BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0333.0009.p (177 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_623402.1| predicted thioesterase [Thermoanaerobacter teng... 112 4e-24 ref|NP_764588.1| conserved hypothetical protein [Staphylococcus ... 103 1e-21 ref|NP_692605.1| hypothetical protein OB1684 [Oceanobacillus ihe... 101 9e-21 ref|NP_371875.1| conserved hypothetical protein [Staphylococcus ... 98 8e-20 ref|NP_646055.1| conserved hypothetical protein [Staphylococcus ... 98 9e-20 >ref|NP_623402.1| predicted thioesterase [Thermoanaerobacter tengcongensis] gb|AAM25006.1| predicted thioesterase [Thermoanaerobacter tengcongensis] Length = 138 Score = 112 bits (280), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 58/154 (37%), Positives = 84/154 (54%), Gaps = 24/154 (15%) Query: 18 RVRYQETDQMGVVYHANYLSWFESGRTEMFRELGFAYRSLENMGVLLPVTTADLQFKSPA 77 RVRY ETD+MGVVY+ANYL WFE GRTE FR LG YR LE ++LPV A ++ S A Sbjct: 9 RVRYGETDKMGVVYYANYLHWFEIGRTEFFRSLGMTYRDLEERDIMLPVIEAHCKYFSSA 68 Query: 78 RYDDLVAVYARLTTFSALRVVYEYEIRRLAGTETGDPEAFGLAGGSAPADVEQLPGELLV 137 YDDL+ + RL + R+ + YE+ + + G+LL Sbjct: 69 FYDDLIIIRTRLEFVTGTRIKFLYEV------------------------IRKEDGKLLA 104 Query: 138 TGSTSHVWLNTDWKPVRLDRVLPELFLAITMALR 171 G T H + ++ KP+ L +V+PE++ + ++ Sbjct: 105 QGYTEHPFTDSTRKPINLKKVMPEVYQMLVECIQ 138 >ref|NP_764588.1| conserved hypothetical protein [Staphylococcus epidermidis ATCC 12228] gb|AAO04630.1| conserved hypothetical protein [Staphylococcus epidermidis ATCC 12228] Length = 155 Score = 103 bits (258), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 58/148 (39%), Positives = 75/148 (50%), Gaps = 26/148 (17%) Query: 15 TTFRVRYQETDQMGVVYHANYLSWFESGRTEMFRELGFAYRSLENMGVLLPVTTADLQFK 74 T RYQETD+MGV+YH NY +WFE RT+ R+LGF+Y S+E GV+ PV +Q+K Sbjct: 6 TEIEARYQETDKMGVIYHGNYATWFEVARTDYIRKLGFSYASMEEQGVISPVVDLKVQYK 65 Query: 75 SPARYDDLVAVYARLTTFSALRVVYEYEIRRLAGTETGDPEAFGLAGGSAPADVEQLPGE 134 Y + V V + +S LR Y YE V GE Sbjct: 66 KSIYYPEKVTVKTWVEKYSRLRSTYCYE-------------------------VYNENGE 100 Query: 135 LLVTGSTSHVWLNTD-WKPVRLDRVLPE 161 L TGST + + D +KP+RLDR PE Sbjct: 101 LATTGSTELICIKADTFKPIRLDRYFPE 128 >ref|NP_692605.1| hypothetical protein OB1684 [Oceanobacillus iheyensis HTE831] dbj|BAC13640.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831] Length = 140 Score = 101 bits (251), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 60/160 (37%), Positives = 81/160 (50%), Gaps = 26/160 (16%) Query: 15 TTFRVRYQETDQMGVVYHANYLSWFESGRTEMFRELGFAYRSLENMGVLLPVTTADLQFK 74 T VRYQETDQMGVVYHANYL WFE GRT+ +G Y +E GV+ PV A++ FK Sbjct: 6 TPIEVRYQETDQMGVVYHANYLVWFEIGRTKYIEAIGLKYNDMEKHGVVSPVIDANISFK 65 Query: 75 SPARYDDLVAVYARLTTFSALRVVYEYEIRRLAGTETGDPEAFGLAGGSAPADVEQLPGE 134 P RY + V L ++ +R VY Y+I EQ G+ Sbjct: 66 RPIRYAEETHVETWLESYDGIRTVYGYKIIN-----------------------EQ--GK 100 Query: 135 LLVTGSTSHVWLNTD-WKPVRLDRVLPELFLAITMALREE 173 + V G+T+H +N + ++P+ + R PE A L E Sbjct: 101 VAVEGTTTHTIVNKETFRPLSVRRTFPEWHKAYQEQLEGE 140 >ref|NP_371875.