BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0334.0003.p (782 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_952345.1| sensory box histidine kinase [Geobacter sulfurr... 100 1e-19 ref|NP_951738.1| sensory box histidine kinase [Geobacter sulfurr... 93 2e-17 ref|ZP_00019041.1| hypothetical protein [Chloroflexus aurantiacus] 92 5e-17 ref|NP_520432.1| PUTATIVE TWO-COMPONENT SENSOR HISTIDINE KINASE ... 87 1e-15 ref|NP_954271.1| sensory box histidine kinase [Geobacter sulfurr... 86 3e-15 >ref|NP_952345.1| sensory box histidine kinase [Geobacter sulfurreducens PCA] gb|AAR34668.1| sensory box histidine kinase [Geobacter sulfurreducens PCA] Length = 384 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 76/235 (32%), Positives = 117/235 (49%), Gaps = 16/235 (6%) Query: 539 QHTKEENA--AYKRDVSGIRAANYLLLEAQQAERIRLSYRLHDHLLQNLIFLSRDLEELA 596 + TK ENA +Y+ + + A L A++ ER RLS LHD + Q L F L Sbjct: 148 ERTKAENALLSYQEEFRNLAAELSL---AEERERRRLSTDLHDLIGQTLAFAKIRAHSLR 204 Query: 597 DQGTVNARRMASW---LKCLYTSQQEIRLLCDELYPHIVDKADLEASLHWLLRTVKEQSG 653 + V + W L S QE+R L ++ P I+ + LEA+L WL ++ Sbjct: 205 EH--VAEDGLTQWGELTGLLDQSIQEVRSLIFQISPPILYEVGLEAALEWLGENFQDNHR 262 Query: 654 LNVSLDYRWGGETPPDSILKSNLFRIIRELVLNVQKHA--EASQLDIRFIHIPAEGICCT 711 V+ G P +K LF+++RE+++N KHA + Q+DIR + E + T Sbjct: 263 FRVNFSDD-GTLKPLREEIKVTLFQVVREVLINAAKHASPDTVQIDIRGL---GESVRIT 318 Query: 712 VSDNGKGFDATAFSEQSSFMNGSHLGLISVSSQIGHLGGELDIQSRPGKGAVITI 766 V D+G+GFD + +S G GL ++ +I LGG L I+S PG G ++T+ Sbjct: 319 VRDDGRGFDVAKAAHKSRDKAGGGFGLFNIRQRIERLGGSLAIESSPGAGTMVTV 373 >ref|NP_951738.1| sensory box histidine kinase [Geobacter sulfurreducens PCA] gb|AAR34011.1| sensory box histidine kinase [Geobacter sulfurreducens PCA] Length = 356 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 68/206 (33%), Positives = 101/206 (49%), Gaps = 6/206 (2%) Query: 565 AQQAERIRLSYRLHDHLLQNLIFLSRDLEEL--ADQGTVNARRMASWLKCLYTSQQEIRL 622 A+ ER R++ LHD + QNL L L + G + R + + + Q+IR Sbjct: 138 AEDRERSRIAGELHDQVGQNLFLAGLKLGSLKISSLGDDDRRVVEEIRHLIGGALQDIRS 197 Query: 623 LCDELYPHIVDKADLEASLHWLLRTVKEQSGLNVSLDYRWGGETPPDSILKSNLFRIIRE 682 L +L P ++ L A+L WL +E GL V + + E P + S LF+++RE Sbjct: 198 LTCQLRPPLLAHGGLVAALCWLGEQFREDFGLQVDI-FDDQHEKPLSPEVSSTLFQVVRE 256 Query: 683 LVLNVQKHAEASQLDIRFIHIPAEGICCTVSDNGKGFDATAFSEQSSFMNGSHLGLISVS 742 L+LN KHA A + I + A+ I +V D G GFD ++ S G GL + Sbjct: 257 LLLNTAKHASAPRAAIS-VTTEADSIMVSVEDGGVGFDVSSVSLNCGKSGG--FGLFNAR 313 Query: 743 SQIGHLGGELDIQSRPGKGAVITIRL 768 +I +LGG L +QS PG G IR+ Sbjct: 314 QKIEYLGGTLTVQSEPGCGTRTVIRV 339 >ref|ZP_00019041.1| hypothetical protein [Chloroflexus aurantiacus] Length = 530 Score = 92.0 bits (227), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 65/214 (30%), Positives = 111/214 (51%), Gaps = 27/214 (12%) Query: 554 GIRAANYLLLEAQQAERIRLSYRLHDHLLQNLIFLSRDLEELADQGTVNARRMASWLKCL 613 ++ AN+ L++ ++AER L+ LHD ++Q+L+ + LE + ++ ++ + L+ + Sbjct: 302 ALQEANHRLIDEREAERKALARELHDQVIQDLLSFNYQLEHVEEE--IDQESILEELQHI 359 Query: 614 YTSQQEI----RLLCDELYPHIVDKADLEASLHWLLRTVKEQSGLNVSLDY-----RWGG 664 +E+ R +C +L P +D L A+L L+ EQ+G+ V L RW Sbjct: 360 