BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0327.0020.p (1341 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00181616.1| hypothetical protein Mther037501 [Moorella th... 100 3e-19 gb|AAD09354.1| s-layer associated multidomain endoglucanase [The... 100 4e-19 ref|NP_840257.1| Hemolysin-type calcium-binding region:RTX N-ter... 98 2e-18 ref|ZP_00061713.1| hypothetical protein [Clostridium thermocellu... 95 1e-17 gb|EAK20455.1| unknown [environmental sequence] 87 4e-15 >ref|ZP_00181616.1| hypothetical protein Mther037501 [Moorella thermoacetica ATCC 39073] Length = 308 Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 60/181 (33%), Positives = 93/181 (51%) Query: 1154 RSFTDMNTHWSKAIVSQLAAKNIIDSSYGSTFKPEQKITRAEFAVMXXXXXXXXXXXETA 1213 ++F+D+ HW++ + +AA+++ S FKPE ++TRAEF A Sbjct: 124 KTFSDIQGHWAQRDIEIMAARHVAAGISASEFKPEGQVTRAEFTAFLLRTLGISEDRSAA 183 Query: 1214 QRFRDVQPSTQTGDYXXXXXXXXXXXXNTDATFRPNDNITREQLAIMIIRAMEYTGRPIT 1273 RF D+QP D +FRP+ I+R+++A M+ RA+ Y G+ + Sbjct: 184 NRFADIQPGDWYYGAVVTASRTGLVAGYEDGSFRPDKAISRQEMAAMLARALAYAGQKVD 243 Query: 1274 LNGTSATALVAFKDRSKIQNQAAEFVAKAVQQGIILGMTTTEFQPQGNATRAQAAVMLQR 1333 + G L F D + + A E A AV+ G+I+G T T F P GNATRA+ VML+R Sbjct: 244 VAGRVDDILSKFSDNGSLASWARESAAVAVESGLIVGRTATTFVPLGNATRAETVVMLKR 303 Query: 1334 M 1334 + Sbjct: 304 L 304 >gb|AAD09354.1| s-layer associated multidomain endoglucanase [Thermoanaerobacterium polysaccharolyticum] Length = 1097 Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 60/190 (31%), Positives = 89/190 (46%), Gaps = 7/190 (3%) Query: 1155 SFTDMNTHWSKAIVSQLAAKNIIDSSYGSTFKPEQKITRAEFAVMXXXXXXXXXXXETAQ 1214 FTD+++ W+K + LA+KNII TFKP+++ITRAEF M Sbjct: 912 KFTDISSSWAKNEIQVLASKNIISGYPDGTFKPDKRITRAEFVSMLVKALGIKQSIPDVP 971 Query: 1215 RFRDVQPSTQTGDY---XXXXXXXXXXXXNTDATFRPNDNITREQLAIMIIRAMEYTGRP 1271 F DV GD+ F+P+ ITR+++ +M++ A+ Sbjct: 972 TFSDVN----KGDWYYGLVEAAKSTGIASGYGKQFKPDMQITRQEMMVMVVNALRVNKVE 1027 Query: 1272 ITLNGTSATALVAFKDRSKIQNQAAEFVAKAVQQGIILGMTTTEFQPQGNATRAQAAVML 1331 ++ + L FKD K+QN A + +A V G+I G P G ATRAQAA ++ Sbjct: 1028 KFVSKGDVSVLGKFKDGGKVQNWAKDAMAIGVSNGLIKGTGDEYLSPDGRATRAQAAAVI 1087 Query: 1332 QRMLTMAGYL 1341 RML G + Sbjct: 1088 YRMLLQLGRI 1097 >ref|NP_840257.1| Hemolysin-type calcium-binding region:RTX N-terminal domain [Nitrosomonas europaea ATCC 19718] emb|CAD84072.1| Hemolysin-type calcium-binding region:RTX N-terminal domain [Nitrosomonas europaea