BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0335.0016.p (664 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00059983.1| COG0643: Chemotaxis protein histidine kinase ... 443 e-123 ref|NP_623035.1| Chemotaxis protein histidine kinase and related... 426 e-117 ref|NP_243836.1| two-component sensor histidine kinase involved ... 424 e-117 ref|ZP_00061846.1| COG0643: Chemotaxis protein histidine kinase ... 423 e-117 ref|ZP_00183583.1| hypothetical protein Exigu101501 [Exiguobacte... 418 e-115 >ref|ZP_00059983.1| COG0643: Chemotaxis protein histidine kinase and related kinases [Clostridium thermocellum ATCC 27405] Length = 692 Score = 443 bits (1140), Expect = e-123, Method: Compositional matrix adjust. Identities = 260/705 (36%), Positives = 414/705 (58%), Gaps = 60/705 (8%) Query: 2 MELSAYRDIFIEELNDQLERMDQSLLALEQSPS-AELIQTIFRAAHTIKGSSSTMGFKEM 60 M++S Y +IFI+E + L+ ++QSLL LEQ+P ++ IFR AHT+KG S TMGF +M Sbjct: 1 MDMSQYLEIFIDETKEHLQSLNQSLLELEQNPDDTSVLNEIFRVAHTLKGMSGTMGFTKM 60 Query: 61 SDLTHEVEFILEWVREKKPEITSVLIDTLFRALDAMK-----LLRTEYISGSEYTNCSSV 115 + LTH++E +L+ +R + + TS L+D LF+ LDA++ ++ T +EY + Sbjct: 61 AKLTHDMENVLQALRNNQIKATSKLVDLLFKCLDALENYTDNIVNTGNEGSNEYNDIIKE 120 Query: 116 VSEI------------KALLGKP------AEPERNRLPLPVXXXXXXXXXXXXVG--AGE 155 +++I +L GK E N+ P Sbjct: 121 LNDIVQTKSSDGGQQKSSLSGKKVSDLDGTSKEENQHPTAAIKLNQYELNVAAKAREMNM 180 Query: 156 QLIAVSITLKEDCLMKAARHFILLQRMEAVCGTVIAVSLFPASAPGTD--EDDRYG-RFT 212 + +++ L + C++K+AR FI+ Q +E G +I S P + ED+++ FT Sbjct: 181 NVFKITVVLNKGCVLKSARAFIIFQTLER-HGEII------RSEPKVEDIEDEKFDFEFT 233 Query: 213 VVAATMKEQQQIQDQLGDDSDIQSLDIAPFKLKQSK----------EAEKIE------HA 256 VV T + ++ + +++ + + P + + K E E ++ H Sbjct: 234 VVCVTKENEEVFIKDINGIAEVDEVIVVPIDIPELKTSTVQNDDNYERENVQTGGEEVHV 293 Query: 257 PEASTQQGNPKAEERGKGMHPTVRVNVERLDHLMNLVGELLIEQTSLADLSAAGQRSDPA 316 E + + N ++ TVRV+++RLD LMN V EL+I +T LA LS SD A Sbjct: 294 QEEKS-ESNTSSQVHKTKTGKTVRVDIDRLDVLMNFVSELIIIKTRLAGLSG----SDNA 348 Query: 317 RVLPDISSVSDHMGSIIKELQDGVMKTRMLPIDQLFSRFPRLVRDLAQKLDKDIELVIQG 376 + + +++ I L D VMK RM+P++ +F+RFPR++RD+A++L K+I+L + G Sbjct: 349 QTY---NETIEYLDRITTSLNDAVMKVRMVPVEMVFNRFPRMIRDIARELGKEIQLNMSG 405 Query: 377 GETELDRMIIEELSDPLIHLIRNSADHGIESPGVRISEGKPAKGRITLTSFHEENHVVIR 436 ETELDR +I+E+ DPLIHL+RNSADHGIE R++ GKPA G I L ++ + ++VVI Sbjct: 406 VETELDRTVIDEIGDPLIHLLRNSADHGIEPKEKRLAMGKPAVGHINLRAYQDGDNVVIE 