BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0331.0002.p (196 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_977532.1| transcriptional regulator, TetR family, putativ... 125 5e-28 ref|NP_980994.1| transcriptional regulator, TetR family [Bacillu... 100 3e-20 ref|NP_658599.1| tetR, Bacterial regulatory proteins, tetR famil... 99 5e-20 ref|NP_834276.1| Transcriptional regulator, TetR family [Bacillu... 99 5e-20 ref|NP_832829.1| Transcriptional regulator, TetR family [Bacillu... 96 4e-19 >ref|NP_977532.1| transcriptional regulator, TetR family, putative [Bacillus cereus ATCC 10987] gb|AAS40140.1| transcriptional regulator, TetR family, putative [Bacillus cereus ATCC 10987] Length = 181 Score = 125 bits (314), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 60/182 (32%), Positives = 113/182 (62%), Gaps = 5/182 (2%) Query: 6 KTDRRIIRTKQSITKSFLELFSEKDLEQITINEIAERANVNRGTVYLHYSDKYDLLDKCI 65 K DRRII+++ +I +F+E+ ++IT+ I E+AN+ R T YLHY DKY+LLDK + Sbjct: 3 KIDRRIIKSQNAIQSAFIEMLITDGFDEITVKNITEKANIGRKTFYLHYLDKYNLLDKIV 62 Query: 66 EDHINELISLCKKQEANPVSQGMVYNSKPVFDYIRDHFPFFSAMFSNQRASLFRDRLLHF 125 +DH+++L +C +++ ++G + + F+Y ++H PFF+A+F + F+ +LL F Sbjct: 63 DDHLDQLKEICYEKQ----NKGFIEGTIIWFEYFKEHKPFFAALFKSNSTLSFQKKLLTF 118 Query: 126 ISASLMDKMEGPDN-GHVIDNELNAQFLASAFIGIVEWWIRHQMPHSTDFMADQVRKLFK 184 I + K+ + ID + +FL +A +GI+E ++ +++ +++A QV +L + Sbjct: 119 IMGEIEKKLNTNTSINKNIDKHIILKFLGTAVMGILESYVLNEIDSDVEYVATQVGELMR 178 Query: 185 KN 186 +N Sbjct: 179 RN 180 >ref|NP_980994.1| transcriptional regulator, TetR family [Bacillus cereus ATCC 10987] gb|AAS43602.1| transcriptional regulator, TetR family [Bacillus cereus ATCC 10987] Length = 205 Score = 99.8 bits (247), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 55/183 (30%), Positives = 100/183 (54%), Gaps = 8/183 (4%) Query: 8 DRRIIRTKQSITKSFLELFSEKDLEQITINEIAERANVNRGTVYLHYSDKYDLLDKCIED 67 D R+ RT+Q I +F+ L EK E +T+ IAERA VNR T Y HY DKYDLLDK IE+ Sbjct: 8 DPRVKRTRQLIQDAFVALVGEKGFENVTVQHIAERAPVNRATFYSHYHDKYDLLDKSIEE 67 Query: 68 HINELISLCKKQEANPVSQGMVYNSK-----PVFDYIRDHFPFFSAMFSNQRASLFRDRL 122 + +L + K++ N + ++S +F++I ++ F++ M ++ A + ++ Sbjct: 68 MLEKLTKVIKQKNRNKEDFQLTFDSPHPSFLALFEHIAENANFYNVMLGDKAAGNYTYKM 127 Query: 123 LHFISASLMDKM---EGPDNGHVIDNELNAQFLASAFIGIVEWWIRHQMPHSTDFMADQV 179 + I L + + D ++ ++ ++ A +G++ W++ M ++ FMA Q+ Sbjct: 128 MKAIQTHLTLSLSISQPNDEKLMVPRDILISYVTGAHLGMIMSWLKKGMIYTPHFMAMQL 187 Query: 180 RKL 182 +L Sbjct: 188 TRL 190 >ref|NP_658599.1| tetR, Bacterial regulatory proteins, tetR family [Bacillus anthracis A2012] ref|NP_847017.1| transcriptional regulator, TetR family [Bacillus anthracis str. Ames] gb|AAP28503.1| transcriptional regulator, TetR family [Bacillus anthracis str. Ames] Length = 205 Score = 99.0 bits (245), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 55/183 (30%), Positives = 99/183 (54%), Gaps = 8/183 (4%) Query: 8 DRRIIRTKQSITKSFLELFSEKDLEQITINEIAERANVNRGTVYLHYSDKYDLLDKCIED 67 D R+ RT+Q I +F+ L EK E +T+ IAERA VNR T Y HY DKYDLLDK IE+ Sbjct: 8 