BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0327.0017.p
         (87 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_00061924.1| hypothetical protein [Clostridium thermocellu...    57   1e-07

>ref|ZP_00061924.1| hypothetical protein [Clostridium thermocellum ATCC 27405]
          Length = 165

 Score = 57.4 bits (137), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 49/88 (55%), Gaps = 6/88 (6%)

Query: 3   VDVKPGQTLFGSAGAEFIVRAGKAVIFSEAANGVADLTDGK--DLADGQAAPMNHLLSFP 60
           +++  GQ L   A AE I+R GKA+       G++D+T G   D+      P+NHLL   
Sbjct: 81  LELTKGQVLIAGASAELILRGGKALAIGGEGGGLSDITSGTGADVNTDDEVPLNHLLLVS 140

Query: 61  R-DGRGIKVQDGQTLRLVVMVRGRYTLK 87
           R DGRG+KV   +     V+V+G YT+K
Sbjct: 141 RDDGRGLKVTSEKAW---VLVKGPYTIK 165


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.321    0.139    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 119,081,567
Number of extensions: 3913957
Number of successful extensions: 8342
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 8341
Number of HSP's successfully gapped: 1
Length of query: 87
Length of database: 757,237,578
Length adjustment: 56
Effective length of query: 31
Effective length of database: 605,192,034
Effective search space: 18760953054
Effective search space used: 18760953054
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 120 (50.8 bits)