BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0334.0009.p (326 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00032809.1| COG0667: Predicted oxidoreductases (related t... 506 e-142 ref|NP_471447.1| similar to oxidoreductase [Listeria innocua] >g... 475 e-133 ref|NP_465529.1| similar to oxidoreductase [Listeria monocytogen... 473 e-132 ref|NP_733514.1| putative aldo/keto reductase; putative oxidored... 465 e-130 ref|NP_883906.1| putative oxidoreductase [Bordetella parapertuss... 464 e-129 >ref|ZP_00032809.1| COG0667: Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Burkholderia fungorum] Length = 390 Score = 506 bits (1303), Expect = e-142, Method: Compositional matrix adjust. Identities = 240/324 (74%), Positives = 276/324 (85%) Query: 1 MEIVKLGNTGLDVSRLCLGCMSFGEADRWVHPWVLDEDRSRIIIKQALELGINFFDTANV 60 M+ VKLG TGLDVSRLCLGCMS+G R HPW L ++ +R IKQAL+ GINFFDTANV Sbjct: 65 MDYVKLGRTGLDVSRLCLGCMSYGVPSRGPHPWTLGDEAARPFIKQALDHGINFFDTANV 124 Query: 61 YSDGTSEEIVGRALKDYAHRDEIVLATKVHFRMHQGPNGAGLSRKAIMSEIDKSLKRLGT 120 YSDGTSEEIVGRALKD+A RDEIVLATKVH RMH GPNGAGLSRK IM+EID SL+RLGT Sbjct: 125 YSDGTSEEIVGRALKDFAMRDEIVLATKVHGRMHPGPNGAGLSRKVIMAEIDNSLRRLGT 184 Query: 121 DYVDLYQIHRWDYHTPIEETMEALHDVVKAGKARYIGASAMFAWQFLKALHVAEKHGWTR 180 DYVDLYQIHRWDY TPIEETMEALHDVVKAGKARYIGAS+M+AWQF KALHVAE++GWTR Sbjct: 185 DYVDLYQIHRWDYGTPIEETMEALHDVVKAGKARYIGASSMYAWQFAKALHVAERNGWTR 244 Query: 181 FVSMQNHLNLLYREEEREMLPLCKEEKIAVIPYSPLASGRLTRDWSESTHRSETDQVQKS 240 F +MQN++NLLYREEEREMLPLC+ E I VIP+SPLA GRLTRDW+ + RSETD+ ++ Sbjct: 245 FATMQNYVNLLYREEEREMLPLCESEGIGVIPWSPLARGRLTRDWNTGSARSETDEFGRT 304 Query: 241 KYDATAKTDRLIAEQVAAIAEQRGVPRAQVALAWLLQKEPVTAPIIGATKISHLEDAAAA 300 Y T DR I E+V+ IA++RGVPRAQVALAW+LQK+P+TAPI+GATK+ HL+DA AA Sbjct: 305 LYAQTEDADRRIVERVSEIAKERGVPRAQVALAWVLQKKPITAPIVGATKLHHLDDAVAA 364 Query: 301 LSITLTPEEIASLEEPYVPHPVVG 324 LS+ L+ +EI LEE YVPH V G Sbjct: 365 LSLNLSADEIGRLEELYVPHAVTG 388 >ref|NP_471447.1| similar to oxidoreductase [Listeria innocua] pir||AG1696 oxidoreductase homolog lin2113 [imported] - Listeria innocua (strain Clip11262) emb|CAC97343.1| lin2113 [Listeria innocua] Length = 331 Score = 475 bits (1223), Expect = e-133, Method: Compositional matrix adjust. Identities = 226/327 (69%), Positives = 270/327 (82%), Gaps = 1/327 (0%) Query: 1 MEIVKLGNTGLDVSRLCLGCMSFGEADRWVHPWVLDEDRSRIIIKQALELGINFFDTANV 60 ME VK GNTG+DVS++CLG M FG+ D+W+H WVLDE SR IIK+AL+LGINFFDTAN+ Sbjct: 1 MEYVKFGNTGMDVSKICLGTMGFGDKDKWIHKWVLDEANSRPIIKKALDLGINFFDTANI 60 Query: 61 YSDGTSEEIVGRALKDYAHRDEIVLATKVHFRMHQG-PNGAGLSRKAIMSEIDKSLKRLG 119 YS G SE+IVGRALKDYA+RD+IVLATK+H M PN GLSRK I+SEID SLKRL Sbjct: 61 YSYGESEKIVGRALKDYANRDDIVLATKIHQTMRPDRPNSGGLSRKTILSEIDHSLKRLE 120 Query: 120 TDYVDLYQIHRWDYHTPIEETMEALHDVVKAGKARYIGASAMFAWQFLKALHVAEKHGWT 179 TDYVDLY IHR+D +TPIEETMEALHDVVK+GKARYIGASAM+AWQF KA VAE++GWT Sbjct: 121 