DPRVKRTRQLIQDAFVALVGEKGFENVTVQHIAERAPVNRATFYSHYHDKYDLLDKSIEE 67 Query: 68 HINELISLCKKQEANPVSQGMVYNSK-----PVFDYIRDHFPFFSAMFSNQRASLFRDRL 122 + +L + K + N + ++S +F++I ++ F++ M ++ A + ++ Sbjct: 68 MLEKLTEVIKPKNRNKEDFQLAFDSPHPNFLALFEHIAENANFYNVMLGDKAAGNYTYKM 127 Query: 123 LHFISASLMDKM---EGPDNGHVIDNELNAQFLASAFIGIVEWWIRHQMPHSTDFMADQV 179 + I L + + D ++ ++ ++ A +G++ W++ M ++ FMA Q+ Sbjct: 128 MKAIQTHLTLSLSISQPNDEKLMVPRDILISYVTGAHLGMIMSWLKRGMIYTPHFMAMQL 187 Query: 180 RKL 182 +L Sbjct: 188 TRL 190 >ref|NP_834276.1| Transcriptional regulator, TetR family [Bacillus cereus ATCC 14579] gb|AAP11477.1| Transcriptional regulator, TetR family [Bacillus cereus ATCC 14579] Length = 205 Score = 99.0 bits (245), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 55/183 (30%), Positives = 99/183 (54%), Gaps = 8/183 (4%) Query: 8 DRRIIRTKQSITKSFLELFSEKDLEQITINEIAERANVNRGTVYLHYSDKYDLLDKCIED 67 D R+ RT+Q I +F+ L EK E +T+ IAERA VNR T Y HY DKYDLLDK IE+ Sbjct: 8 DPRVKRTRQLIQDAFVALVGEKGFENVTVQHIAERAPVNRATFYSHYHDKYDLLDKSIEE 67 Query: 68 HINELISLCKKQEANPVSQGMVYNSK-----PVFDYIRDHFPFFSAMFSNQRASLFRDRL 122 + +L + K + N + ++S +F++I ++ F++ M ++ A + ++ Sbjct: 68 MLEKLTEVIKPRNRNKEDFQLTFDSPHPSFLALFEHIAENTNFYNVMLGDKAAGNYTYKM 127 Query: 123 LHFISASLMDKM---EGPDNGHVIDNELNAQFLASAFIGIVEWWIRHQMPHSTDFMADQV 179 + I L + + D ++ ++ ++ A +G++ W++ M ++ FMA Q+ Sbjct: 128 MKAIQTHLTLSLSISQPNDEKLMVPRDILISYVTGAHLGMIMSWLKRGMIYTPHFMAMQL 187 Query: 180 RKL 182 +L Sbjct: 188 TRL 190 >ref|NP_832829.1| Transcriptional regulator, TetR family [Bacillus cereus ATCC 14579] gb|AAP10030.1| Transcriptional regulator, TetR family [Bacillus cereus ATCC 14579] Length = 205 Score = 95.9 bits (237), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 54/181 (29%), Positives = 96/181 (53%), Gaps = 13/181 (7%) Query: 8 DRRIIRTKQSITKSFLELFSEKDLEQITINEIAERANVNRGTVYLHYSDKYDLLDKCIED 67 D R++RTK +I + +EL EK + IT+ +I +AN+NRGT Y HY DK+DL+ KC ED Sbjct: 7 DLRVVRTKTAIRNALVELIEEKGFDAITVKDITTKANINRGTFYAHYQDKFDLMTKCQED 66 Query: 68 HINELISLCKKQEANPVSQGMVYNSKP---------VFDYIRDHFPFFSAMFSNQRASLF 118 + E S+ KQ+ V + N P + +++ ++ F A+ S + F Sbjct: 67 IMYEFSSIA-KQKFPEVIADLGSNPSPTMPFILITSILEFLNENSDFMRAVLSPKGDLSF 125 Query: 119 RDRLLHFISASLMDKMEGP---DNGHVIDNELNAQFLASAFIGIVEWWIRHQMPHSTDFM 175 + +L F+ +L + GP ++ +E ++ASA IG+++ W+ + + + + Sbjct: 126 QTKLKDFMWKTLFEDTNGPLINKENLLVPSEYLTSYMASAHIGVIQQWLNNGQKETPEEI 185 Query: 176 A 176 A Sbjct: 186 A 186 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.322 0.136 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 275,155,701 Number of extensions: 10598203 Number of successful extensions: 29812 Number of sequences better than 1.0e-05: 86 Number of HSP's gapped: 29782 Number of HSP's successfully gapped: 87 Length of query: 196 Length of database: 757,237,578 Length adjustment: 119 Effective length of query: 77 Effective length of database: 434,140,797 Effective search space: 33428841369 Effective search space used: 33428841369 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 122 (51.6 bits)