BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0336.0001.p (250 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value sp|P27675|GLNQ_BACST Glutamine transport ATP-binding protein gln... 359 3e-98 ref|NP_390620.1| glutamine ABC transporter (ATP-binding protein)... 350 1e-95 ref|NP_830455.1| Glutamine transport ATP-binding protein glnQ [B... 345 4e-94 ref|NP_977032.1| amino acid ABC transporter, ATP-binding protein... 338 4e-92 ref|NP_654583.1| ABC_tran, ABC transporter [Bacillus anthracis A... 338 8e-92 >sp|P27675|GLNQ_BACST Glutamine transport ATP-binding protein glnQ pir||A42478 glutamine transport protein glnQ - Bacillus stearothermophilus gb|AAA22483.1| membrane transport protein Length = 242 Score = 359 bits (922), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 169/242 (69%), Positives = 202/242 (83%) Query: 9 LIDFHQVEKHYGQFHVLKNIDLHXXXXXXXXXXXXXXXXKSTMLRCINRLETITSGGLTV 68 +I FHQV K+YG FHVLK+I+L KST++RCINRLETI+SG L V Sbjct: 1 MIYFHQVNKYYGDFHVLKDINLTIHQGEVVVIIGPSGSGKSTLVRCINRLETISSGELIV 60 Query: 69 DGITVNERKTDINKLRKEIGMVFQHFNLYPHKKVIDNITLAPVKVLGLTKAEAEKTAMYY 128 D + VN++ DIN+LR+ IGMVFQHFNLYPH V+ NITLAP+KVL + + EA++TAMYY Sbjct: 61 DNVKVNDKHIDINQLRRNIGMVFQHFNLYPHMTVLQNITLAPMKVLRIPEKEAKETAMYY 120 Query: 129 LEKVGIADKAQSYPSQLSGGQQQRVAIARGLAMKPKIMLFDEPTSALDPEMVGEVLDVMR 188 LEKVGI DKA +YPS+LSGGQQQRVAIARGLAMKPKIMLFDEPTSALDPE +GEVLDVM+ Sbjct: 121 LEKVGIPDKANAYPSELSGGQQQRVAIARGLAMKPKIMLFDEPTSALDPETIGEVLDVMK 180 Query: 189 NLAREGMTMVVVTHEMGFAREVADRVIFMDQGQIVEEAEPEQFFANPQEERTRTFLSRVL 248 LA+EGMTMVVVTHEMGFAREVADR++FMDQG+I+EEA PE+FF+NP+EER + FLSR+L Sbjct: 181 QLAKEGMTMVVVTHEMGFAREVADRIVFMDQGRILEEAPPEEFFSNPKEERAKVFLSRIL 240 Query: 249 SH 250 +H Sbjct: 241 NH 242 >ref|NP_390620.1| glutamine ABC transporter (ATP-binding protein) [Bacillus subtilis] pir||G69633 glutamine transport protein glnQ - Bacillus subtilis emb|CAB14684.1| glutamine ABC transporter (ATP-binding protein) [Bacillus subtilis subsp. subtilis str. 168] emb|CAA93317.1| ATP-binding subunit [Bacillus subtilis] Length = 242 Score = 350 bits (899), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 164/242 (67%), Positives = 198/242 (81%) Query: 9 LIDFHQVEKHYGQFHVLKNIDLHXXXXXXXXXXXXXXXXKSTMLRCINRLETITSGGLTV 68 +I F V KHYG FHVLK I+L KST+LRCINRLE+I G LTV Sbjct: 1 MITFQNVNKHYGDFHVLKQINLQIEKGEVVVIIGPSGSGKSTLLRCINRLESINEGVLTV 60 Query: 69 DGITVNERKTDINKLRKEIGMVFQHFNLYPHKKVIDNITLAPVKVLGLTKAEAEKTAMYY 128 +G +N+RKTDIN++R+ IGMVFQHF+LYPHK