TDYVDLYIIHRFDENTPIEETMEALHDVVKSGKARYIGASAMYAWQFQKAQRVAERNGWT 180 Query: 180 RFVSMQNHLNLLYREEEREMLPLCKEEKIAVIPYSPLASGRLTRDWSESTHRSETDQVQK 239 +FVSMQNH N++YREEEREM+P C++EKIA+ PYSPLASGRLTRD++E+T+RSETD +QK Sbjct: 181 KFVSMQNHYNMIYREEEREMIPFCRDEKIAITPYSPLASGRLTRDFAETTNRSETDPIQK 240 Query: 240 SKYDATAKTDRLIAEQVAAIAEQRGVPRAQVALAWLLQKEPVTAPIIGATKISHLEDAAA 299 SKYD +D+ I E+VA +A + V R ++ALAWLL K+ +T+PIIGA K SHLE A Sbjct: 241 SKYDGMMNSDKGIIERVAELALEHEVSRDKIALAWLLNKDEITSPIIGAQKESHLESAIG 300 Query: 300 ALSITLTPEEIASLEEPYVPHPVVGAL 326 AL I LT E+ LEE Y+PHPVVGAL Sbjct: 301 ALDIKLTEAEVNYLEELYIPHPVVGAL 327 >ref|NP_465529.1| similar to oxidoreductase [Listeria monocytogenes EGD-e] pir||AE1325 oxidoreductase homolog lmo2005 [imported] - Listeria monocytogenes (strain EGD-e) emb|CAD00083.1| lmo2005 [Listeria monocytogenes] Length = 331 Score = 473 bits (1217), Expect = e-132, Method: Compositional matrix adjust. Identities = 227/327 (69%), Positives = 267/327 (81%), Gaps = 1/327 (0%) Query: 1 MEIVKLGNTGLDVSRLCLGCMSFGEADRWVHPWVLDEDRSRIIIKQALELGINFFDTANV 60 M+ VK GNTG+DVS++CLG M FG+ D+W+H WVLDE SR IIK+AL+LGINFFDTAN+ Sbjct: 1 MKYVKFGNTGMDVSKICLGTMGFGDKDKWIHKWVLDEANSRPIIKKALDLGINFFDTANI 60 Query: 61 YSDGTSEEIVGRALKDYAHRDEIVLATKVHFRMHQG-PNGAGLSRKAIMSEIDKSLKRLG 119 YS G SE+IVGRALKDYA+RD+IVLATKV M PN GLSRK I+SEID SLKRL Sbjct: 61 YSYGESEKIVGRALKDYANRDDIVLATKVQQTMRPDRPNSGGLSRKTILSEIDHSLKRLE 120 Query: 120 TDYVDLYQIHRWDYHTPIEETMEALHDVVKAGKARYIGASAMFAWQFLKALHVAEKHGWT 179 TDYVDLY IHR+D +TPIEETMEALHDVVK+GKARYIGASAM+AWQF KA VAE++GWT Sbjct: 121 TDYVDLYIIHRFDENTPIEETMEALHDVVKSGKARYIGASAMYAWQFQKAQRVAERNGWT 180 Query: 180 RFVSMQNHLNLLYREEEREMLPLCKEEKIAVIPYSPLASGRLTRDWSESTHRSETDQVQK 239 +FVSMQNH N++YREEEREM+P C++EKIA+ PYSPLASGRLTRD +E+T RSETD VQK Sbjct: 181 KFVSMQNHYNMIYREEEREMIPFCRDEKIAITPYSPLASGRLTRDLNETTDRSETDPVQK 240 Query: 240 SKYDATAKTDRLIAEQVAAIAEQRGVPRAQVALAWLLQKEPVTAPIIGATKISHLEDAAA 299 SKYD D+ I E+VA +AE V R ++ALAWLL K+ +T+PIIGA K SHLE A Sbjct: 241 SKYDDMMNADKGIIERVAELAETHQVSRDKIALAWLLNKDEITSPIIGAQKESHLESAVE 300 Query: 300 ALSITLTPEEIASLEEPYVPHPVVGAL 326 AL+I LT E+ LEE Y+PHPVVGAL Sbjct: 301 ALNIKLTTSEVNYLEELYIPHPVVGAL 327 >ref|NP_733514.1| putative aldo/keto reductase; putative oxidoreductase (fragment) [Streptomyces coelicolor A3(2)] emb|CAD55277.1| putative aldo/keto reductase; putative oxidoreductase (fragment) [Streptomyces coelicolor A3(2)] Length = 322 Score = 465 bits (1196), Expect = e-130, Method: Compositional matrix adjust. Identities = 218/324 (67%), Positives = 262/324 (80%), Gaps = 3/324 (0%) Query: 1 MEIVKLGNTGLDVSRLCLGCMSFGEADRWVHPWVLDEDRSRIIIKQALELGINFFDTANV 60 M+ VKLG+TGLDVSR+CLGCM++G DR H W LDE SR +I+QALE G+ FFDTANV Sbjct: 1 MQYVKLGSTGLDVSRICLGCMTYGVPDRGTHEWTLDEAASRPLIRQALEAGVTFFDTANV 60 Query: 61 YSDGTSEEIVGRALKDYAHRDEIVLATKVHFRMHQGPNGAGLSRKAIMSEIDKSLKRLGT 120 YSDGTSEEIVG+AL D+A RD+IVLATKV+ RM GPNGAGLSRKA+M+EID SL+RLGT Sbjct: 