465 Query: 437 LEDDGQGIDASKIKASALGKGIITEEQAGYLTAQEAVHLIFEPGFSTASAVSEVSGRGVG 496 +EDDGQGID K+K A+ KG++ +E L+ ++ + +F+P FST+ ++ +SGRGVG Sbjct: 466 VEDDGQGIDVEKVKKKAVEKGLVKKEIVNTLSQKDIIDFLFKPSFSTSDNITNISGRGVG 525 Query: 497 MDIVRSQIGRLNGIIDIETEPGKGTVFTIRLPLTLAIIKGLLVKVAGRVLILPMYNVAEI 556 +D+V+++I +L G++++ETE GKG+ F IRLPLTLAII+ LLV V +P+ + EI Sbjct: 526 LDVVKTKIEQLGGVVEVETEAGKGSKFIIRLPLTLAIIQALLVMVGNEKYAIPLSSTKEI 585 Query: 557 VRIAPEEIQVVQGEQAIINHGRIVPLSWLRDKLHYPRAERSTRTIPLVIVRSVDKIAAFA 616 +++ PE+I+ VQ ++ I+ +VP+ L L P ER + + +VIV+ +K++ F Sbjct: 586 IKVTPEQIKTVQKQEVILLRNMVVPIVRLDKILEVPPVERKKKDMTVVIVKKGEKLSGFL 645 Query: 617 VDEIIGNQEVVIKSLGAYLGTLNHLSGATILGNGRVALILDAAYL 661 VD +IG QE+VIKSLG L + ++GATILG+G VALILD L Sbjct: 646 VDSLIGQQEIVIKSLGKLLSNIKGIAGATILGDGNVALILDVNLL 690 >ref|NP_623035.1| Chemotaxis protein histidine kinase and related kinases [Thermoanaerobacter tengcongensis] gb|AAM24639.1| Chemotaxis protein histidine kinase and related kinases [Thermoanaerobacter tengcongensis] Length = 646 Score = 426 bits (1094), Expect = e-117, Method: Compositional matrix adjust. Identities = 253/669 (37%), Positives = 413/669 (61%), Gaps = 33/669 (4%) Query: 2 MELSAYRDIFIEELNDQLERMDQSLLALEQSPSAE-LIQTIFRAAHTIKGSSSTMGFKEM 60 ME + Y +IFIEE + +E ++ +LL LE+ P + +I IFR+AHT+KG ++TMGF+ M Sbjct: 1 METNQYIEIFIEESQEHIENLNSNLLLLEKDPQNKGVIDEIFRSAHTLKGMAATMGFENM 60 Query: 61 SDLTHEVEFILEWVREKKPEITSVLIDTLFRALDAM-KLLRTEYISGSEYTNCSSVVSEI 119 + L H++E +L+ V+ K ITS ++D LF+++D + ++L + +G ++ V+ + Sbjct: 61 NKLAHKMEDVLQEVKNGKLSITSSIMDILFKSVDVLGEMLNSISQTGEDFP-ADDVIFLL 119 Query: 120 KALLGKPAEPERNRLPLPVXXXXXXXXXXXXVGAGEQLIAVSITLKED--CLMKAARHFI 177 + P E+ E A IT+ D C+MK+AR F+ Sbjct: 120 SGIKKMPGNEEKAITYSGSLSINEYEEDIIREAYKENYKAFKITVHIDKGCMMKSARAFV 179 Query: 178 LLQRMEAVCGTVIAVSLFPASAPGTDEDDRYGRFTVVAATMKEQQQIQDQLG-----DDS 232 + ++ + G +I + FP DE Y FT+ T +E++++++ L + Sbjct: 180 IFNNLDKM-GDII--NSFPPVEDIEDEKFDYS-FTLHFLTKEEKEKLEEMLLAIPEVERV 235 Query: 233 DIQSLDIAPFKLKQSKEAEKIEHAPEASTQQGNPKAEERGKGMHPTVRVNVERLDHLMNL 292 +I+ +++ P K +++++ + +E A + +Q K+ VRV+++RLD+LMNL Sbjct: 236 EIEEINVTPSK-EETEDTQILEAAKKTISQNKTSKS----------VRVDIDRLDNLMNL 284 Query: 293 VGELLIEQTSLADLSAAGQRSDPARVLPDISSVSDHMGSIIKELQDGVMKTRMLPIDQLF 352 V EL+I +T L L A + P+ ++ +++ I L D VMK RM+P++++F Sbjct: 285 VSELIIIKTRLEGLEADNKN-------PETANAIEYLERITTSLHDAVMKVRMVPVERVF 