ATCC 19718] Length = 3064 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 114/421 (27%), Positives = 187/421 (44%), Gaps = 61/421 (14%) Query: 495 DKTAPVLKTALVD-NNRTIRLIYDEALKTEAALLPSSFAVTVNDEKRAIDSISIQGDSIY 553 D TAP +A + ++ L YDE L T F V V+ + ++++ G ++ Sbjct: 796 DTTAPTFVSAATSADGSSLVLTYDEPLDTTHPPATDDFVVNVDGTPVTVSNVTVNGSTVT 855 Query: 554 IKLSTGITVGQVIKVSYSG-----GLRPIQDLSGNNASTFSQYQVTNGVQSALTTIKDGT 608 ++L+T + G+ + +SY+ L IQDL+GN+A++ VTN V + + T Sbjct: 856 LELATPVNNGETVTLSYTDPTAGDDLNAIQDLAGNDAASLLNSPVTNTVPDTIAPTLNIT 915 Query: 609 LT------GKTVLLNFNDTLQAVNPNAYSQFSVYADGYSLGTNAISSSGAKLNLS-LDNA 661 T G+ + + F QFS + + T+ + + G+ + +D+ Sbjct: 916 ATDLVLAAGEAITVTF-------------QFSEAVIDF-VETDVVVTGGSLSAFTQVDDD 961 Query: 662 ATNAQVIRVSYSAGSYPVADTNGQSVANFSDFYIRNSG-------------DNVPPVFQS 708 A + A S V NG F+D N G D PP S Sbjct: 962 TWTATFTQTGSDAPSISVP--NGT----FTDLA-GNPGTGDTLDGTNGFMADLTPPALLS 1014 Query: 709 AAGS--GNKIVLTYNEGISSGSLPMNSQFSVLVGSKPNYVTAVAAGGTQVTLTLQSALAV 766 AA S G+ +VLTY+E + + P F V V P V+ V G+ VTL L + + Sbjct: 1015 AATSANGSSLVLTYDEPLDTTHPPATDDFVVNVDGTPVTVSNVTVNGSTVTLELATPVNN 1074 Query: 767 NQPTTVSYVPGTTG-----IADLNGNRA------PYLNQQSVNISGTTVSDISSAT-ITG 814 + T+SY T G I DL GN A P N V T + +S+AT G Sbjct: 1075 GETVTLSYTDPTAGDDLNAIQDLAGNDAASLLNSPVTNTVPVTPDTTAPTFVSAATSADG 1134 Query: 815 DELLVTFNKTMQASSGLNANQFGVRFDGSTVGIQSYYISGSTLKLTLSSVVKSGQTVDLS 874 L++T+++ + + + F V DG+ + + + ++GST+ L L++ V +G+TV LS Sbjct: 1135 SSLVLTYDEPLDTTHPPATDDFVVNVDGTPITVSNVTVNGSTVTLELATPVNNGETVTLS 1194 Query: 875 Y 875 Y Sbjct: 1195 Y 1195 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 114/421 (27%), Positives = 187/421 (44%), Gaps = 61/421 (14%) Query: 495 DKTAPVLKTALVD-NNRTIRLIYDEALKTEAALLPSSFAVTVNDEKRAIDSISIQGDSIY 553 D TAP +A + ++ L YDE L T F V V+ + ++++ G ++ Sbjct: 1781 DTTAPTFVSAATSADGSSLVLTYDEPLDTTHPPATDDFVVNVDGTPVTVSNVTVNGSTVT 1840 Query: 554 IKLSTGITVGQVIKVSYSG-----GLRPIQDLSGNNASTFSQYQVTNGVQSALTTIKDGT 608 ++L+T + G+ + +SY+ L IQDL+GN+A++ VTN V + + T Sbjct: 1841 LELATPVNNGETVTLSYTDPTAGDDLNAIQDLAGNDAASLLNSPVTNTVPDTIAPTLNIT 1900 Query: 609 LT------GKTVLLNFNDTLQAVNPNAYSQFSVYADGYSLGTNAISSSGAKLNLS-LDNA 661 T G+ + + F QFS + + T+ + + G+ + +D+ Sbjct: 1901 ATDLVLAAGEAITVTF-------------QFSEAVIDF-VETDVVVTGGSLSAFTQVDDD 1946 Query: 662 ATNAQVIRVSYSAGSYPVADTNGQSVANFSDFYIRNSG-------------DNVPPVFQS 708 A + A S V NG F+D N G D PP S Sbjct: 1947 