61 YSDGTSEEIVGKALADFARRDDIVLATKVNGRMRPGPNGAGLSRKAVMTEIDHSLRRLGT 120 Query: 121 DYVDLYQIHRWDYHTPIEETMEALHDVVKAGKARYIGASAMFAWQFLKALHVAEKHGWTR 180 DYVDLYQIHR+D HTP+EETMEALHD+VKAGK RYIGAS+M+AWQF K + AE+HGWT+ Sbjct: 121 DYVDLYQIHRFDPHTPVEETMEALHDLVKAGKVRYIGASSMYAWQFSKMQYTAERHGWTK 180 Query: 181 FVSMQNHLNLLYREEEREMLPLCKEEKIAVIPYSPLASGRLTRDWSESTHRSETDQVQKS 240 FVSMQNH NL+YREEEREMLPLC ++ + V+P+SPLA GRLTRDW +T RS TD + Sbjct: 181 FVSMQNHYNLVYREEEREMLPLCADQGVGVLPWSPLARGRLTRDWDTATGRSATDTFGST 240 Query: 241 KYDATAKTDRLIAEQVAAIAEQRGVPRAQVALAWLLQKEPVTAPIIGATKISHLEDAAAA 300 Y + DR + E V IA +RGVPRA+VALAWLL ++ VTAPI+GA++ HLEDA AA Sbjct: 241 LYQ---EGDRAVVEAVTRIAGERGVPRARVALAWLLHQDTVTAPIVGASRPGHLEDAVAA 297 Query: 301 LSITLTPEEIASLEEPYVPHPVVG 324 + +TL+ EI LE PY PHP+ G Sbjct: 298 VELTLSETEIEELERPYAPHPIAG 321 >ref|NP_883906.1| putative oxidoreductase [Bordetella parapertussis 12822] emb|CAE36928.1| putative oxidoreductase [Bordetella parapertussis] Length = 326 Score = 464 bits (1194), Expect = e-129, Method: Compositional matrix adjust. Identities = 218/324 (67%), Positives = 260/324 (80%) Query: 1 MEIVKLGNTGLDVSRLCLGCMSFGEADRWVHPWVLDEDRSRIIIKQALELGINFFDTANV 60 ME V+LG+TGL VSRLCLGCM++GE R H W LDE +SR +QAL+ GINFFDTAN Sbjct: 1 MEYVRLGSTGLKVSRLCLGCMTYGEPARGNHAWTLDETQSRPFFRQALDAGINFFDTANS 60 Query: 61 YSDGTSEEIVGRALKDYAHRDEIVLATKVHFRMHQGPNGAGLSRKAIMSEIDKSLKRLGT 120 YSDGTSEE +GRAL++Y RDE+V+ATKV F + + PN GLSRKAIM EID SL+RLGT Sbjct: 61 YSDGTSEEFLGRALREYVPRDEVVVATKVFFPLRKEPNSGGLSRKAIMREIDASLRRLGT 120 Query: 121 DYVDLYQIHRWDYHTPIEETMEALHDVVKAGKARYIGASAMFAWQFLKALHVAEKHGWTR 180 DYVDLYQIHRWDY TPIEET++ALHDVVKAGKARYIGAS+M AWQF KAL++A++HGWTR Sbjct: 121 DYVDLYQIHRWDYDTPIEETLQALHDVVKAGKARYIGASSMHAWQFAKALYLADRHGWTR 180 Query: 181 FVSMQNHLNLLYREEEREMLPLCKEEKIAVIPYSPLASGRLTRDWSESTHRSETDQVQKS 240 F +MQNH NLLYREEEREML LC+ E + V+P+SPLA GRLTRDW+E + R++TD V K Sbjct: 181 FSTMQNHYNLLYREEEREMLKLCRAEGVGVLPWSPLARGRLTRDWAEGSARADTDDVLKR 240 Query: 241 KYDATAKTDRLIAEQVAAIAEQRGVPRAQVALAWLLQKEPVTAPIIGATKISHLEDAAAA 300 Y AT + DR + + V +A QRGV RAQVA+AWLL++ VTAPI+GA+K HLEDA AA Sbjct: 241 LYSATEQADRGVIDAVGEVAAQRGVSRAQVAMAWLLRQPAVTAPIVGASKPGHLEDAVAA 300 Query: 301 LSITLTPEEIASLEEPYVPHPVVG 324 L++ LT EE A LE Y PHPV G Sbjct: 301 LALRLTDEEAARLEAAYAPHPVAG 324 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.318 0.133 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 470,982,949 Number of extensions: 18329164 Number of successful extensions: 53718 Number of sequences better than 1.0e-05: 1742 Number of HSP's gapped: 50651 Number of HSP's successfully gapped: 1745 Length of query: 326 Length of database: 757,237,578 Length adjustment: 126 Effective length of query: 200 Effective length of database: 415,135,104 Effective search space: 83027020800 Effective search space used: 83027020800 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 126 (53.1 bits)