BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0334.0010.p (219 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_346962.1| Response regulator (CheY-like domain, HTH domai... 162 4e-39 ref|ZP_00099282.1| COG0745: Response regulators consisting of a ... 155 6e-37 ref|NP_834371.1| Two-component response regulator [Bacillus cere... 153 3e-36 ref|NP_658699.1| REC, cheY-homologous receiver domain [Bacillus ... 152 4e-36 ref|NP_847118.1| DNA-binding response regulator [Bacillus anthra... 152 4e-36 >ref|NP_346962.1| Response regulator (CheY-like domain, HTH domain) [Clostridium acetobutylicum] pir||C96939 response regulator (CheY-like domain, HTH domain) [imported] - Clostridium acetobutylicum gb|AAK78302.1| Response regulator (CheY-like domain, HTH domain) [Clostridium acetobutylicum] Length = 230 Score = 162 bits (411), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 80/184 (43%), Positives = 115/184 (62%), Gaps = 3/184 (1%) Query: 28 DLIILELSMPGADGLNLCTELRKFSDKPVLYTSHQTDDYLRIEALNRGADEFIAKPYSFE 87 +LIIL+L +P DG +C ++RK + P+L S + +D +I L GAD+++ KP+S Sbjct: 47 ELIILDLMLPEIDGFEICKQIRKIKNTPILMVSAKKEDIDKIRGLGLGADDYMTKPFSPS 106 Query: 88 VLLARIRAHLRRYKRAFPVNQRHL---ILYPGLQIDPTTHSVIAYGREVSLSSKEFRLLV 144 L+AR++AH+ RY+R + ++L I GL I+ + V G+E ++KEF LLV Sbjct: 107 ELVARVKAHISRYERLVNSSNKNLDDEIEIRGLNINKASRKVFVNGKESQFTAKEFDLLV 166 Query: 145 VLAKNPNRVFPTETLYDLIWNDMKQGDIRTVMVHIYNLRQKIEKTPSEPLYIHTVRGVGY 204 LA+NP+RVF E L+D IW G+I TV VHI +R+KIEK S P YI TV G GY Sbjct: 167 FLAQNPDRVFSKEELFDKIWGMDSFGEIATVTVHIKKIREKIEKDTSNPEYIETVWGAGY 226 Query: 205 KFNG 208 +F G Sbjct: 227 RFRG 230 >ref|ZP_00099282.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Desulfitobacterium hafniense] Length = 230 Score = 155 bits (392), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 75/181 (41%), Positives = 119/181 (65%), Gaps = 1/181 (0%) Query: 28 DLIILELSMPGADGLNLCTELRKFSDKPVLYTSHQTDDYLRIEALNRGADEFIAKPYSFE 87 D++I++L +P DG + E+RK + P++ S +++D +I L+ GAD+++ KP+S Sbjct: 49 DILIVDLMLPQLDGFEIIKEVRKKLEIPIIVLSARSEDIDKIRGLDYGADDYLTKPFSPA 108 Query: 88 VLLARIRAHLRRYKRAFPVNQR-HLILYPGLQIDPTTHSVIAYGREVSLSSKEFRLLVVL 146 L+ARIR+HL+RY+R +Q +I + GL+I+ +H V G+EV ++KE+ LL+ Sbjct: 109 ELMARIRSHLKRYERLTGKHQGIEVINHRGLEINTASHKVYVNGKEVQFTAKEYELLLFF 168 Query: 147 AKNPNRVFPTETLYDLIWNDMKQGDIRTVMVHIYNLRQKIEKTPSEPLYIHTVRGVGYKF 206 A NPN +F E ++DL+W GD+ TV VHI +R+KIE+ P+ P YI TV G GY+F Sbjct: 169 ASNPNILFSKERIFDLLWGAEYYGDLATVPVHIQKIRKKIERDPANPEYIETVWGTGYRF 228 Query: 207 N 207 N Sbjct: 229 N 229 >ref|NP_834371.1| Two-component response regulator [Bacillus cereus ATCC 14579] gb|AAP11572.1| Two-component response regulator [Bacillus cereus ATCC 14579] Length = 229 Score = 153 bits (386), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 75/182 (41%), Positives = 108/182 (59%), Gaps = 2/182 (1%) Query: 28 DLIILELSMPGADGLNLCTELRKFSDKPVLYTSHQTDDYLRIEALNRGADEFIAKPYSFE 87 DLIIL++ +P +G +C ++R D P+L S + +D +I L GAD++I KP+S Sbjct: 47 DLIILDIMLPKMNGFEICKQIRAVKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPS 