BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0337.0003.p (243 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_068928.1| nitrate ABC transporter, ATP-binding protein (n... 173 3e-42 ref|NP_905543.1| ABC transporter, ATP-binding protein [Porphyrom... 172 4e-42 gb|EAD57608.1| unknown [environmental sequence] 169 7e-41 dbj|BAA21795.1| malK-like protein [Synechococcus sp.] 166 6e-40 ref|NP_631589.1| putative ABC-transport protein, ATP-binding com... 162 6e-39 >ref|NP_068928.1| nitrate ABC transporter, ATP-binding protein (nrtC-1) [Archaeoglobus fulgidus DSM 4304] pir||G69260 nitrate ABC transporter, ATP-binding protein (nrtC-1) homolog - Archaeoglobus fulgidus gb|AAB91142.1| nitrate ABC transporter, ATP-binding protein (nrtC-1) [Archaeoglobus fulgidus DSM 4304] Length = 243 Score = 173 bits (439), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 97/234 (41%), Positives = 135/234 (57%), Gaps = 6/234 (2%) Query: 8 KALGQVDLTLPEHGIYTIIGPSGSGKSTLLRAVAGLLPDYGGELLFNGKSVHDQGTLIGL 67 KAL V + + IIGPSG GKSTLL +AGLL GE+L + ++V+ L Sbjct: 15 KALDGVSFEVEDGETCAIIGPSGCGKSTLLLIMAGLLKPSEGEVLVDDRAVNSPLKNAAL 74 Query: 68 VPQNYGLLPWKTVRDNIRVAMKITRPAGGNREAMEAEITHWLQSMGIAELAGRYPLSLSG 127 + Q++GL PWKTV DN+ + +KI G +R A +T L+ G+ YP LSG Sbjct: 75 ILQDFGLFPWKTVYDNVALGLKIR---GFSRRAERERVTALLEKFGLKGFEKSYPKQLSG 131 Query: 128 GQQQRVAIARAFAIQPAILLLDEPFSALDAITREALQQIFLDNWLTHPAAALFVTHDVEE 187 G +QRVAIARA AI+P ILL+DEP S+LDA++RE +Q L+ W + VTH +EE Sbjct: 132 GMKQRVAIARAIAIEPQILLMDEPLSSLDALSREEMQNFLLNLWKETKTTMVLVTHSIEE 191 Query: 188 AILLGQKIVVMPSAKEDTPEVLDNASVFAMKHAEKRDSDEFFEQSKRIRKVMLA 241 A+ LG+KIVV+ V+DN + R + FFE+ K +R+ + A Sbjct: 192 AVFLGRKIVVLTERPGRVKAVVDNREAGDESY---RYEEVFFERCKLLRQTIRA 242 >ref|NP_905543.1| ABC transporter, ATP-binding protein [Porphyromonas gingivalis W83] gb|AAQ66442.1| ABC transporter, ATP-binding protein [Porphyromonas gingivalis W83] Length = 232 Score = 172 bits (437), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 91/202 (45%), Positives = 131/202 (64%), Gaps = 10/202 (4%) Query: 1 VEYKSGQ---KALGQVDLTLPEHGIYTIIGPSGSGKSTLLRAVAGLLPDYGGELLFNGKS 57 V Y+ G KAL + L +P+ I+ I GPSG GKSTLL +AG+L +Y GE+LF+GK Sbjct: 9 VTYRHGSTEVKALDGLSLNIPKGEIFAITGPSGCGKSTLLHVLAGVLTEYEGEVLFDGKP 68 Query: 58 VHDQGTLIGLVPQNYGLLPWKTVRDNIRVAMKITRPAGGNREAMEA-EITHWLQSMGIAE 116 ++ + IG+VPQ YGLLPWK V +NI + P +EA+E E + ++G+++ Sbjct: 69 LNPKSFSIGIVPQQYGLLPWKRVHENIVL------PYTLRKEAIEMPEFESIVHTLGLSD 122 Query: 117 LAGRYPLSLSGGQQQRVAIARAFAIQPAILLLDEPFSALDAITREALQQIFLDNWLTHPA 176 + RYP LSGGQ+QRVA+AR F +P +LLLDE F+ALD +T E +Q+FL W H Sbjct: 123 ILHRYPKDLSGGQRQRVALARVFLQRPQLLLLDEAFAALDMLTAEKSRQLFLGLWDKHRV 182 Query: 177 AALFVTHDVEEAILLGQKIVVM 198 + VTH+VEEA+ + ++ V+ Sbjct: 183 TTVMVTHNVEEAVAMSSRVAVI 204 >gb|EAD57608.1| unknown [environmental sequence] Length = 231 Score = 169 bits (427), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 87/214 (40%), Positives = 126/214 (58%), Gaps = 4/214 (1%) Query: 22 IYTIIGPSGSGKSTLLRAVAGLLPDYGGELLFNGKSVHDQGTLIGLVPQNYGLLPWKTVR 81 I T++GPSG GKST + VAGL+ GE+L +GK V G G++ Q Y L PW TVR Sbjct: 10 IVTVVGPSGCGKSTAMNMVAGLMSQSSGEVLVDGKPVSRPGPDRGVIFQQYALFPWMTVR 69 Query: 82 