BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0337.0011.p (253 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_833170.1| Daunorubicin resistance ATP-binding protein drr... 381 e-105 ref|NP_657353.1| ABC_tran, ABC transporter [Bacillus anthracis A... 379 e-104 ref|NP_244847.1| ABC transporter (ATP-binding protein) [Bacillus... 379 e-104 ref|NP_979747.1| ABC transporter, ATP-binding protein [Bacillus ... 376 e-103 ref|ZP_00098156.1| COG1131: ABC-type multidrug transport system,... 375 e-103 >ref|NP_833170.1| Daunorubicin resistance ATP-binding protein drrA [Bacillus cereus ATCC 14579] gb|AAP10371.1| Daunorubicin resistance ATP-binding protein drrA [Bacillus cereus ATCC 14579] Length = 253 Score = 381 bits (978), Expect = e-105, Method: Compositional matrix adjust. Identities = 186/251 (74%), Positives = 216/251 (86%) Query: 1 MQTKSIQVKGLQKSYRQLQVLKGVDFEVEKGSIFALLGSNGAGKTTVVKILSTLLKPDSG 60 M +I VKGL+KS++ +VLKGVDFEV++G IFALLGSNGAGKTT V ILSTL+K DSG Sbjct: 1 MSHAAISVKGLKKSFKDKEVLKGVDFEVQRGEIFALLGSNGAGKTTTVNILSTLMKQDSG 60 Query: 61 TVSVNGFDVAAKPGDVRQSISLTGQFAAVDEILTGRENLIMIARLRHLDHPRQVADDLLR 120 VS+ GFDV ++ VRQSISLTGQFAA+D +LTGRENLIMIA+LR + +P QVAD+LL Sbjct: 61 EVSICGFDVQSQSDHVRQSISLTGQFAALDGMLTGRENLIMIAKLRGVSNPAQVADNLLA 120 Query: 121 RFGLTDAADRKASVYSGGMRRRLDIAMSLVGKPQLIFLDEPTTGLDPEARIEAWKIVKEL 180 RF LTDAA+++A YSGGM+RRLDIAMSL+G P +IFLDEPTTGLDPEARIE W VKEL Sbjct: 121 RFSLTDAANQRADQYSGGMKRRLDIAMSLIGAPAVIFLDEPTTGLDPEARIEVWDTVKEL 180 Query: 181 ADGGTTVFLTTQYLEEAEQLADRIAILHEGRIIASGTLAELKKLFPSAKVEYVEKQPTLE 240 A GTT+ LTTQYLEEAEQLADRIAILH G+II +GTLAELK++FP AKVEY+EKQPTLE Sbjct: 181 AGSGTTILLTTQYLEEAEQLADRIAILHGGKIITTGTLAELKEMFPPAKVEYIEKQPTLE 240 Query: 241 EIFLAIIGKKE 251 EIFL+IIGKKE Sbjct: 241 EIFLSIIGKKE 251 >ref|NP_657353.1| ABC_tran, ABC transporter [Bacillus anthracis A2012] ref|NP_845773.1| ABC transporter, ATP-binding protein [Bacillus anthracis str. Ames] gb|AAP27259.1| ABC transporter, ATP-binding protein [Bacillus anthracis str. Ames] Length = 253 Score = 379 bits (972), Expect = e-104, Method: Compositional matrix adjust. Identities = 184/251 (73%), Positives = 214/251 (85%) Query: 1 MQTKSIQVKGLQKSYRQLQVLKGVDFEVEKGSIFALLGSNGAGKTTVVKILSTLLKPDSG 60 M +I VKGL+KS++ +VL GVDFEV++G IFALLGSNGAGKTT V ILSTL+K DSG Sbjct: 1 MSNTAISVKGLKKSFKDKEVLIGVDFEVQRGEIFALLGSNGAGKTTAVNILSTLMKQDSG 60 Query: 61 TVSVNGFDVAAKPGDVRQSISLTGQFAAVDEILTGRENLIMIARLRHLDHPRQVADDLLR 120 V + GFD+ +P VRQSISLTGQFAA+D +LTG+ENLIMIA+LR + +P QVAD+LL Sbjct: 61 EVRICGFDIKRQPDHVRQSISLTGQFAALDGMLTGKENLIMIAKLRGVSNPAQVADNLLE 120 Query: 121 RFGLTDAADRKASVYSGGMRRRLDIAMSLVGKPQLIFLDEPTTGLDPEARIEAWKIVKEL 180 RF LTDAA+++A YSGGM+RRLDIAMSL+G P +IFLDEPTTGLDPEARIE W VKEL Sbjct: 121 RFSLTDAANQRADQYSGGMKRRLDIAMSLIGAPAVIFLDEPTTGLDPEARIEVWDTVKEL 180 Query: 181 ADGGTTVFLTTQYLEEAEQLADRIAILHEGRIIASGTLAELKKLFPSAKVEYVEKQPTLE 240 A GGTT+ LTTQYLEEAEQLADRIAILH G+II +GTL ELK++FP AKVEY+EKQPTLE Sbjct: 181 AGGGTTILLTTQYLEEAEQLADRIAILHGGKIITTGTLTELKEMFPPAKVEYIEKQPTLE 240 Query: 241 EIFLAIIGKKE 251 EIFLAIIGKKE Sbjct: 241 EIFLAIIGKKE 251 >ref|NP_244847.1| ABC transporter (ATP-binding protein) [Bacillus halodurans] pir||C84147 ABC transporter (ATP-binding protein) BH3979 [imported] - Bacillus halodurans (strain C-125) dbj|BAB07698.1| ABC transporter (ATP-binding protein) [Bacillus halodurans] Length = 257 Score = 379 bits (972), Expect = e-104, Method: Compositional matrix adjust. Identities = 186/251 (74%), Positives = 213/251 (84%) Query: 1 MQTKSIQVKGLQKSYRQLQVLKGVDFEVEKGSIFALLGSNGAGKTTVVKILSTLLKPDSG 60 M +I VK L+KS++ VLKGVDF V++G IFALLGSNGAGKTT V ILSTLLKPD G Sbjct: 1 MSHTAISVKRLKKSFKNKDVLKGVDFAVQRGEIFALLGSNGAGKTTTVNILSTLLKPDEG 60 Query: 61 TVSVNGFDVAAKPGDVRQSISLTGQFAAVDEILTGRENLIMIARLRHLDHPRQVADDLLR 120 S+ GFDV +P VRQSISLTGQFAA+D +LTGRENL++IA+LR + +P QVAD LL Sbjct: 61 EASICGFDVQRQPDHVRQSISLTGQFAALDGMLTGRENLMIIAKLRGVPNPSQVADHLLA 120 Query: 121 RFGLTDAADRKASVYSGGMRRRLDIAMSLVGKPQLIFLDEPTTGLDPEARIEAWKIVKEL 180 RF LTDAA+R+A YSGGM+RRLDIAMSL+GKP +IFLDEPTTGLDPE RIE W VKEL Sbjct: 121 RFSLTDAANRRADQYSGGMKRRLDIAMSLIGKPAVIFLDEPTTGLDPEGRIEVWDAVKEL 180 Query: 181 ADGGTTVFLTTQYLEEAEQLADRIAILHEGRIIASGTLAELKKLFPSAKVEYVEKQPTLE 240 A GGTT+ LTTQYLEEAEQLADRIAILH+G+II +GTLAELK++FP AKVEYVEKQPTLE Sbjct: 181 AGGGTTILLTTQYLEEAEQLADRIAILHDGKIITTGTLAELKEMFPPAKVEYVEKQPTLE 240 Query: 241 EIFLAIIGKKE 251 +IFLAIIGKKE Sbjct: 241 DIFLAIIGKKE 251 >ref|NP_979747.1| ABC transporter, ATP-binding protein [Bacillus cereus ATCC 10987] gb|AAS42355.1| ABC transporter, ATP-binding protein [Bacillus cereus ATCC 10987] Length = 253 Score = 376 bits (966), Expect = e-103, Method: Compositional matrix adjust. Identities = 183/250 (73%), Positives = 213/250 (85%) Query: 1 MQTKSIQVKGLQKSYRQLQVLKGVDFEVEKGSIFALLGSNGAGKTTVVKILSTLLKPDSG 60 M +I VKGL+K++R +VLKGVDFEV++G IFALLGSNGAGKTT+V ILSTLLK D G Sbjct: 1 MSNAAISVKGLKKAFRDKEVLKGVDFEVQRGEIFALLGSNGAGKTTIVNILSTLLKQDGG 60 Query: 61 