337 Query: 353 SRFPRLVRDLAQKLDKDIELVIQGGETELDRMIIEELSDPLIHLIRNSADHGIESPGVRI 412 +RFPR+VRDL+ +L K I L + G ETE+DR +I+E+ DPL+HLIRNS DHGIE P RI Sbjct: 338 NRFPRMVRDLSHELGKKITLNMYGQETEVDRTVIDEIGDPLVHLIRNSIDHGIEPPEERI 397 Query: 413 SEGKPAKGRITLTSFHEENHVVIRLEDDGQGIDASKIKASALGKGIITEEQAGYLTAQEA 472 +GKP G I L ++HE N+V+I + DDG+GID K+K A+ +G+ T+EQ L+ + Sbjct: 398 KKGKPEVGTINLKAYHEGNNVIIEVSDDGRGIDIEKVKEKAIERGLYTQEQIASLSKDKI 457 Query: 473 VHLIFEPGFSTASAVSEVSGRGVGMDIVRSQIGRLNGIIDIETEPGKGTVFTIRLPLTLA 532 ++F+PGFSTA V+++SGRGVG+D+V+++I LNG I++ +EP KGT F I+LPLTLA Sbjct: 458 FEILFKPGFSTADKVTDISGRGVGLDVVKNKIESLNGTIEVFSEPDKGTKFVIKLPLTLA 517 Query: 533 IIKGLLVKVAGRVLILPMYNVAEIVRIAPEEIQVVQGEQAIINHGRIVPLSWLRDKLHYP 592 II+ LLVKV +P+ +++EIV +E++ VQG++ ++ GR++P+ L + L Sbjct: 518 IIQALLVKVGDEKFAIPLNSISEIVHKKEDEVRNVQGKEIVLYRGRVIPIIRLNEILQTK 577 Query: 593 RAERSTRTIPLVIVRSVDKIAAFAVDEIIGNQEVVIKSLGAYLGTLNHLSGATILGNGRV 652 + E + I VI++ + +A VD++IG QE+VIK LG YL + ++GATILG+G+V Sbjct: 578 KVESNGNLI-CVIIKKGENLACCTVDDLIGQQEIVIKPLGKYLSNVKVIAGATILGDGQV 636 Query: 653 ALILDAAYL 661 ALI+DA L Sbjct: 637 ALIVDANNL 645 >ref|NP_243836.1| two-component sensor histidine kinase involved in chemotaxis [Bacillus halodurans] pir||B84021 two-component sensor histidine kinase involved in chemotaxis cheA [imported] - Bacillus halodurans (strain C-125) dbj|BAB06689.1| two-component sensor histidine kinase involved in chemotaxis [Bacillus halodurans] Length = 682 Score = 424 bits (1089), Expect = e-117, Method: Compositional matrix adjust. Identities = 248/693 (35%), Positives = 403/693 (58%), Gaps = 44/693 (6%) Query: 2 MELSAYRDIFIEELNDQLERMDQSLLALEQSPS-AELIQTIFRAAHTIKGSSSTMGFKEM 60 M S Y ++FI+E + L+ ++ +LL LE SPS ++ IFR+AHT+KG ++TMGF+++ Sbjct: 1 MSHSEYLEVFIDESQEHLQAINDNLLKLEVSPSDLSIVGEIFRSAHTLKGMAATMGFEDL 60 Query: 61 SDLTHEVEFILEWVREKKPEITSVLIDTLFRALDAMKLLRTEYISGSEYTNCSSVVSEIK 120 + LTH +E +L+ +R +K + TS ++D +F A+D ++ + + SG + + V + Sbjct: 61 AHLTHNMENVLDLIRNQKLDATSEVLDVVFEAVDDLEAMVGDIASGGDGKRDVTKVVVML 120 Query: 121 ALLGKPAEPERNR---LPLPVX--------------XXXXXXXXXXXVGAGEQLIAVSIT 163 + K P+ + P P G Q + +T Sbjct: 121 EQIEKGETPDAGKAVHTPSPAAGQLELSGSSIIESYDEFEMTVLDQSFEQGYQAYQIEVT 180 Query: 164 LKEDCLMKAARHFILLQRMEAVCGTVIAVSLFPASAPGTDEDDRYGRFTVVAATMKEQQQ 223 L E L+KAAR F++ + +E V G VI + SA +E+ RF V T + ++ Sbjct: 181 LDEKTLLKAARVFMVFEVLEQV-GEVIKST---PSAEELEEEKFDERFLVTLLTKVDGEE 