V+ NI LAPVKVL + +A++TA YY Sbjct: 61 NGTAINDRKTDINQVRQNIGMVFQHFHLYPHKTVLQNIMLAPVKVLRQSPEQAKETARYY 120 Query: 129 LEKVGIADKAQSYPSQLSGGQQQRVAIARGLAMKPKIMLFDEPTSALDPEMVGEVLDVMR 188 LEKVGI DKA +YPSQLSGGQQQRVAIARGLAMKP++MLFDEPTSALDPEM+GEVLDVM+ Sbjct: 121 LEKVGIPDKADAYPSQLSGGQQQRVAIARGLAMKPEVMLFDEPTSALDPEMIGEVLDVMK 180 Query: 189 NLAREGMTMVVVTHEMGFAREVADRVIFMDQGQIVEEAEPEQFFANPQEERTRTFLSRVL 248 LA+EGMTMVVVTHEMGFA+EVADR++F+D+G+I+EEA P +F+ANP+EER R FLSR+L Sbjct: 181 TLAKEGMTMVVVTHEMGFAKEVADRIVFIDEGKILEEAVPAEFYANPKEERARLFLSRIL 240 Query: 249 SH 250 +H Sbjct: 241 NH 242 >ref|NP_830455.1| Glutamine transport ATP-binding protein glnQ [Bacillus cereus ATCC 14579] gb|AAP07656.1| Glutamine transport ATP-binding protein glnQ [Bacillus cereus ATCC 14579] Length = 262 Score = 345 bits (886), Expect = 4e-94, Method: Compositional matrix adjust. Identities = 165/250 (66%), Positives = 197/250 (78%) Query: 1 MYGKGGLSLIDFHQVEKHYGQFHVLKNIDLHXXXXXXXXXXXXXXXXKSTMLRCINRLET 60 + G+GG LI+F V K+YG F VLK+I++ KST+LRCIN+LE+ Sbjct: 13 LLGEGGSMLIEFRNVNKYYGNFQVLKDINVQVKKGEVVVVVGPSGSGKSTLLRCINQLES 72 Query: 61 ITSGGLTVDGITVNERKTDINKLRKEIGMVFQHFNLYPHKKVIDNITLAPVKVLGLTKAE 120 IT G L V V+ KTD+N+LR+ IGMVFQHF LYPHK V+ NITLAP+KV ++K E Sbjct: 73 ITDGELIVQNTEVHNAKTDMNELRRNIGMVFQHFYLYPHKTVLQNITLAPIKVNKISKEE 132 Query: 121 AEKTAMYYLEKVGIADKAQSYPSQLSGGQQQRVAIARGLAMKPKIMLFDEPTSALDPEMV 180 AEKTAM+YLEKVGI +KA YP QLSGGQQQRVAIARGLAM+P+IMLFDEPTSALDPEM+ Sbjct: 133 AEKTAMFYLEKVGIPEKASVYPHQLSGGQQQRVAIARGLAMQPEIMLFDEPTSALDPEMI 192 Query: 181 GEVLDVMRNLAREGMTMVVVTHEMGFAREVADRVIFMDQGQIVEEAEPEQFFANPQEERT 240 GEVLDVM+ LA+EGMTMVVVTHEMGFAREVADR++FMD GQI+E+ P FFANP++ER Sbjct: 193 GEVLDVMKTLAKEGMTMVVVTHEMGFAREVADRILFMDDGQIIEDTTPANFFANPEQERA 252 Query: 241 RTFLSRVLSH 250 R FLSRVL+H Sbjct: 253 RLFLSRVLNH 262 >ref|NP_977032.1| amino acid ABC transporter, ATP-binding protein [Bacillus cereus ATCC 10987] gb|AAS39640.1| amino acid ABC transporter, ATP-binding protein [Bacillus cereus ATCC 10987] Length = 298 Score = 338 bits (868), Expect = 4e-92, Method: Compositional matrix adjust. Identities = 162/250 (64%), Positives = 197/250 (78%) Query: 1 MYGKGGLSLIDFHQVEKHYGQFHVLKNIDLHXXXXXXXXXXXXXXXXKSTMLRCINRLET 60 + G+G LI+F V K+YG F VLK+I++ KST+LRCIN+LE+ Sbjct: 49 LLGEGVSMLIEFRNVNKYYGTFQVLKDINVQVKKGEVVVVVGPSGSGKSTLLRCINQLES 108 Query: 61 ITSGGLTVDGITVNERKTDINKLRKEIGMVFQHFNLYPHKKVIDNITLAPVKVLGLTKAE 120 IT G L V V+ KTD+N+LR+ IGMVFQHF LYPHK V+ NITLAP+KV ++K E Sbjct: 