BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0334.0002.p (207 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_294711.1| DNA-binding response regulator [Deinococcus rad... 124 2e-27 ref|NP_629592.1| putative two-component system response regulato... 121 1e-26 ref|ZP_00186880.1| hypothetical protein Rxyl222501 [Rubrobacter ... 119 4e-26 ref|NP_625547.1| putative two-component system response regulato... 117 1e-25 ref|NP_828247.1| putative two-component system response regulato... 116 3e-25 >ref|NP_294711.1| DNA-binding response regulator [Deinococcus radiodurans] pir||E75450 DNA-binding response regulator - Deinococcus radiodurans (strain R1) gb|AAF10563.1| DNA-binding response regulator [Deinococcus radiodurans] Length = 239 Score = 124 bits (310), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 78/215 (36%), Positives = 111/215 (51%), Gaps = 13/215 (6%) Query: 5 IRVILIDDHPLVMDSLRARLEQEQDIRVIEAFADPRHLLEQIGVLKPDVLVLDVSLPHLD 64 I ++L+DDHP+V R LE E D+RV+ L Q L PDV+++DVS+P ++ Sbjct: 26 ITLLLVDDHPVVRKGTRELLEGETDLRVVGEAGSGEEALAQARSLTPDVILMDVSMPGMN 85 Query: 65 GFSLAKLLKKDYGSSLKIIMLSGYTYDEFYRKAYELGVNAYLSKQASYAQIINAIRQSMS 124 G K +K + S+ +++L+ Y D + E G YL K AS ++ A+R + Sbjct: 86 GIEATKAIKAEQ-PSVGVLVLTSYDDDAYVFALLEAGAAGYLLKNASEDDLLGAVRAVAA 144 Query: 125 G----HLLVPERIFN--------TSAQDKLTPVEREVLLRVAREMNNREIARDLAISQRT 172 G H + ++ T +D L+P E EVL A N+EIARDL IS RT Sbjct: 145 GESALHPSIARKVLERFSVASTPTPPEDDLSPRELEVLRVAASGRTNKEIARDLDISPRT 204 Query: 173 VEYHLTAILQKLGVKSRVGAVAKGYELGVLGPSLL 207 V+ HL I KLGV SR AV G + G + P L Sbjct: 205 VQVHLANIFSKLGVGSRTEAVLHGIKRGWIDPRTL 239 >ref|NP_629592.1| putative two-component system response regulator [Streptomyces coelicolor A3(2)] emb|CAB76009.1| putative two-component system response regulator [Streptomyces coelicolor A3(2)] Length = 224 Score = 121 bits (303), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 74/209 (35%), Positives = 110/209 (52%), Gaps = 11/209 (5%) Query: 5 IRVILIDDHPLVMDSLRARLEQEQDIRVIEAFADPRHLLEQIGVLKPDVLVLDVSLPHLD 64 I ++++DDHP+V D LR E RV+ A +E+ L PDV+++D+ +P Sbjct: 17 ISLLIVDDHPVVRDGLRGMFESAPGFRVLGEAAGGTEAVERAAALDPDVVLMDLRMPGGS 76 Query: 65 GFSLAKLLKKDYGSSLKIIMLSGYTYDEFYRKAYELGVNAYLSKQASYAQIINAIRQSMS 124 G + + L + G+ ++++L+ Y D A E G YL K A + A+R + Sbjct: 77 GVAAIRELTR-RGARARVLVLTTYDTDSDTLPAIEAGATGYLLKDAPRDDLFTAVRAAAQ 135 Query: 125 GH-LLVPE---------RIFNTSAQDKLTPVEREVLLRVAREMNNREIARDLAISQRTVE 174 G +L P R T + L+ EREVL VAR +N+EIAR+L IS+ TV+ Sbjct: 136 GRTVLSPAVASRLVSAVRAPKTPGAEPLSAREREVLALVARGTSNKEIARELFISEATVK 195 Query: 175 YHLTAILQKLGVKSRVGAVAKGYELGVLG 203 HLT + KLGV R AVA Y+ G+LG Sbjct: 196 THLTHLYAKLGVNDRAAAVATAYDRGILG 224 >ref|ZP_00186880.1| hypothetical protein Rxyl222501 [Rubrobacter xylanophilus DSM 9941] Length = 232 Score = 119 bits (298), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 71/218 (32%), Positives = 124/218 (56%), Gaps = 16/218 (7%) Query: 5 IRVILIDDHPLVMDSLRARLEQEQDIRVIEAFADPRHLLEQIGVLKPDVLVLDVSLPHLD 64 +R+I++DDH L+ R LEQE D V+ + R +E L+PDV+V+D+++P +D Sbjct: 11 VRLIVVDDHDLIRAGFRLVLEQEPDFEVVGEASSGREAIELCRRLRPDVVVMDLAMPGVD 70 Query: 65 GFSLAKLLKKDYGSSLKIIMLSGYTYDEFYRKAYELGVNAYLSKQASYAQIINAIRQSMS 