BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0335.0007.p (260 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_844857.1| ABC transporter, ATP-binding protein [Bacillus ... 244 2e-63 ref|NP_978822.1| ABC transporter, ATP-binding protein [Bacillus ... 238 7e-62 ref|NP_656337.1| ABC_tran, ABC transporter [Bacillus anthracis A... 185 9e-46 ref|NP_243565.1| ABC transporter (ATP-binding protein) [Bacillus... 176 5e-43 ref|NP_981181.1| ABC transporter, ATP-binding protein [Bacillus ... 173 4e-42 >ref|NP_844857.1| ABC transporter, ATP-binding protein [Bacillus anthracis str. Ames] gb|AAP26343.1| ABC transporter, ATP-binding protein [Bacillus anthracis str. Ames] Length = 256 Score = 244 bits (622), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 123/229 (53%), Positives = 160/229 (69%), Gaps = 2/229 (0%) Query: 9 ILEASGLHKVYD-NGQSNPQPVLRNIKLQIQQGEFVAVMGPSGSGKSTLLYTVSGMDPIT 67 ILE ++K Y +G +N VL+NI L++ +GEFV+VMGPSGSGKSTLLY +SGMD ++ Sbjct: 7 ILEVKQVNKTYSMDGNANYH-VLKNIDLEVYEGEFVSVMGPSGSGKSTLLYNISGMDQMS 65 Query: 68 TGSVAFXXXXXXXXXXXXXXXIRLNEMGFIFQQMHLLKNLNIRDNILLPAYRAGQISRRS 127 +GSV +RL E+GFIFQQ +LL+NLN+ DNI+L AY A S++ Sbjct: 66 SGSVKIDSKELSCMKEEELAKLRLTEIGFIFQQSNLLRNLNLFDNIILSAYLAKCESKKI 125 Query: 128 INKSAAELMRLTGISALAERNITQVSGGQMQRAAICRALINEPVMLFGDEPTGALNSQAA 187 +NK A ELM GIS +A IT+ SGGQ+QR +ICRALIN P ++F DEPTGALN ++ Sbjct: 126 VNKRALELMENMGISDIASHYITEASGGQLQRVSICRALINNPNIIFADEPTGALNLKST 185 Query: 188 TEIMGILAEINQSGTTILLATHDPRVAAKAERVLYMLDGNMASEQWLGK 236 E+M IL IN+ GTTI+L THD +VAAK ER+L+M DG + SE LGK Sbjct: 186 EEVMQILLNINRDGTTIMLVTHDVKVAAKTERILFMADGEIVSEIQLGK 234 >ref|NP_978822.1| ABC transporter, ATP-binding protein [Bacillus cereus ATCC 10987] gb|AAS41430.1| ABC transporter, ATP-binding protein [Bacillus cereus ATCC 10987] Length = 253 Score = 238 bits (608), Expect = 7e-62, Method: Compositional matrix adjust. Identities = 122/229 (53%), Positives = 159/229 (69%), Gaps = 2/229 (0%) Query: 9 ILEASGLHKVYD-NGQSNPQPVLRNIKLQIQQGEFVAVMGPSGSGKSTLLYTVSGMDPIT 67 I+E ++K Y +G +N VL+NI L++ +GEFV+VMGPSGSGKSTLLY +SGMD ++ Sbjct: 4 IVEVKQVNKTYSIDGNANYH-VLKNIDLEVYEGEFVSVMGPSGSGKSTLLYNISGMDQMS 62 Query: 68 TGSVAFXXXXXXXXXXXXXXXIRLNEMGFIFQQMHLLKNLNIRDNILLPAYRAGQISRRS 127 +GSV +RL E+GFIFQQ +LL+NLN+ DNI+L AY A S++ Sbjct: 63 SGSVKIGGKEISCMKEEALAKLRLTEIGFIFQQSNLLRNLNLFDNIILSAYLAKCESKKI 122 Query: 128 INKSAAELMRLTGISALAERNITQVSGGQMQRAAICRALINEPVMLFGDEPTGALNSQAA 187 +NK A LM GIS +A IT+ SGGQ+QR +ICRALIN P ++F DEPTGALN ++ Sbjct: 123 VNKRALALMGKMGISDIASHYITEASGGQLQRVSICRALINNPNIIFADEPTGALNLKST 182 Query: 188 TEIMGILAEINQSGTTILLATHDPRVAAKAERVLYMLDGNMASEQWLGK 236 E+M IL IN+ GTTI+L THD +VAAK ERVL+M DG + SE LGK Sbjct: 183 EEVMQILLNINRDGTTIMLVTHDVKVAAKTERVLFMADGEIVSEIQLGK 231 >ref|NP_656337.1| ABC_tran, ABC transporter [Bacillus anthracis A2012] Length = 178 Score = 185 bits (469), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 94/176 (53%), Positives = 122/176 (69%), Gaps = 2/176 (1%) Query: 9 ILEASGLHKVYD-NGQSNPQPVLRNIKLQIQQGEFVAVMGPSGSGKSTLLYTVSGMDPIT 67 ILE ++K Y +G +N VL+NI L++ +GEFV+VMGPSGSGKSTLLY +SGMD ++ Sbjct: 4 ILEVKQVNKTYSMDGNANYH-VLKNIDLEVYEGEFVSVMGPSGSGKSTLLYNISGMDQMS 62 Query: 68 TGSVAFXXXXXXXXXXXXXXXIRLNEMGFIFQQMHLLKNLNIRDNILLPAYRAGQISRRS 