BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0337.0021.p (301 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00182473.1| hypothetical protein Exigu222301 [Exiguobacte... 289 4e-77 ref|ZP_00134016.1| COG2822: Predicted periplasmic lipoprotein in... 242 9e-63 ref|NP_469730.1| conserved hypothetical protein, putative lipopr... 236 3e-61 ref|NP_463896.1| conserved hypothetical protein, putative lipopr... 236 4e-61 ref|NP_391706.1| alternate gene name: ipa-28d~similar to hypothe... 231 1e-59 >ref|ZP_00182473.1| hypothetical protein Exigu222301 [Exiguobacterium sp. 255-15] Length = 276 Score = 289 bits (740), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 141/233 (60%), Positives = 176/233 (75%) Query: 67 IEQYRAYVIEQCDEFVKQTEAFTTAVKTGKLEDAKALYAPARMYYERIEPIAEALGDLDP 126 + YR Y I + ++F KQTEAFTTAVK G L +AKALYAP RM+YER EPIAE GDLDP Sbjct: 42 VADYRTYAIAELEQFTKQTEAFTTAVKEGDLAEAKALYAPTRMHYERAEPIAEVFGDLDP 101 Query: 127 NIDARENDVDPAEWRGFHKIEQALWQKNSTDGVTGTADQLLKDAQLLRAKVETVDIDESL 186 IDARE DV +EW G+H+IEQ L++K +T+G G ADQL++D LLRAKVETV++ L Sbjct: 102 KIDAREGDVKESEWGGYHRIEQGLFEKGTTEGYEGYADQLMQDVHLLRAKVETVEVTPEL 161 Query: 187 LVTGAVELLNEVSSSKVTGEEERYSHTDLYDFVANVEGAQKIYELLKPELTKKDPSLAQT 246 LVTGA +LLNEVS+SKVTGEE+RYSHTDLYDF ANV+GA+KIY+LL P L K+D +L++ Sbjct: 162 LVTGATDLLNEVSTSKVTGEEDRYSHTDLYDFAANVQGAEKIYQLLNPALQKQDAALSKE 221 Query: 247 IGERFDALLAELAPFKSGDGYVSYETLKEDEVRKLSQNLDALAEPLSNMGTIL 299 I RF + L K DGYV Y L + +V++LSQ ++ LAEPLS MG +L Sbjct: 222 IAARFADVNGLLEAKKKEDGYVLYTALSKADVKQLSQAINELAEPLSKMGIVL 274 >ref|ZP_00134016.1| COG2822: Predicted periplasmic lipoprotein involved in iron transport [Actinobacillus pleuropneumoniae serovar 1 str. 4074] Length = 270 Score = 242 bits (617), Expect = 9e-63, Method: Compositional matrix adjust. Identities = 120/240 (50%), Positives = 167/240 (69%), Gaps = 8/240 (3%) Query: 68 EQYRAYVIEQCDEFVKQTEAFTTAVKTGKLEDAKALYAPARMYYERIEPIAEALGDLDPN 127 E Y+ +V+EQ D V TE F + G ++ AK +Y ARMY+ER EPIAE+ GDLDP Sbjct: 29 ETYKQFVVEQIDRLVTDTEKFVAYLDKGDVQKAKQIYPLARMYFERSEPIAESFGDLDPR 88 Query: 128 IDARENDVDP-----AEWRGFHKIEQALWQKNSTDGVTGTADQLLKDAQLLRAKVETVDI 182 IDAR D+ +W GFHKIE+ LW+KN+T+G TA+QLLKD + LRAK+ T ++ Sbjct: 89 IDARLADLTEEGKTEKDWSGFHKIEKVLWEKNTTEGTKATAEQLLKDVKELRAKIPTAEV 148 Query: 183 DESLLVTGAVELLNEVSSSKVTGEEERYSHTDLYDFVANVEGAQKIYELLKPELTKKDPS 242 