124 G + +K+++ + +++++ E+ +A + G Y+ K + ++I+A+R+ +S Sbjct: 71 GLEATRRIKEEH-PQVAVLVVTALEDPEYMLEALKAGAAGYVLKSSPLPRVISALRRLLS 129 Query: 125 GHLLVPERIFNTSAQD---------------KLTPVEREVLLRVAREMNNREIARDLAIS 169 G + + + QD +LT EREVL+ +AR N EIAR+L IS Sbjct: 130 GESPLNQELAARLIQDLARRPGGGGNPPPAEELTAREREVLVLMARGRTNPEIARELVIS 189 Query: 170 QRTVEYHLTAILQKLGVKSRVGAVAKGYELGVLGPSLL 207 + T + H+ I++KLGV R AVA+ +ELG++ PS L Sbjct: 190 RGTAKSHVQNIIRKLGVSDRTQAVARAFELGLIEPSHL 227 >ref|NP_625547.1| putative two-component system response regulator [Streptomyces coelicolor A3(2)] emb|CAB99140.1| putative two-component system response regulator [Streptomyces coelicolor A3(2)] Length = 220 Score = 117 bits (294), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 74/218 (33%), Positives = 117/218 (53%), Gaps = 17/218 (7%) Query: 5 IRVILIDDHPLVMDSLRARLEQEQDIRVIEAFADPRHLLEQIGVLKPDVLVLDVSLPHLD 64 +RV+L+DD PLV LRA LE + DI V+ AD ++ + ++PDV+ +DV +P LD Sbjct: 3 VRVLLVDDEPLVRAGLRAVLEAQPDIEVVGEAADGAAVVPLVRQVRPDVVAMDVRMPLLD 62 Query: 65 GFSLAKLLKKDYGSSLKIIMLSGYTYDEFYRKAYELGVNAYLSKQASYAQIINAIRQSMS 124 G + L + KI++++ + DE+ +A G + +L K+A A+I++A+R Sbjct: 63 GIEATRALLRTVADPPKILVVTTFENDEYVYEALRAGADGFLLKRARPAEIVHAVRLIAE 122 Query: 125 GH-LLVPERIFNTSAQ----------------DKLTPVEREVLLRVAREMNNREIARDLA 167 G LL P + +A+ +LT E EVL +AR ++N EIA L Sbjct: 123 GESLLFPASVRQLAAEYGDGGGNRAARAELARARLTEREGEVLRLMARGLSNAEIAARLV 182 Query: 168 ISQRTVEYHLTAILQKLGVKSRVGAVAKGYELGVLGPS 205 + TV+ H++A+L KLG + R AV YE G + P Sbjct: 183 VGTETVKSHVSAVLAKLGARDRTQAVITAYESGFVAPG 220 >ref|NP_828247.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] dbj|BAC74782.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 220 Score = 116 bits (290), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 72/218 (33%), Positives = 115/218 (52%), Gaps = 17/218 (7%) Query: 5 IRVILIDDHPLVMDSLRARLEQEQDIRVIEAFADPRHLLEQIGVLKPDVLVLDVSLPHLD 64 + V+L+DD PLV LRA LE + DI V+ AD ++ + L+PDV+ +DV +P +D Sbjct: 3 VTVLLVDDEPLVRAGLRAVLEAQPDIEVVGEAADGAAVIPLVRQLRPDVVAMDVRMPLMD 62 Query: 65 GFSLAKLLKKDYGSSLKIIMLSGYTYDEFYRKAYELGVNAYLSKQASYAQIINAIRQSMS 124 G + + + KI++++ + DE+ +A G + +L K+A A+I++A+R Sbjct: 63 GIEATRAVLRTVDRPPKILVVTTFENDEYVYEALRAGADGFLLKRARPAEIVHAVRLVAE 122 Query: 125 GH-LLVPERIFNTSAQD----------------KLTPVEREVLLRVAREMNNREIARDLA 167 G LL P + +A+ LT E EVL +AR ++N EIA L Sbjct: 123 GESLLFPASVRQLAAEHGDGGGNRAARAVMERAALTDREGEVLRLMARGLSNAEIAGQLV 182 Query: 168 ISQRTVEYHLTAILQKLGVKSRVGAVAKGYELGVLGPS 205 + TV+ H++A+L KLG + R AV YE G + P Sbjct: 183 VGTETVKSHVSAVLAKLGARDRTQAVIAAYESGFVAPG 220 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.321 0.138 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 277,177,514 Number of extensions: 10246915 Number of successful extensions: 43144 Number of sequences better than 1.0e-05: 1324 Number of HSP's gapped: 43914 Number of HSP's successfully gapped: 1325 Length of query: 207 Length of database: 757,237,578 Length adjustment: 120 Effective length of query: 87 Effective length of database: 431,425,698 Effective search space: 37534035726 Effective search space used: 37534035726 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 123 (52.0 bits)