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus Mu50] ref|NP_374464.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus N315] pir||G89910 conserved hypothetical protein SA1185 [imported] - Staphylococcus aureus (strain N315) dbj|BAB42443.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus N315] dbj|BAB57513.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus Mu50] Length = 155 Score = 98.2 bits (243), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 58/166 (34%), Positives = 80/166 (48%), Gaps = 28/166 (16%) Query: 15 TTFRVRYQETDQMGVVYHANYLSWFESGRTEMFRELGFAYRSLENMGVLLPVTTADLQFK 74 T RY ETD+MGV+YH NY +WFE R + +LGF+Y +E G++ PVT ++ +K Sbjct: 6 TEIEARYAETDKMGVIYHGNYATWFEVARLDYISKLGFSYADMEKQGIISPVTDLNVNYK 65 Query: 75 SPARYDDLVAVYARLTTFSALRVVYEYEIRRLAGTETGDPEAFGLAGGSAPADVEQLPGE 134 Y + V V + +S LR VY+YEI GE Sbjct: 66 KSIFYPEKVKVKTWVEKYSRLRSVYKYEIF-------------------------NEKGE 100 Query: 135 LLVTGSTSHVWLNTD-WKPVRLDRVLPELFLAIT--MALREEGGAV 177 L TGST + + D +KP+RLDR P+ A + L EG V Sbjct: 101 LATTGSTELICIKEDTFKPIRLDRYFPDWHEAYSKVQTLNNEGKTV 146 >ref|NP_646055.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MW2] dbj|BAB95103.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MW2] Length = 155 Score = 97.8 bits (242), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 58/166 (34%), Positives = 80/166 (48%), Gaps = 28/166 (16%) Query: 15 TTFRVRYQETDQMGVVYHANYLSWFESGRTEMFRELGFAYRSLENMGVLLPVTTADLQFK 74 T RY ETD+MGV+YH NY +WFE R + +LGF+Y +E G++ PVT ++ +K Sbjct: 6 TEIEARYAETDKMGVIYHGNYATWFEVARLDYISKLGFSYADMEKQGIISPVTDLNVNYK 65 Query: 75 SPARYDDLVAVYARLTTFSALRVVYEYEIRRLAGTETGDPEAFGLAGGSAPADVEQLPGE 134 Y + V V + +S LR VY+YEI GE Sbjct: 66 KSIFYPEKVKVKTWVEKYSRLRSVYKYEIF-------------------------NEKGE 100 Query: 135 LLVTGSTSHVWLNTD-WKPVRLDRVLPELFLAIT--MALREEGGAV 177 L TGST + + D +KP+RLDR P+ A + L EG V Sbjct: 101 LATTGSTELICIKEDTFKPIRLDRYFPDWHEAYSKVQTLNNEGKTV 146 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.320 0.136 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 271,164,457 Number of extensions: 10661255 Number of successful extensions: 22699 Number of sequences better than 1.0e-05: 240 Number of HSP's gapped: 22656 Number of HSP's successfully gapped: 240 Length of query: 177 Length of database: 757,237,578 Length adjustment: 117 Effective length of query: 60 Effective length of database: 439,570,995 Effective search space: 26374259700 Effective search space used: 26374259700 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 122 (51.6 bits)