L++TGAV+LLNEVS++KVTGEEE +S TDLYDF AN+EGA+KIYE+ KP+L K D Sbjct: 149 TPELMITGAVDLLNEVSTTKVTGEEEIFSKTDLYDFKANIEGAEKIYEIFKPQLDKTDAK 208 Query: 243 LAQTIGERF---DALLAELAPFKSGDGYVSYETLKEDEVRKLSQNLDALAEPLSNMGTIL 299 L+ I RF ++LLA+ K+G YV+Y L +++V+ L++ ++ L EPL+ +G +L Sbjct: 209 LSAEIAARFATVNSLLAKHNKAKNGYDYVAYNKLSKNDVKALAEAVNQLGEPLAQLGVLL 268 >ref|NP_469730.1| conserved hypothetical protein, putative lipoprotein [Listeria innocua] pir||AB1481 conserved hypothetical protein, probable lipoprotein lin0385 [imported] - Listeria innocua (strain Clip11262) emb|CAC95618.1| lin0385 [Listeria innocua] Length = 386 Score = 236 bits (603), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 118/234 (50%), Positives = 163/234 (69%), Gaps = 1/234 (0%) Query: 67 IEQYRAYVIEQCDEFVKQTEAFTTAVKTGKLEDAKALYAPARMYYERIEPIAEALGDLDP 126 ++ Y YV +Q DEFV QTE FT AVK+G +E AKA Y R+ YERIEPIAE+ GDLDP Sbjct: 153 VDNYYKYVTDQVDEFVAQTEIFTNAVKSGDIEKAKATYVSPRLNYERIEPIAESFGDLDP 212 Query: 127 NIDARENDV-DPAEWRGFHKIEQALWQKNSTDGVTGTADQLLKDAQLLRAKVETVDIDES 185 IDAR NDV + A+W GFH IE+ALW+K S DG+ AD+LL DA+ L+A+V+ + ++ Sbjct: 213 KIDARINDVENEADWTGFHVIERALWEKKSLDGMDVYADKLLTDAKALQAEVKNLKLEPK 272 Query: 186 LLVTGAVELLNEVSSSKVTGEEERYSHTDLYDFVANVEGAQKIYELLKPELTKKDPSLAQ 245 +V GA+ELLNE +++K+TGEEE YSHTDL D ANVEG++ +Y+ + P L +D LA Sbjct: 273 PMVAGAMELLNEAATTKITGEEEAYSHTDLDDLNANVEGSKVVYQAIIPALNAQDKDLAD 332 Query: 246 TIGERFDALLAELAPFKSGDGYVSYETLKEDEVRKLSQNLDALAEPLSNMGTIL 299 I F+ + LA +K+GD +V Y TL +D++R++S L L+E ++ G I Sbjct: 333 QIDAAFNKMEDTLANYKNGDSFVLYTTLTKDQIREISDQLSHLSELMAQTGKIF 386 >ref|NP_463896.1| conserved hypothetical protein, putative lipoprotein [Listeria monocytogenes EGD-e] pir||AG1120 conserved hypothetical protein, probable lipoprotein lmo0366 [imported] - Listeria monocytogenes (strain EGD-e) emb|CAC98445.1| lmo0366 [Listeria monocytogenes] Length = 386 Score = 236 bits (603), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 118/234 (50%), Positives = 162/234 (69%), Gaps = 1/234 (0%) Query: 67 IEQYRAYVIEQCDEFVKQTEAFTTAVKTGKLEDAKALYAPARMYYERIEPIAEALGDLDP 126 ++ Y YV EQ DEFV QTE FT AVK+G +E AKA Y R+ YERIEPIAE+ GDLDP Sbjct: 153 VDNYSKYVTEQVDEFVAQTEIFTNAVKSGDIEKAKAAYVSPRLNYERIEPIAESFGDLDP 212 Query: 127 NIDARENDV-DPAEWRGFHKIEQALWQKNSTDGVTGTADQLLKDAQLLRAKVETVDIDES 185 IDAR NDV + A+W GFH IE+ALW+K S +G+ AD+LL DA+ L+A+V+ + ++ Sbjct: 213 