RRGIREVVAMLRQMCSDLRPPTLDSHGLAAALRSLVSQWSEQTGIRVELKIAEPLERWS- 418 Query: 665 ETPPDSILKSNLFRIIRELVLNVQKHAEASQLDIRFIHIPAEGICCTVSDNGKGF----D 720 ++ +FRI++E + NV+KHA A+Q+ + A GI ++DNGKG D Sbjct: 419 -----ETIELTVFRIVQEGLNNVRKHARATQVVLEVRRTSAAGIMVRLADNGKGMATPPD 473 Query: 721 ATAFSEQSSFMNGSHLGLISVSSQIGHLGGELDI 754 + SEQ H GLIS+S ++ L G L I Sbjct: 474 LRSLSEQ------KHFGLISISERVSLLRGTLRI 501 >ref|NP_520432.1| PUTATIVE TWO-COMPONENT SENSOR HISTIDINE KINASE TRANSCRIPTION REGULATOR PROTEIN [Ralstonia solanacearum] emb|CAD16018.1| PUTATIVE TWO-COMPONENT SENSOR HISTIDINE KINASE TRANSCRIPTION REGULATOR PROTEIN [Ralstonia solanacearum] Length = 383 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 66/211 (31%), Positives = 108/211 (51%), Gaps = 10/211 (4%) Query: 561 LLLEAQQAERIRLSYRLHDHLLQNLIFLSRDLEEL-----ADQGTVNARRMASWLKCLYT 615 L+ Q+ ER R+S LHD L Q L + +E+ + T A + + + + Sbjct: 172 FLMIGQERERKRISAELHDGLGQALTLVKLTVEDALIHIHRNNITEAAELLNTAVLRIRE 231 Query: 616 SQQEIRLLCDELYPHIVDKADLEASLHWLLRTVKEQSG-LNVSLDYRWGGETPPDSILKS 674 S ++R +C EL P ++D+ L ASL L + V++++G L V D E PD+ LK+ Sbjct: 232 SIGDLRRICSELRPALLDRLGLAASLDALCKRVEQEAGHLAVRFDSGVEDEEVPDN-LKA 290 Query: 675 NLFRIIRELVLNVQKHAEASQLDIRFIHIPAEGICCTVSDNGKGFDATAFSEQSSFMNGS 734 ++FRI +E + N +H A+++ + I + GI T+ DNG GFD +G Sbjct: 291 DIFRITQEAMNNAIRHGAATEIRLSLRRIES-GILLTIQDNGIGFDTQPLFADPVSQSG- 348 Query: 735 HLGLISVSSQIGHLGGELDIQSRPGKGAVIT 765 LGLI + ++ GG IQS G G +++ Sbjct: 349 -LGLIGMQQRVELNGGSFFIQSSVGDGTLVS 378 >ref|NP_954271.1| sensory box histidine kinase [Geobacter sulfurreducens PCA] gb|AAR36621.1| sensory box histidine kinase [Geobacter sulfurreducens PCA] Length = 518 Score = 86.3 bits (212), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 68/231 (29%), Positives = 112/231 (48%), Gaps = 16/231 (6%) Query: 549 KRDVSGIRAA-------NYLLLEAQQAERIRLSYRLHDHLLQNLIFLSRDLEELADQGTV 601 +RD++ + A + LL AQ++ER RLS LHD L Q L L + LA+ Sbjct: 261 RRDITARKEAEQRSRMLSQRLLHAQESERKRLSRELHDDLGQLLNALKIGFDTLAEDLRQ 320 Query: 602 NARRMASWL----KCLYTSQQEIRLLCDELYPHIVDKADLEASLHWLLRTVKEQSGLNVS 657 + + L + L S IR LC L+P +++ L ++ L++ Sbjct: 321 PSHDVQDRLWYLSESLNNSIHTIRRLCAGLHPSTLERLGLAETIRQQCTQAATTHSLDIE 380 Query: 658 LDYRWGGETPPDSILKSNLFRIIRELVLNVQKHAEASQLDIRFIHIPAEGICCTVSDNGK 717 L +S + NL+RI +E + NV KHA+A+++ +R + + + DNG Sbjct: 381 LKCGTMLGVRLESDTEINLYRIFQEALHNVVKHADATRVMVRLV-ASHPTVRLQIEDNGG 439 Query: 718 GFDATAFSEQSSFMNGSHLGLISVSSQIGHLGGELDIQSRPGKGAVITIRL 768 GF ++E ++G HLGLIS++ ++ LGG I S PG G +T+ + Sbjct: 440 GFSMEDYAE----LSGHHLGLISMAERVELLGGTFQIASLPGLGTAVTVEV 486 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.323 0.137 0.416 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 1,035,378,940 Number of extensions: 40556499 Number of successful extensions: 98066 Number of sequences better than 1.0e-05: 220 Number of HSP's gapped: 97948 Number of HSP's successfully gapped: 220 Length of query: 782 Length of database: 757,237,578 Length adjustment: 134 Effective length of query: 648 Effective length of database: 393,414,312 Effective search space: 254932474176 Effective search space used: 254932474176 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)