TWTATFTQTGSDAPSISVP--NGT----FTDLA-GNPGTGDTLDGTNGFMADLTPPALLS 1999 Query: 709 AAGS--GNKIVLTYNEGISSGSLPMNSQFSVLVGSKPNYVTAVAAGGTQVTLTLQSALAV 766 AA S G+ +VLTY+E + + P F V V P V+ V G+ VTL L + + Sbjct: 2000 AATSANGSSLVLTYDEPLDTTHPPATDDFVVNVDGTPVTVSNVTVNGSTVTLELATPVNN 2059 Query: 767 NQPTTVSYVPGTTG-----IADLNGNRA------PYLNQQSVNISGTTVSDISSAT-ITG 814 + T+SY T G I DL GN A P N V T + +S+AT G Sbjct: 2060 GETVTLSYTDPTAGDDLNAIQDLAGNDAASLLNSPVTNTVPVTPDTTAPTFVSAATSADG 2119 Query: 815 DELLVTFNKTMQASSGLNANQFGVRFDGSTVGIQSYYISGSTLKLTLSSVVKSGQTVDLS 874 L++T+++ + + + F V DG+ + + + ++GST+ L L++ V +G+TV LS Sbjct: 2120 SSLVLTYDEPLDTTHPPATDDFVVNVDGTPITVSNVTVNGSTVTLELATPVNNGETVTLS 2179 Query: 875 Y 875 Y Sbjct: 2180 Y 2180 Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 118/450 (26%), Positives = 195/450 (43%), Gaps = 56/450 (12%) Query: 461 LDIANGAFVDANNSQVIYGGLSGKNAWSFQTYSLDKTAPVLKTALVD-NNRTIRLIYDEA 519 + + NG F D + L G N + D T P L +A N ++ L YDE Sbjct: 977 ISVPNGTFTDLAGNPGTGDTLDGTNG-----FMADLTPPALLSAATSANGSSLVLTYDEP 1031 Query: 520 LKTEAALLPSSFAVTVNDEKRAIDSISIQGDSIYIKLSTGITVGQVIKVSYSG-----GL 574 L T F V V+ + ++++ G ++ ++L+T + G+ + +SY+ L Sbjct: 1032 LDTTHPPATDDFVVNVDGTPVTVSNVTVNGSTVTLELATPVNNGETVTLSYTDPTAGDDL 1091 Query: 575 RPIQDLSGNNASTFSQYQVTNGV-----QSALTTIKDGT-LTGKTVLLNFNDTLQAVNPN 628 IQDL+GN+A++ VTN V +A T + T G +++L +++ L +P Sbjct: 1092 NAIQDLAGNDAASLLNSPVTNTVPVTPDTTAPTFVSAATSADGSSLVLTYDEPLDTTHPP 1151 Query: 629 AYSQFSVYADGYSLGTNAISSSGAKLNLSLDNAATNAQVIRVSYS---AGS--YPVADTN 683 A F V DG + + ++ +G+ + L L N + + +SY+ AG + D Sbjct: 1152 ATDDFVVNVDGTPITVSNVTVNGSTVTLELATPVNNGETVTLSYTDPTAGDDLNAIQDLA 1211 Query: 684 GQSVANFSDFYIRNS-GDNVPPVFQSAAGSGNKIVLTYNEGISSGSLPMNSQFSVLVGSK 742 G A+ + + N+ D + P A +VL E I+ + QFS V Sbjct: 1212 GNDAASLLNSPVTNTVPDTIAPTLNITA---TDLVLAAGEAIT-----VTFQFSEAVIDF 1263 Query: 743 PNYVTAVAAGG----TQV---------TLTLQSALAVNQP----TTVSYVPGTTGIADLN 785 V G TQV T T A +++ P T ++ PGT D Sbjct: 1264 VETDVVVTGGSLSAFTQVDDDTWTATFTQTGSDAPSISVPNGTFTDLAGNPGTGDTLDGT 1323 Query: 786 GNRAPYLNQQSVNISGTTVSDISSATITGDELLVTFNKTMQASSGLNANQFGVRFDGSTV 845 L ++ +S T +D SS +T DE L T + A F V DG+ V Sbjct: 1324 NGFMADLTPPAL-LSAATSADGSSLVLTYDEPLDTTHPPAIA-------DFVVNVDGTPV 1375 Query: 846 GIQSYYISGSTLKLTLSSVVKSGQTVDLSY 875 + + ++GST+ L L++ V +G+TV LSY Sbjct: 1376 TVSNVTVNGSTVTLELATPVNNGETVTLSY 1405 Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 118/450 (26%), Positives = 195/450 (43%), Gaps = 56/450 (12%) Query: 461 LDIANGAFVDANNSQVIYGGLSGKNAWSFQTYSLDKTAPVLKTALVD-NNRTIRLIYDEA 519 + + NG F D + L G N + D T P L +A N ++ L YDE Sbjct: 1962 ISVPNGTFTDLAGNPGTGDTLDGTNG-----FMADLTPPALLSAATSANGSSLVLTYDEP 2016 Query: 520 LKTEAALLPSSFAVTVNDEKRAIDSISIQGDSIYIKLSTGITVGQVIKVSYSG-----GL 574 L T F V V+ + ++++ G ++ ++L+T + G+ + +SY+ L Sbjct: 2017 LDTTHPPATDDFVVNVDGTPVTVSNVTVNGSTVTLELATPVNNGETVTLSYTDPTAGDDL 2076 Query: 575 RPIQDLSGNNASTFSQYQVTNGV-----QSALTTIKDGT-LTGKTVLLNFNDTLQAVNPN 628 IQDL+GN+A++ VTN V +A T + T G +++L +++ L +P Sbjct: 2077 NAIQDLAGNDAASLLNSPVTNTVPVTPDTTAPTFVSAATSADGSSLVLTYDEPLDTTHPP 2136 Query: 629 AYSQFSVYADGYSLGTNAISSSGAKLNLSLDNAATNAQVIRVSYS---AGS--YPVADTN 683 A F V DG + + ++ +G+ + L L N + + +SY+ AG + D Sbjct: 2137 ATDDFVVNVDGTPITVSNVTVNGSTVTLELATPVNNGETVTLSYTDPTAGDDLNAIQDLA 2196 Query: 684 GQSVANFSDFYIRNS-GDNVPPVFQSAAGSGNKIVLTYNEGISSGSLPMNSQFSVLVGSK 742 G A+ + + N+ D + P A +VL E I+ + QFS V Sbjct: 2197 GNDAASLLNSPVTNTVPDTIAPTLNITA---TDLVLAAGEAIT-----VTFQFSEAVIDF 2248 Query: 743 PNYVTAVAAGG----TQV---------TLTLQSALAVNQP----TTVSYVPGTTGIADLN 785 V G TQV T T A +++ P T ++ PGT D Sbjct: 2249 VETDVVVTGGSLSAFTQVDDDTWTATFTQTGSDAPSISVPNGTFTDLAGNPGTGDTLDGT 2308 Query: 786 GNRAPYLNQQSVNISGTTVSDISSATITGDELLVTFNKTMQASSGLNANQFGVRFDGSTV 845 L ++ +S T +D SS +T DE L T + A F V DG+ V Sbjct: 2309 NGFMADLTPPAL-LSAATSADGSSLVLTYDEPLDTTHPPAIA-------DFVVNVDGTPV 2360 Query: 846 GIQSYYISGSTLKLTLSSVVKSGQTVDLSY 875 + + ++GST+ L L++ V +G+TV LSY Sbjct: 2361 TVSNVTVNGSTVTLELATPVNNGETVTLSY 2390 Score = 82.4 bits (202), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 105/415 (25%), Positives = 186/415 (44%), Gaps = 49/415 (11%) Query: 495 DKTAPVLKTALVD-NNRTIRLIYDEALKTEAALLPSSFAVTVNDEKRAIDSISIQGDSIY 553 D TAP +A + ++ L YDE L T F V V+ + ++++ G ++ Sbjct: 683 DTTAPTFVSAATSADGSSLVLTYDEPLDTTHPPATDDFVVNVDGTPVTVSNVTVNGSTVT 742 Query: 554 IKLSTGITVGQVIKVSYSG-----GLRPIQDLSGNNASTFSQYQVTNGV-----QSALTT 603 ++L+T + G+ + +SY+ L IQDL+GN+A++ VTN V +A T Sbjct: 743 LELATPVNNGETVTLSYTDPTAGDDLNAIQDLAGNDAASLLNSPVTNTVPVTPDTTAPTF 802 Query: 604 IKDGT-LTGKTVLLNFNDTLQAVNPNAYSQFSVYADGYSLGTNAISSSGAKLNLSLDNAA 662 + T G +++L +++ L +P A F V DG + + ++ +G+ + L L Sbjct: 803 VSAATSADGSSLVLTYDEPLDTTHPPATDDFVVNVDGTPVTVSNVTVNGSTVTLELATPV 862 Query: 663 TNAQVIRVSYS---AGS--YPVADTNGQSVANFSDFYIRNS-GDNVPPVFQSAAGSGNKI 716 N + + +SY+ AG + D G A+ + + N+ D + P A + Sbjct: 863 NNGETVTLSYTDPTAGDDLNAIQDLAGNDAASLLNSPVTNTVPDTIAPTLNITA---TDL 