236 Query: 224 IQDQLGDDSDIQSLDIAPFK------LKQSK--------EAEKIEHAPEASTQQGNPKAE 269 ++ ++ S+I ++DI LK+++ + EK E E T P ++ Sbjct: 237 VRQRILKVSEITAVDICSLDKQALQALKETQHTQSDKQVDVEKAEEQTEKKTATTTP-SD 295 Query: 270 ERGKGMHPTVRVNVERLDHLMNLVGELLIEQTSLADLSAAGQRSDPARVLPDISSVSDHM 329 ++G ++ TVRVN+ERLD LMNL EL+I++ L +++ +++ ++ + M Sbjct: 296 KKGVEVNKTVRVNIERLDVLMNLFEELVIDRGRLEQIASELNQNE-------LNETVERM 348 Query: 330 GSIIKELQDGVMKTRMLPIDQLFSRFPRLVRDLAQKLDKDIELVIQGGETELDRMIIEEL 389 I +LQ+ ++ RM+P++Q+F+RFPR+VR L+++L+K + L I G ETELDR II+E+ Sbjct: 349 SRISGDLQEIILNMRMMPVEQVFNRFPRMVRSLSKELNKKVNLEIVGAETELDRTIIDEI 408 Query: 390 SDPLIHLIRNSADHGIESPGVRISEGKPAKGRITLTSFHEENHVVIRLEDDGQGIDASKI 449 DPL+HLIRNS DHGIE+P VR + GKP +G + L +FH N+V I +EDDG GID K+ Sbjct: 409 GDPLVHLIRNSIDHGIETPEVRRAAGKPEEGTVILRAFHSGNNVFIEIEDDGAGIDRDKV 468 Query: 450 KASALGKGIITEEQAGYLTAQEAVHLIFEPGFSTASAVSEVSGRGVGMDIVRSQIGRLNG 509 AL G++TEE A + + L+F PGFSTA ++++SGRGVG+D+V+S + G Sbjct: 469 LQKALTNGVVTEEDAAKMNDSQVFQLLFAPGFSTAEKITDISGRGVGLDVVQSTFESIGG 528 Query: 510 IIDIETEPGKGTVFTIRLPLTLAIIKGLLVKVAGRVLILPMYNVAEIVRIAPEEIQVVQG 569 ++ + ++ GKG++F+I+LPLTL+II +LV+VA +P+ ++ E + E+ Sbjct: 529 VVSVTSKLGKGSLFSIQLPLTLSIIDVMLVEVADEKYAIPLSSIVETAIVNKNEVYSAHN 588 Query: 570 EQAIINHGRIVPLSWLRDKLHYPRAERSTRTIPLVIVRSVDKIAAFAVDEIIGNQEVVIK 629 ++ I G++VPL +L D P + LVIV +K+A VD +IG ++V+K Sbjct: 589 QKVIDFRGKVVPLVFLSDIFAVPEKREADELYSLVIVHKGEKVAGLVVDSLIGQHDIVLK 648 Query: 630 SLGAYLGTLNHLSGATILGNGRVALILDAAYLV 662 SLG YL + +SGATILGNG+VALI+D L+ Sbjct: 649 SLGDYLTDVFAISGATILGNGQVALIVDTNALI 681 >ref|ZP_00061846.1| COG0643: Chemotaxis protein histidine kinase and related kinases [Clostridium thermocellum ATCC 27405] Length = 621 Score = 423 bits (1087), Expect = e-117, Method: Compositional matrix adjust. Identities = 239/609 (39%), Positives = 367/609 (60%), Gaps = 40/609 (6%) Query: 80 EITSVLIDTLFRALDAMKLLRTEYISGSEY--TNCSSVVSEIKAL--------------L 123 EI+ +ID LF LD + +L+ +++S S T + V++++K + Sbjct: 3 EISRPVIDVLFECLDCLNMLKEDFVSDSNNVKTEITPVITKLKEISSENETNNQNSDSDK 62 Query: 124 GKPAEPERNRLPLPVXXXXXXXXXXXXVGAGEQLIAVSITLKEDCLMKAARHFILLQRME 183 + E R P+ V +G G+ ++ + + ED MK+ R +++ + Sbjct: 63 AENLETGRREQPIFVLDEKQQEQINQALGIGQNVLVCEVEILEDSQMKSVRACLIMNFLN 122 Query: 184 AVCGTVIAVSLFPASAPGTDE---DDRYGRFTVVAATMKEQQQIQDQLGDD-SDIQSLDI 239 GTVI + P E D G+ + T +++ ++ +D DI+ + + Sbjct: 