106 Query: 88 VLLARIRAHLRRYKRAFP--VNQRHLILYPGLQIDPTTHSVIAYGREVSLSSKEFRLLVV 145 L+AR++AH+ RY+R QR + G+ ID V EV+ ++KEF LL Sbjct: 107 ELVARVKAHISRYERLLGNVSKQRDTLYIHGISIDQRARKVFINNEEVAFTTKEFDLLTF 166 Query: 146 LAKNPNRVFPTETLYDLIWNDMKQGDIRTVMVHIYNLRQKIEKTPSEPLYIHTVRGVGYK 205 NPN+V E L++ IW GD+ TV+VHI LR+KIE+ P+ P YI TV G GY+ Sbjct: 167 FVTNPNQVLNKEQLFERIWGLDSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYR 226 Query: 206 FN 207 FN Sbjct: 227 FN 228 >ref|NP_658699.1| REC, cheY-homologous receiver domain [Bacillus anthracis A2012] Length = 232 Score = 152 bits (385), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 74/182 (40%), Positives = 108/182 (59%), Gaps = 2/182 (1%) Query: 28 DLIILELSMPGADGLNLCTELRKFSDKPVLYTSHQTDDYLRIEALNRGADEFIAKPYSFE 87 DLIIL++ +P +G +C ++R D P+L S + +D +I L GAD++I KP+S Sbjct: 50 DLIILDIMLPKMNGFEICKQIRAIKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPS 109 Query: 88 VLLARIRAHLRRYKRAFP--VNQRHLILYPGLQIDPTTHSVIAYGREVSLSSKEFRLLVV 145 L+AR++AH+ RY+R QR + G+ ID V E++ ++KEF LL Sbjct: 110 ELVARVKAHISRYERLLGNVSKQRDTLYIHGISIDQRARKVFINNEEIAFTTKEFDLLTF 169 Query: 146 LAKNPNRVFPTETLYDLIWNDMKQGDIRTVMVHIYNLRQKIEKTPSEPLYIHTVRGVGYK 205 NPN+V E L++ IW GD+ TV+VHI LR+KIE+ P+ P YI TV G GY+ Sbjct: 170 FVTNPNQVLNKEQLFERIWGLDSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYR 229 Query: 206 FN 207 FN Sbjct: 230 FN 231 >ref|NP_847118.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gb|AAP28604.1| DNA-binding response regulator [Bacillus anthracis str. Ames] Length = 229 Score = 152 bits (385), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 74/182 (40%), Positives = 108/182 (59%), Gaps = 2/182 (1%) Query: 28 DLIILELSMPGADGLNLCTELRKFSDKPVLYTSHQTDDYLRIEALNRGADEFIAKPYSFE 87 DLIIL++ +P +G +C ++R D P+L S + +D +I L GAD++I KP+S Sbjct: 47 DLIILDIMLPKMNGFEICKQIRAIKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPS 106 Query: 88 VLLARIRAHLRRYKRAFP--VNQRHLILYPGLQIDPTTHSVIAYGREVSLSSKEFRLLVV 145 L+AR++AH+ RY+R QR + G+ ID V E++ ++KEF LL Sbjct: 107 ELVARVKAHISRYERLLGNVSKQRDTLYIHGISIDQRARKVFINNEEIAFTTKEFDLLTF 166 Query: 146 LAKNPNRVFPTETLYDLIWNDMKQGDIRTVMVHIYNLRQKIEKTPSEPLYIHTVRGVGYK 205 NPN+V E L++ IW GD+ TV+VHI LR+KIE+ P+ P YI TV G GY+ Sbjct: 167 FVTNPNQVLNKEQLFERIWGLDSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYR 226 Query: 206 FN 207 FN Sbjct: 227 FN 228 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.323 0.139 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 309,608,189 Number of extensions: 11850288 Number of successful extensions: 36547 Number of sequences better than 1.0e-05: 2792 Number of HSP's gapped: 33782 Number of HSP's successfully gapped: 2794 Length of query: 219 Length of database: 757,237,578 Length adjustment: 121 Effective length of query: 98 Effective length of database: 428,710,599 Effective search space: 42013638702 Effective search space used: 42013638702 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 123 (52.0 bits)