919 Query: 717 VLTYNEGISSGSLPMNSQFSVLVGSKPNYVTAVAAGG----TQV---------TLTLQSA 763 VL E I+ + QFS V V G TQV T T A Sbjct: 920 VLAAGEAIT-----VTFQFSEAVIDFVETDVVVTGGSLSAFTQVDDDTWTATFTQTGSDA 974 Query: 764 LAVNQPT-TVSYVPGTTGIAD-LNGNRAPYLNQQSVNISGTTVSDISSAT-ITGDELLVT 820 +++ P T + + G G D L+G + + +S+AT G L++T Sbjct: 975 PSISVPNGTFTDLAGNPGTGDTLDGTNGFMADLTPPAL-------LSAATSANGSSLVLT 1027 Query: 821 FNKTMQASSGLNANQFGVRFDGSTVGIQSYYISGSTLKLTLSSVVKSGQTVDLSY 875 +++ + + + F V DG+ V + + ++GST+ L L++ V +G+TV LSY Sbjct: 1028 YDEPLDTTHPPATDDFVVNVDGTPVTVSNVTVNGSTVTLELATPVNNGETVTLSY 1082 Score = 82.4 bits (202), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 105/415 (25%), Positives = 186/415 (44%), Gaps = 49/415 (11%) Query: 495 DKTAPVLKTALVD-NNRTIRLIYDEALKTEAALLPSSFAVTVNDEKRAIDSISIQGDSIY 553 D TAP +A + ++ L YDE L T F V V+ + ++++ G ++ Sbjct: 1668 DTTAPTFVSAATSADGSSLVLTYDEPLDTTHPPATDDFVVNVDGTPVTVSNVTVNGSTVT 1727 Query: 554 IKLSTGITVGQVIKVSYSG-----GLRPIQDLSGNNASTFSQYQVTNGV-----QSALTT 603 ++L+T + G+ + +SY+ L IQDL+GN+A++ VTN V +A T Sbjct: 1728 LELATPVNNGETVTLSYTDPTAGDDLNAIQDLAGNDAASLLNSPVTNTVPVTPDTTAPTF 1787 Query: 604 IKDGT-LTGKTVLLNFNDTLQAVNPNAYSQFSVYADGYSLGTNAISSSGAKLNLSLDNAA 662 + T G +++L +++ L +P A F V DG + + ++ +G+ + L L Sbjct: 1788 VSAATSADGSSLVLTYDEPLDTTHPPATDDFVVNVDGTPVTVSNVTVNGSTVTLELATPV 1847 Query: 663 TNAQVIRVSYS---AGS--YPVADTNGQSVANFSDFYIRNS-GDNVPPVFQSAAGSGNKI 716 N + + +SY+ AG + D G A+ + + N+ D + P A + Sbjct: 1848 NNGETVTLSYTDPTAGDDLNAIQDLAGNDAASLLNSPVTNTVPDTIAPTLNITA---TDL 1904 Query: 717 VLTYNEGISSGSLPMNSQFSVLVGSKPNYVTAVAAGG----TQV---------TLTLQSA 763 VL E I+ + QFS V V G TQV T T A Sbjct: 1905 VLAAGEAIT-----VTFQFSEAVIDFVETDVVVTGGSLSAFTQVDDDTWTATFTQTGSDA 1959 Query: 764 LAVNQPT-TVSYVPGTTGIAD-LNGNRAPYLNQQSVNISGTTVSDISSAT-ITGDELLVT 820 +++ P T + + G G D L+G + + +S+AT G L++T Sbjct: 1960 PSISVPNGTFTDLAGNPGTGDTLDGTNGFMADLTPPAL-------LSAATSANGSSLVLT 2012 Query: 821 FNKTMQASSGLNANQFGVRFDGSTVGIQSYYISGSTLKLTLSSVVKSGQTVDLSY 875 +++ + + + F V DG+ V + + ++GST+ L L++ V +G+TV LSY Sbjct: 2013 YDEPLDTTHPPATDDFVVNVDGTPVTVSNVTVNGSTVTLELATPVNNGETVTLSY 2067 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 63/190 (33%), Positives = 95/190 (50%), Gaps = 14/190 (7%) Query: 700 DNVPPVFQSAAGS--GNKIVLTYNEGISSGSLPMNSQFSVLVGSKPNYVTAVAAGGTQVT 757 D P F SAA S G+ +VLTY+E + + P F V V P V+ V G+ VT Sbjct: 344 DTTAPTFVSAATSIDGSSLVLTYDEPLDTTHPPATDDFVVNVDGTPVTVSNVTVNGSTVT 