123 E-WGTVINM------VPNVMEIPIDSDVGKVAFLVVTQMSADELRQKVQNDLMDIKEVRV 175 Query: 240 APF----KLKQSKEAEKIEHAPEASTQQGNPKAEERGKGMHPTVRVNVERLDHLMNLVGE 295 P+ + Q+K+ E + G A E + +H TVR++V+RL+ +M+LVGE Sbjct: 176 FPYFIQNSISQTKDGET--GVRDKDNSSGVKTATEEKRVVH-TVRIDVDRLERMMDLVGE 232 Query: 296 LLIEQTSLADLSAAGQRSDPA-RVLPDISSVSDHMGSIIKELQDGVMKTRMLPIDQLFSR 354 L+IEQ +A ++ P+ + D+ +S+ + +I ELQ+G+MKTRM+P+ QLFSR Sbjct: 233 LVIEQIRIAQVANNLYNQYPSDETVDDLIGISNRVSILINELQEGIMKTRMIPVQQLFSR 292 Query: 355 FPRLVRDLAQKLDKDIELVIQGGETELDRMIIEELSDPLIHLIRNSADHGIESPGVRISE 414 FPR+VRDL+ L+K++ LV++GGETE+DR I+EE+SDPLIHLIRN+ DHGIE+P +R Sbjct: 293 FPRMVRDLSVSLNKEVNLVLEGGETEIDRTIMEEMSDPLIHLIRNAIDHGIENPEIRKKL 352 Query: 415 GKPAKGRITLTSFHEENHVVIRLEDDGQGIDASKIKASALGKGIITEEQAGYLTAQEAVH 474 GKP +G + +T+ E+++V+I +EDDG GID +IK SA+ K I+TE++A +T Q+ ++ Sbjct: 353 GKPEQGTLRVTALPEDSNVIITVEDDGAGIDPQEIKQSAIKKRIVTEQEANNMTEQQLIN 412 Query: 475 LIFEPGFSTASAVSEVSGRGVGMDIVRSQIGRLNGIIDIETEPGKGTVFT----IRLPLT 530 LIF+ GFST+ VS+VSGRGVGMDIV++ I +LNGIID+ET G GT F I+LPLT Sbjct: 413 LIFQTGFSTSQKVSDVSGRGVGMDIVKTHIEKLNGIIDVETCAGSGTKFIIKLPIKLPLT 472 Query: 531 LAIIKGLLVKVAGRVLILPMYNVAEIVRIAPEEIQVVQGEQAIINHGRIVPLSWLRDKLH 590 LAI+KGLLVK++ LPM NV EIVR EI+ + G+ + R +PL WL D Sbjct: 473 LAILKGLLVKISNETYALPMNNVVEIVRKPKNEIESINGQAVAVIRDRAIPLIWLHDYFG 532 Query: 591 YPRAERSTRTIPLVIVRSVDKIAAFAVDEIIGNQEVVIKSLGAYLGTLNHLSGATILGNG 650 PR T+ +V++ +K VDE+IGNQE+V+ +LG+Y+G + +SGATILG+ Sbjct: 533 IPRGNERKNTL-IVLLGIAEKRFGLVVDELIGNQEIVVTNLGSYIGKVEGISGATILGDR 591 Query: 651 RVALILDAA 659 VA ILD Sbjct: 592 SVACILDVV 600 >ref|ZP_00183583.1| hypothetical protein Exigu101501 [Exiguobacterium sp. 255-15] Length = 663 Score = 418 bits (1075), Expect = e-115, Method: Compositional matrix adjust. Identities = 255/685 (37%), Positives = 395/685 (57%), Gaps = 48/685 (7%) Query: 2 MELSAYRDIFIEELNDQLERMDQSLLALEQSPSAE-LIQTIFRAAHTIKGSSSTMGFKEM 60 M+L+ Y +F++E + L+ ++ SLL EQ E +I IFR+AHT+KG S TMG+ + Sbjct: 1 MDLNEYLGLFLDESIEHLQAINSSLLIFEQRLDDEAVIDQIFRSAHTLKGMSGTMGYDAI 60 Query: 61 SDLTHEVEFILEWVREKKPEITSVLIDTLFRALDAMKLLRTEYIS--GSEYTNCSSVVSE 118 +DLTHE+E L+ VR K T LID LF A + ++ + E IS G+ + ++ V Sbjct: 61 ADLTHEMESALDLVRSKTQPATPELIDVLFVAAEQLETM-VEDISQGGTGKLDVTTTVIR 119 Query: 119 IKALLGKPAEPERNRLPLPVXXXX-------XXXXXXXXVGAGEQLIAVSITLKEDCLMK 171 +K + E ++ + + +G Q +++ L D ++K Sbjct: 120 