KIDARINDVENEADWTGFHVIERALWEKKSLEGMDVYADKLLTDAKALQAEVKNLKLEPK 272 Query: 186 LLVTGAVELLNEVSSSKVTGEEERYSHTDLYDFVANVEGAQKIYELLKPELTKKDPSLAQ 245 +V GA+ELLNE +++K+TGEEE YSHTDL D ANVEG++ +Y+ + P L +D LA Sbjct: 273 PMVAGAMELLNEAATTKITGEEEAYSHTDLDDLNANVEGSKVVYQAIIPALNAQDKKLAD 332 Query: 246 TIGERFDALLAELAPFKSGDGYVSYETLKEDEVRKLSQNLDALAEPLSNMGTIL 299 I F+ + LA +K+GD +V Y TL +D++R +S L L+E ++ G I Sbjct: 333 QIDAAFNKMEDTLANYKNGDSFVLYTTLTKDQIRDISDQLSHLSELMAQTGKIF 386 >ref|NP_391706.1| alternate gene name: ipa-28d~similar to hypothetical proteins [Bacillus subtilis] sp|P39596|YWBM_BACSU Hypothetical protein ywbM pir||S39683 ywbM protein - Bacillus subtilis emb|CAA51584.1| ipa-28d [Bacillus subtilis] emb|CAB15853.1| ywbM [Bacillus subtilis subsp. subtilis str. 168] Length = 385 Score = 231 bits (590), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 114/234 (48%), Positives = 157/234 (67%), Gaps = 2/234 (0%) Query: 68 EQYRAYVIEQCDEFVKQTEAFTTAVKTGKLEDAKALYAPARMYYERIEPIAEALGDLDPN 127 ++Y+ YV EQ D+ VK TEAFT AVK+G +E +K LYA AR+YYERIEPIAE+LGDLDP Sbjct: 152 DEYKGYVKEQSDQLVKATEAFTGAVKSGDIEKSKTLYAKARVYYERIEPIAESLGDLDPK 211 Query: 128 IDARENDVDPAE-WRGFHKIEQALWQKNSTDGVTGTADQLLKDAQLLRAKVETVDIDESL 186 IDARENDV+ + W GFHK+E+A+W+ G TADQLLKD + L ++++ + Sbjct: 212 IDARENDVEEGDKWTGFHKLEKAIWKDQDISGEKATADQLLKDVKELDGSIQSLKLTPEQ 271 Query: 187 LVTGAVELLNEVSSSKVTGEEERYSHTDLYDFVANVEGAQKIYELLKPELTKKDPSLAQT 246 +V GA+ELLNE SK+TGEEERYS DL D +ANVEG++ +Y+ +K L K L + Sbjct: 272 IVAGAMELLNEAGISKITGEEERYSRIDLVDLMANVEGSEAVYQTVKSALVKDHSDLTEK 331 Query: 247 IGERFDALLAELAPFKSGD-GYVSYETLKEDEVRKLSQNLDALAEPLSNMGTIL 299 + F +A +K+ D Y SY+ L E ++R+LS L L+E +S + +L Sbjct: 332 LDTEFSEFEVLMAKYKTNDQSYTSYDKLSEKQIRELSTKLTTLSETMSKIANVL 385 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.314 0.133 0.368 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 358,346,953 Number of extensions: 13669330 Number of successful extensions: 31559 Number of sequences better than 1.0e-05: 29 Number of HSP's gapped: 31517 Number of HSP's successfully gapped: 29 Length of query: 301 Length of database: 757,237,578 Length adjustment: 125 Effective length of query: 176 Effective length of database: 417,850,203 Effective search space: 73541635728 Effective search space used: 73541635728 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 125 (52.8 bits)