403 Query: 758 LTLQSALAVNQPTTVSYVPGTTG-----IADLNGNRA------PYLNQQSVNISGTTVSD 806 L L + + + T+SY T G I DL GN A P N V T + Sbjct: 404 LELATPVNNGETVTLSYTDPTAGDDLNAIQDLAGNDAASLLNSPVTNTVPVTPDTTAPTF 463 Query: 807 ISSAT-ITGDELLVTFNKTMQASSGLNANQFGVRFDGSTVGIQSYYISGSTLKLTLSSVV 865 +S+AT G L++T+++ + + + F V DG+ V + + ++GST+ L L++ V Sbjct: 464 VSAATSADGSSLVLTYDEPLDTTHPPATDDFVVNVDGTPVTVSNVTVNGSTVTLELATPV 523 Query: 866 KSGQTVDLSY 875 +G+TV LSY Sbjct: 524 NNGETVTLSY 533 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 82/172 (47%), Gaps = 15/172 (8%) Query: 461 LDIANGAFVDANNSQVIYGGLSGKNAWSFQTYSLDKTAPVLKTALVD-NNRTIRLIYDEA 519 + + NG F D + L G N + D T P L +A + ++ L YDE Sbjct: 2285 ISVPNGTFTDLAGNPGTGDTLDGTNG-----FMADLTPPALLSAATSADGSSLVLTYDEP 2339 Query: 520 LKTEAALLPSSFAVTVNDEKRAIDSISIQGDSIYIKLSTGITVGQVIKVSYSG-----GL 574 L T + F V V+ + ++++ G ++ ++L+T + G+ + +SY+ L Sbjct: 2340 LDTTHPPAIADFVVNVDGTPVTVSNVTVNGSTVTLELATPVNNGETVTLSYTDPTAGDDL 2399 Query: 575 RPIQDLSGNNASTFSQYQVTNGVQSALTTIKDGTLTGKTVLLNFNDTLQAVN 626 IQDL+GN+A++ VTN V + LT I + + ++N N T AVN Sbjct: 2400 NAIQDLAGNDAASLLNSPVTNTVIAPLTAINN----TEVAMVNINTTSAAVN 2447 >ref|ZP_00061713.1| hypothetical protein [Clostridium thermocellum ATCC 27405] Length = 710 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 53/182 (29%), Positives = 93/182 (51%), Gaps = 11/182 (6%) Query: 1156 FTDMNTHWSKAIVSQLAAKNIIDSSYGSTFKPEQKITRAEFAVMXXXXXXXXXXXETAQR 1215 F D+ HW++ +++LAA+N++ + KP+ +ITRAE AV+ + + Sbjct: 521 FNDIAGHWAEEFIAKLAARNVVSGYPDGSVKPDIEITRAEMAVIVVKSAGLEPVENVSLK 580 Query: 1216 FRDVQ--PSTQTGDYXXXXXXXXXXXXNTDATFRPNDNITREQLAIMIIRAMEYTGRPIT 1273 F+D P+ G Y D TFRP+ N+TRE++ ++I++A E+ Sbjct: 581 FKDADQIPAWAAG-YVQAGVEAGIIAGYEDNTFRPSRNLTREEMVVLIMKAYEF------ 633 Query: 1274 LNGTSATALVAFKDRSKIQNQAAEFVAKAVQQGIILGMTTTEFQPQGNATRAQAAVMLQR 1333 G +F D S+I + + FV KAV+ G ++G F+P+ + TRA+A +L + Sbjct: 634 --GAVENPEFSFIDASEIGDWSKPFVGKAVELGFVVGYPDNTFKPKKSVTRAEAFTVLWK 691 Query: 1334 ML 1335 + Sbjct: 692 AI 693 >gb|EAK20455.1| unknown [environmental sequence] Length = 577 Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 91/304 (29%), Positives = 149/304 (49%), Gaps = 30/304 (9%) Query: 191 SADNTLVQEFKFRDGEPNVNVQTDGTTTS-VSMTLASKLNPGSTYYVLIDNYALKDDENR 249 ++DN+ V+ G Q G+ TS +++T +S + + YYVLID A D ++ Sbjct: 290 TSDNSTVETISVTSG------QVSGSGTSQITVTPSSDFDGSTEYYVLIDATAFDDVDSG 343 Query: 250 TFSGVSSGSMWSFTAKSTGVGANVS-PAGGSTGVNPTSDLQLGFDRPMMPNAGVISLTPA 