LKQFIDPDTESGKDTVKAAGTVMMNFECDVYSESVVRQSMASGYQAYVITVELSADVILK 179 Query: 172 AARHFILLQRMEAVCGTVIAVSLFPASAPGTDE---DDRYGRFTVVAATMKEQQQIQDQL 228 AAR +++ R++ + ++ S P +DE + RF V+ TMK + IQ ++ Sbjct: 180 AARVYMVFDRLQNLGDVIL-------SNPTSDELEQEQFETRFDVLFVTMKTAEDIQQEI 232 Query: 229 GDDSDIQSLDIAPFKLKQSKEA-----EKIEHAP------EASTQQGNPKAEERGKGMHP 277 S++ + I PF++ A E +E P E ST+ P A + Sbjct: 233 KAVSEVAQVLIQPFEVSVEPAAAATLLEPVEETPAVNTSIETSTETQTPIAAK------- 285 Query: 278 TVRVNVERLDHLMNLVGELLIEQTSLADLSAAGQRSDPARVLPDISSVSDHMGSIIKELQ 337 T+RVN+ER+D LMNL E +I++ L ++A SD + I ++ ELQ Sbjct: 286 TIRVNLERIDRLMNLFEEFIIDRGRLERIAAEVGSSDLTETVERIKRGTN-------ELQ 338 Query: 338 DGVMKTRMLPIDQLFSRFPRLVRDLAQKLDKDIELVIQGGETELDRMIIEELSDPLIHLI 397 V+ RM+PI+Q+F+RFPR+VR +++ + K+I+L I G ETELDR +I+E+ DPL+HLI Sbjct: 339 SLVLTLRMMPIEQVFNRFPRMVRSVSKDVGKNIKLHITGAETELDRTVIDEIGDPLVHLI 398 Query: 398 RNSADHGIESPGVRISEGKPAKGRITLTSFHEENHVVIRLEDDGQGIDASKIKASALGKG 457 RN+ DHGIES RIS GKP +G ++L ++H N V I +EDDG GI+ ++ AL KG Sbjct: 399 RNAVDHGIESKADRISAGKPVEGNLSLRAYHSGNRVFIEIEDDGAGINQERVTKIALEKG 458 Query: 458 IITEEQAGYLTAQEAVHLIFEPGFSTASAVSEVSGRGVGMDIVRSQIGRLNGIIDIETEP 517 ++TEE+A LT +EA L+F PGFSTA V+++SGRGVG+D+V+S+I L G + +ET+ Sbjct: 459 LLTEEEATLLTPEEAAMLLFAPGFSTAETVTDLSGRGVGLDVVKSKIESLGGEVFVETKR 518 Query: 518 GKGTVFTIRLPLTLAIIKGLLVKVAGRVLILPMYNVAEIVRIAPEEIQVVQGEQAIINHG 577 G+GT+F I LPLTL+II +LVK+ +P+ + E + + I E+ G Sbjct: 519 GEGTIFRISLPLTLSIISAMLVKLDQETYAIPLTAIIETTSLKQDVILQAHREKVFDFRG 578 Query: 578 RIVPLSWLRDKLHYPRAERSTRTIPLVIVRSVDKIAAFAVDEIIGNQEVVIKSLGAYLGT 637 ++VPL L P E ++ V+VRS +K+A V E+IG QE+V+K LG+YL Sbjct: 579 QLVPLISLNQVYGLPHVEADAYSV--VVVRSGEKLAGLMVSELIGQQEIVMKPLGSYLEG 636 Query: 638 LNHLSGATILGNGRVALILDAAYLV 662 + +SGATILG+G+VALI+D+ L+ Sbjct: 637 IRAISGATILGDGQVALIIDSNALL 661 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.318 0.135 0.372 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 881,940,741 Number of extensions: 34998046 Number of successful extensions: 108590 Number of sequences better than 1.0e-05: 348 Number of HSP's gapped: 108116 Number of HSP's successfully gapped: 480 Length of query: 664 Length of database: 757,237,578 Length adjustment: 132 Effective length of query: 532 Effective length of database: 398,844,510 Effective search space: 212185279320 Effective search space used: 212185279320 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)