TVSVNGFDVAAKPGDVRQSISLTGQFAAVDEILTGRENLIMIARLRHLDHPRQVADDLLR 120 S+ GFD+ +P VRQSISLTGQFAA+D +LTGRENLIM+A+LR + +P QVAD+LL Sbjct: 61 EGSICGFDIKRQPDHVRQSISLTGQFAALDGMLTGRENLIMVAKLRGVSNPAQVADNLLE 120 Query: 121 RFGLTDAADRKASVYSGGMRRRLDIAMSLVGKPQLIFLDEPTTGLDPEARIEAWKIVKEL 180 RF LT AA+++A YSGGM+RRLDIAMSL+G P +IFLDEPTTGLDPEARIE W VKEL Sbjct: 121 RFSLTGAANQRADQYSGGMKRRLDIAMSLIGAPAVIFLDEPTTGLDPEARIEVWDTVKEL 180 Query: 181 ADGGTTVFLTTQYLEEAEQLADRIAILHEGRIIASGTLAELKKLFPSAKVEYVEKQPTLE 240 A GGTT+ LTTQYLEEAEQLADRIAILH G+II +GTL ELK++FP AKVEY+EKQPTLE Sbjct: 181 AGGGTTILLTTQYLEEAEQLADRIAILHGGKIITTGTLTELKEMFPPAKVEYIEKQPTLE 240 Query: 241 EIFLAIIGKK 250 EIFLAIIGKK Sbjct: 241 EIFLAIIGKK 250 >ref|ZP_00098156.1| COG1131: ABC-type multidrug transport system, ATPase component [Desulfitobacterium hafniense] Length = 253 Score = 375 bits (964), Expect = e-103, Method: Compositional matrix adjust. Identities = 181/246 (73%), Positives = 216/246 (87%) Query: 4 KSIQVKGLQKSYRQLQVLKGVDFEVEKGSIFALLGSNGAGKTTVVKILSTLLKPDSGTVS 63 K+I+VKGL+KS++ +VLKGVDFEV +G IFALLG NGAGKTTVV ILSTLLK + GT S Sbjct: 3 KAIEVKGLRKSFKDTEVLKGVDFEVRRGEIFALLGPNGAGKTTVVNILSTLLKSEVGTAS 62 Query: 64 VNGFDVAAKPGDVRQSISLTGQFAAVDEILTGRENLIMIARLRHLDHPRQVADDLLRRFG 123 + GFDVA +PG VR++ISLTGQFAAVDEILTG EN+I+IA+LR + P QVA++LL+RFG Sbjct: 63 ICGFDVARQPGKVRENISLTGQFAAVDEILTGLENIILIAKLRGVPKPAQVAEELLKRFG 122 Query: 124 LTDAADRKASVYSGGMRRRLDIAMSLVGKPQLIFLDEPTTGLDPEARIEAWKIVKELADG 183 L++AA+++A YSGGM+RRLDIAMSLVGKP LIFLDEPTTGLDPE R+E WK +KELA Sbjct: 123 LSNAANKRADTYSGGMKRRLDIAMSLVGKPNLIFLDEPTTGLDPEGRLEVWKTIKELAGS 182 Query: 184 GTTVFLTTQYLEEAEQLADRIAILHEGRIIASGTLAELKKLFPSAKVEYVEKQPTLEEIF 243 G T+ LTTQYL+EAEQLAD+IAIL+EG+IIA+GTL ELKKLFP A+ EY+EKQPTLEEIF Sbjct: 183 GVTILLTTQYLDEAEQLADKIAILNEGKIIANGTLEELKKLFPPAQKEYIEKQPTLEEIF 242 Query: 244 LAIIGK 249 LAIIGK Sbjct: 243 LAIIGK 248 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.318 0.136 0.370 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 349,131,012 Number of extensions: 13782340 Number of successful extensions: 114515 Number of sequences better than 1.0e-05: 20455 Number of HSP's gapped: 92640 Number of HSP's successfully gapped: 21872 Length of query: 253 Length of database: 757,237,578 Length adjustment: 123 Effective length of query: 130 Effective length of database: 423,280,401 Effective search space: 55026452130 Effective search space used: 55026452130 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 124 (52.4 bits)