308 ++G+SS + SFT +T + S PA +T V S + L F+ + +G I++ Sbjct: 344 DYAGISSTTALSFTTANTVPTLSSSVPADNATSVAADSTIVLNFNESVDAESGNITIKKT 403 Query: 309 NNPGGTRYFNVNSTAVTGGGTPTITIDAASEANPLLEKTMYTVTVPQGAFHD-QDGNLFP 367 ++ +V S VTG GT IT+ +S+ + T Y V + AF D + G+ Sbjct: 404 SDNSTVETIDVTSGQVTGSGTSQITVTPSSDFDA---STEYYVLIDATAFDDSESGSYAG 460 Query: 368 ASGPLTWSYTTSEVKGFGIEALS---PADRSESVSLNPPIKITFNRNVVLNNAVAGPVIL 424 S S+TT+ + LS PAD + SV+L+ I + F+ +V +A +G + + Sbjct: 461 ISSTTALSFTTAN----AVPTLSSSVPADNATSVALDSTIVLNFSESV---DAESGNITI 513 Query: 425 YKGDGTKLESTLSV------GSSAKEFIVTPAAAFDNNTTYYLDIANGAFVDANNSQVIY 478 K G T+ V GS + VTP++ FD+ T YY+ I AF DA++ Y Sbjct: 514 KKTSGNSTVETIDVTSGQVTGSGTSQITVTPSSDFDSGTEYYVLIDATAFDDADSGS--Y 571 Query: 479 GGLS 482 G+S Sbjct: 572 AGIS 575 Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 75/264 (28%), Positives = 119/264 (45%), Gaps = 26/264 (9%) Query: 275 PAGGSTGVNPTSDLQLGFDRPMMPNAGVISLTPANNPGGTRYFNVNSTAVTGGGTPTITI 334 PA +T V S + L F + +G I++ ++ +V S V+G GT IT+ Sbjct: 257 PADNATSVAVDSTIVLNFSESVDAESGNITIKKTSDNSTVETISVTSGQVSGSGTSQITV 316 Query: 335 DAASEANPLLEKTMYTVTVPQGAFHDQD-GNLFPASGPLTWSYTTSEVKGFGIEALS--- 390 +S+ + T Y V + AF D D G+ S S+TT+ + LS Sbjct: 317 TPSSDFDG---STEYYVLIDATAFDDVDSGDYAGISSTTALSFTTANT----VPTLSSSV 369 Query: 391 PADRSESVSLNPPIKITFNRNVVLNNAVAGPVILYKGDGTKLESTLSV------GSSAKE 444 PAD + SV+ + I + FN +V +A +G + + K T+ V GS + Sbjct: 370 PADNATSVAADSTIVLNFNESV---DAESGNITIKKTSDNSTVETIDVTSGQVTGSGTSQ 426 Query: 445 FIVTPAAAFDNNTTYYLDIANGAFVDANNSQVIYGGLSGKNAWSFQTY----SLDKTAPV 500 VTP++ FD +T YY+ I AF D+ + Y G+S A SF T +L + P Sbjct: 427 ITVTPSSDFDASTEYYVLIDATAFDDSESGS--YAGISSTTALSFTTANAVPTLSSSVPA 484 Query: 501 LKTALVDNNRTIRLIYDEALKTEA 524 V + TI L + E++ E+ Sbjct: 485 DNATSVALDSTIVLNFSESVDAES 508 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.311 0.127 0.350 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 1,759,842,165 Number of extensions: 72247974 Number of successful extensions: 149992 Number of sequences better than 1.0e-05: 119 Number of HSP's gapped: 149664 Number of HSP's successfully gapped: 169 Length of query: 1341 Length of database: 757,237,578 Length adjustment: 138 Effective length of query: 1203 Effective length of database: 382,553,916 Effective search space: 460212360948 Effective search space used: 460212360948 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 132 (55.5 bits)