DNIRVAMKITRPAGGNREAMEAEITHWLQSMGIAELAGRYPLSLSGGQQQRVAIARAFAI 141 +N+ +K+ + R H+L +G+A+ A YP +LSGG +QR AIARA+A+ Sbjct: 70 ENVEFGLKLQKLGKVERRQ---RAMHYLGLVGLADFADSYPKTLSGGMKQRCAIARAYAV 126 Query: 142 QPAILLLDEPFSALDAITREALQQIFLDNWLTHPAAALFVTHDVEEAILLGQKIVVMPSA 201 P +LL+DEPF ALDA+TR LQ L+ W +F+THDV+EA+ + +++V+ + Sbjct: 127 NPTVLLMDEPFGALDALTRVKLQNQLLETWSKDKRTVMFITHDVDEAVYIAHRVIVLAAN 186 Query: 202 KEDTPEVLDNASVFAMKHAEKRDSDEFFEQSKRI 235 E++D F + E R S EF E R+ Sbjct: 187 PGRLQEIIDVDLPFP-RDDEVRLSPEFAEIRNRV 219 >dbj|BAA21795.1| malK-like protein [Synechococcus sp.] Length = 289 Score = 166 bits (419), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 92/228 (40%), Positives = 137/228 (60%), Gaps = 2/228 (0%) Query: 9 ALGQVDLTLPEHGIYTIIGPSGSGKSTLLRAVAGLLPDYGGELLFNGKSVHDQGTLIGLV 68 AL V+LT+ + +IIGPSG GKSTLL +AGL G++L +G+ + G G+V Sbjct: 47 ALEDVNLTIASNTFVSIIGPSGCGKSTLLNLIAGLDLPTSGQILLDGQRIRSPGPDRGIV 106 Query: 69 PQNYGLLPWKTVRDNIRVAMKITRPAGGNREAMEAEITHWLQSMGIAELAGRYPLSLSGG 128 QNY L+PW T +N+ A++ RP +A E H L+ +G+ + A RYP +SGG Sbjct: 107 FQNYALMPWMTALENVIFAVETARPNLSKSQAREVAREH-LELVGLTKAADRYPGQISGG 165 Query: 129 QQQRVAIARAFAIQPAILLLDEPFSALDAITREALQQIFLDNWLTHPAAALFVTHDVEEA 188 +QRVAIARA +I+P +LL+DEPF ALDA+TR LQ+ L W + + + +TH ++EA Sbjct: 166 MKQRVAIARALSIRPKLLLMDEPFGALDALTRGYLQEEVLRIWEANKLSVVLITHSIDEA 225 Query: 189 ILLGQKIVVMPSAKEDT-PEVLDNASVFAMKHAEKRDSDEFFEQSKRI 235 +LL +IVVM T EV+D +V + + + + F + R+ Sbjct: 226 LLLSDRIVVMSRGPRATIREVIDLPAVRPRQRSVIEEDERFVKIKLRL 273 >ref|NP_631589.1| putative ABC-transport protein, ATP-binding component. [Streptomyces coelicolor A3(2)] emb|CAB90903.1| putative ABC-transport protein, ATP-binding component. [Streptomyces coelicolor A3(2)] Length = 270 Score = 162 bits (410), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 84/202 (41%), Positives = 117/202 (57%), Gaps = 3/202 (1%) Query: 9 ALGQVDLTLPEHGIYTIIGPSGSGKSTLLRAVAGLLPDYGGELLFNGKSVHDQGTLIGLV 68 AL V L + H T++GPSG GKSTL+ +AGL G L +G V G G++ Sbjct: 26 ALDDVSLDIANHEFVTVVGPSGCGKSTLMNILAGLEAPTSGRALVDGAPVSGPGPERGVI 85 Query: 69 PQNYGLLPWKTVRDNIRVAMKITRPAGGNREAMEAEITHWLQSMGIAELAGRYPLSLSGG 128 Q Y L PW TVR N+ ++ T G + A H+++ +G+ A P +LSGG Sbjct: 86 FQQYALFPWLTVRQNVEFGLRTT---GVPKRERRARAEHFIELVGLERFADALPKTLSGG 142 Query: 129 QQQRVAIARAFAIQPAILLLDEPFSALDAITREALQQIFLDNWLTHPAAALFVTHDVEEA 188 +QR AIARA+A+ P+ILL+DEPF ALDA+TR LQ+ L W LF+THDV+EA Sbjct: 143 MRQRCAIARAYAVDPSILLMDEPFGALDALTRVKLQEQLLKTWSQDRRTVLFITHDVDEA 202 Query: 189 ILLGQKIVVMPSAKEDTPEVLD 210 + L ++VVM + +V+D Sbjct: 203 VFLANRVVVMAARPGRVYDVVD 224 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.319 0.135 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 359,600,428 Number of extensions: 15091479 Number of successful extensions: 115162 Number of sequences better than 1.0e-05: 18760 Number of HSP's gapped: 92935 Number of HSP's successfully gapped: 19811 Length of query: 243 Length of database: 757,237,578 Length adjustment: 122 Effective length of query: 121 Effective length of database: 425,995,500 Effective search space: 51545455500 Effective search space used: 51545455500 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 124 (52.4 bits)