELHIQVMGQIQLEILEQILRERFMIPVAFGPPEILYKETIAAPV 419 E+P L+V W+ QE+ I V+G+IQLEIL+Q+LR+RF + V F +ILY+E+I A V Sbjct: 342 EDENPQLHVKWNKQTQEISIDVLGKIQLEILQQLLRDRFNLEVEFTQGKILYQESIKASV 401 Query: 420 YGCGHFEPLKHYAEVLLRIEPGERGSGLVFINECHTDDLAAGYQHQVGQYLLESGHHGLL 479 G GHFEPL+HYAEV L + PG+ GSGLVF N C + L +Q QV + L H G+L Sbjct: 402 EGVGHFEPLRHYAEVHLLLTPGKNGSGLVFKNNCSLEVLPKKWQDQVMESLSNKEHLGVL 461 Query: 480 TGSPLTDLRMTLLSGRAHNKHTHGGDFREAALRALRQGL----EQAENILLEPVYDLKIR 535 T SP+TDL +TL+ GR N HT GGDFREA RA+RQGL + + LLEP Y +R Sbjct: 462 TESPITDLEITLVGGRGSNVHTVGGDFREATYRAVRQGLMELKARKQVYLLEPWYQFTLR 521 Query: 536 IDTGDLGKVMTDIQQANGRFSPPXXXXEITGTKAVISGKVPVATFLNYAVRLAALTQGKG 595 I+ +G+ + DI++ G+F E +G ISG+ PVA +YA + T G G Sbjct: 522 INQDQVGRAINDIERMGGKFE----LGESSGNVTTISGQAPVAQMQDYATEVRNYTHGTG 577 Query: 596 ALSLKVAEYQPCHQTESVIALKNYNKDADPAYPSSSIFCAKGQSYSVPWDEAQAH 650 L Y+ C + ++I Y+ +D +S+FC+ G ++V W+E +H Sbjct: 578 QLECLFLGYRECKDSAAIIEEMAYDPLSDINNTPNSVFCSHGAGHTVLWNEVPSH 632 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.319 0.137 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 964,836,864 Number of extensions: 40712358 Number of successful extensions: 101310 Number of sequences better than 1.0e-05: 3728 Number of HSP's gapped: 96970 Number of HSP's successfully gapped: 4088 Length of query: 659 Length of database: 757,237,578 Length adjustment: 132 Effective length of query: 527 Effective length of database: 398,844,510 Effective search space: 210191056770 Effective search space used: 210191056770 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)