127 +GSV +RL E+GFIFQQ +LL+NLN+ DNI+L AY A S++ Sbjct: 63 SGSVKIDSKELSCMKEEELAKLRLTEIGFIFQQSNLLRNLNLFDNIILSAYLAKCESKKI 122 Query: 128 INKSAAELMRLTGISALAERNITQVSGGQMQRAAICRALINEPVMLFGDEPTGALN 183 +NK A ELM GIS +A IT+ SGGQ+QR +ICRALIN P ++F DEPTGALN Sbjct: 123 VNKRALELMENMGISDIASHYITEASGGQLQRVSICRALINNPNIIFADEPTGALN 178 >ref|NP_243565.1| ABC transporter (ATP-binding protein) [Bacillus halodurans] pir||C83987 ABC transporter (ATP-binding protein) BH2699 [imported] - Bacillus halodurans (strain C-125) dbj|BAB06418.1| ABC transporter (ATP-binding protein) [Bacillus halodurans] Length = 251 Score = 176 bits (446), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 91/226 (40%), Positives = 139/226 (61%), Gaps = 2/226 (0%) Query: 7 MVILEASGLHKVYDNGQSNPQPVLRNIKLQIQQGEFVAVMGPSGSGKSTLLYTVSGMDPI 66 M+ILEA+ LHKVY G + L + L++++G+F+A+MGPSGSGK+TLL +SG+D Sbjct: 1 MIILEANHLHKVYGEGGTRTTVGLDQVSLRVKKGDFLAIMGPSGSGKTTLLNLLSGIDAP 60 Query: 67 TTGSVAFXXXXXXXXXXXXXXXIRLNEMGFIFQQMHLLKNLNIRDNILLPAYRAGQISRR 126 T+G++ R E+GF+FQ+ +LL +L +++NI++P + S + Sbjct: 61 TSGTIVINGDDISKMDGNQLALFRRKELGFVFQEFNLLDSLTVKENIMVPMILEKK-SAK 119 Query: 127 SINKSAAELMRLTGISALAERNITQVSGGQMQRAAICRALINEPVMLFGDEPTGALNSQA 186 + + A E+M + GI LA + +SGGQ QR A+ RAL+NEP +LF DEPTG L+S++ Sbjct: 120 HMEEKAKEVMSIFGIDGLANKYPYHLSGGQQQRVAVSRALVNEPSILFADEPTGNLDSKS 179 Query: 187 ATEIMGILAEI-NQSGTTILLATHDPRVAAKAERVLYMLDGNMASE 231 + IM +I N TTILL THD A V+++ DG + S+ Sbjct: 180 SKVIMECFEQIVNHYQTTILLVTHDVFAANYCHHVMFINDGTIHSK 225 >ref|NP_981181.1| ABC transporter, ATP-binding protein [Bacillus cereus ATCC 10987] gb|AAS43789.1| ABC transporter, ATP-binding protein [Bacillus cereus ATCC 10987] Length = 253 Score = 173 bits (438), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 87/224 (38%), Positives = 135/224 (60%), Gaps = 2/224 (0%) Query: 9 ILEASGLHKVYDNGQSNPQPVLRNIKLQIQQGEFVAVMGPSGSGKSTLLYTVSGMDPITT 68 +++ + KVY N L+ + IQ+GEFV +MGPSGSGK+TLL +S +D T Sbjct: 5 VVDVKNVQKVYGKKGENQSHALKGVSFSIQEGEFVGIMGPSGSGKTTLLNVISTLDKATG 64 Query: 69 GSVAFXXXXXXXXXXXXXXXIRLNEMGFIFQQMHLLKNLNIRDNILLPAYRAGQISRRSI 128 G V R ++GFIFQ +LL+NL+I +NI LP G +S R+I Sbjct: 65 GVVEIAGTDITQMKQGELSDFRSQKLGFIFQDFNLLENLSIYENIALPLSLQG-VSSRNI 123 Query: 129 NKSAAELMRLTGISALAERNITQVSGGQMQRAAICRALINEPVMLFGDEPTGALNSQAAT 188 ++ + GISA+ ++ ++VSGGQ QR+A RAL++EP ++ GDEPTGAL+S+ AT Sbjct: 124 GPKVEKVADMLGISAILQKYPSEVSGGQKQRSAAARALVHEPAIILGDEPTGALDSKNAT 183 Query: 189 EIMGILAEINQS-GTTILLATHDPRVAAKAERVLYMLDGNMASE 231 ++ + +N+ G +I++ THDP A+ +R+L++ DG + E Sbjct: 184 SLLDAMTNLNKDQGVSIMMVTHDPYSASYCQRILFIQDGELYKE 227 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.318 0.132 0.369 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 295,283,000 Number of extensions: 9789950 Number of successful extensions: 100417 Number of sequences better than 1.0e-05: 16549 Number of HSP's gapped: 84317 Number of HSP's successfully gapped: 17366 Length of query: 260 Length of database: 757,237,578 Length adjustment: 123 Effective length of query: 137 Effective length of database: 423,280,401 Effective search space: 57989414937 Effective search space used: 57989414937 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 124 (52.4 bits)