109 ITDGELIVQNTEVHNAKTDMNELRRNIGMVFQHFYLYPHKTVLQNITLAPIKVNKISKEE 168 Query: 121 AEKTAMYYLEKVGIADKAQSYPSQLSGGQQQRVAIARGLAMKPKIMLFDEPTSALDPEMV 180 AE+TAM+YLEKVGI +KA YP QLSGGQQQRVAIARGLAM+P+IMLFDEPTSALDPEM+ Sbjct: 169 AEQTAMFYLEKVGIPEKANVYPHQLSGGQQQRVAIARGLAMQPEIMLFDEPTSALDPEMI 228 Query: 181 GEVLDVMRNLAREGMTMVVVTHEMGFAREVADRVIFMDQGQIVEEAEPEQFFANPQEERT 240 GEVLDVM+ LA+EGMTMVVVTHEMGFAREVADR++FMD G+I+E+ P QFFA+P++ER Sbjct: 229 GEVLDVMKTLAKEGMTMVVVTHEMGFAREVADRILFMDDGKIIEDTTPAQFFASPEQERA 288 Query: 241 RTFLSRVLSH 250 R FLSRVL+H Sbjct: 289 RLFLSRVLNH 298 >ref|NP_654583.1| ABC_tran, ABC transporter [Bacillus anthracis A2012] ref|NP_843170.1| amino acid ABC transporter, ATP-binding protein [Bacillus anthracis str. Ames] gb|AAP24656.1| amino acid ABC transporter, ATP-binding protein [Bacillus anthracis str. Ames] Length = 243 Score = 338 bits (866), Expect = 8e-92, Method: Compositional matrix adjust. Identities = 161/242 (66%), Positives = 193/242 (79%) Query: 9 LIDFHQVEKHYGQFHVLKNIDLHXXXXXXXXXXXXXXXXKSTMLRCINRLETITSGGLTV 68 LI+F V K+YG F VLK+I++ KST+LRCIN+LE+IT G L V Sbjct: 2 LIEFRNVNKYYGNFQVLKDINVQVKKGEVVVVVGPSGSGKSTLLRCINQLESITDGELIV 61 Query: 69 DGITVNERKTDINKLRKEIGMVFQHFNLYPHKKVIDNITLAPVKVLGLTKAEAEKTAMYY 128 V+ KTD+N+LR+ IGMVFQHF LYPHK V+ NITLAP+KV ++K EAEKTAM+Y Sbjct: 62 QNTEVHNAKTDMNELRRNIGMVFQHFYLYPHKTVLQNITLAPIKVNKISKEEAEKTAMFY 121 Query: 129 LEKVGIADKAQSYPSQLSGGQQQRVAIARGLAMKPKIMLFDEPTSALDPEMVGEVLDVMR 188 LEKVGI +KA YP QLSGGQQQRVAIARGLAM+P+IMLFDEPTSALDPEM+GEVLDVM+ Sbjct: 122 LEKVGIPEKANVYPHQLSGGQQQRVAIARGLAMQPEIMLFDEPTSALDPEMIGEVLDVMK 181 Query: 189 NLAREGMTMVVVTHEMGFAREVADRVIFMDQGQIVEEAEPEQFFANPQEERTRTFLSRVL 248 LA+EGMTMVVVTHEMGFAREVADR++FMD G+I+E+ P QFFA+P++ER R FLSRVL Sbjct: 182 TLAKEGMTMVVVTHEMGFAREVADRILFMDDGKIIEDTTPAQFFASPEQERARLFLSRVL 241 Query: 249 SH 250 +H Sbjct: 242 NH 243 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.320 0.136 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 314,783,960 Number of extensions: 10757325 Number of successful extensions: 85353 Number of sequences better than 1.0e-05: 20072 Number of HSP's gapped: 65293 Number of HSP's successfully gapped: 21250 Length of query: 250 Length of database: 757,237,578 Length adjustment: 123 Effective length of query: 127 Effective length of database: 423,280,401 Effective search space: 53756610927 Effective search space used: 53756610927 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 124 (52.4 bits)