BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0322.0003.p (164 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00087676.1| COG0454: Histone acetyltransferase HPA2 and r... 65 6e-10 ref|NP_977694.1| acetyltransferase, GNAT family [Bacillus cereus... 61 9e-09 ref|NP_418940.1| hypothetical protein [Caulobacter crescentus CB... 60 2e-08 ref|NP_241962.1| BH1096~unknown [Bacillus halodurans] >gi|254896... 59 4e-08 ref|NP_655156.1| Acetyltransf, Acetyltransferase (GNAT) family [... 56 3e-07 >ref|ZP_00087676.1| COG0454: Histone acetyltransferase HPA2 and related acetyltransferases [Pseudomonas fluorescens PfO-1] Length = 167 Score = 65.1 bits (157), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 41/118 (34%), Positives = 62/118 (52%), Gaps = 7/118 (5%) Query: 40 VQNIWWEKPGCLYPFLIRADGRPAGFALVATPPHC-AKGVDYFMNDFFVLQPYRGQGYAQ 98 +++ +W +P PFLI DG AGF V H +G DY + FFV + +RGQG AQ Sbjct: 46 LKDDYWRQPAT-RPFLIHVDGELAGF--VTVDDHLLIEGADYNIGYFFVSRRWRGQGVAQ 102 Query: 99 QAALQVFGRFAGVWELFTNPAAKNVIGQKFWRKTVSDYTNGIYEEKAGDTFDGYKLSF 156 A + G W++F A N+ Q+FW + + + + G + + G T DGY +F Sbjct: 103 FVASALLSHLPGRWQIFHVDA--NLPAQRFWARLIPELSGGDFTRQTG-TVDGYPCTF 157 >ref|NP_977694.1| acetyltransferase, GNAT family [Bacillus cereus ATCC 10987] gb|AAS40302.1| acetyltransferase, GNAT family [Bacillus cereus ATCC 10987] Length = 162 Score = 61.2 bits (147), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 39/131 (29%), Positives = 59/131 (45%), Gaps = 17/131 (12%) Query: 2 LYLHDLSGHYGLTDGPVLNEHGIFEDSPEVRTLAEQYDVQNIWWEKPGCLYPFLIRADGR 61 LYLHDLS T + +G FE Y+ +++W G + P+ I++D Sbjct: 22 LYLHDLST---FTSNITIGANGFFE-----------YEDLHMFWVNDG-ITPYFIKSDNE 66 Query: 62 PAGFALVATPPHCAKGVDYFMNDFFVLQPYRGQGYAQQAALQVFGRFAGVWELFTNPAAK 121 GF L+ P K D+ +ND F+L Y+G+G +Q + G + F K Sbjct: 67 IVGFLLLLERPFLKKENDFGINDIFILNQYKGKGIGKQVIESLLKEKRGQY--FVIELVK 124 Query: 122 NVIGQKFWRKT 132 NV FW+K Sbjct: 125 NVPAVSFWKKV 135 >ref|NP_418940.1| hypothetical protein [Caulobacter crescentus CB15] pir||H87263 hypothetical protein CC0121 [imported] - Caulobacter crescentus gb|AAK22108.1| hypothetical protein [Caulobacter crescentus CB15] Length = 151 Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 49/159 (30%), Positives = 71/159 (44%), Gaps = 15/159 (9%) Query: 2 LYLHDLSGHYGLTDGPVLNEHGIFEDSPEVRTLAEQYDVQNIWWEKPGCLYPFLIRADGR 61 YLHD S + D V E G P+ R Y +W P +L R G Sbjct: 3 FYLHDFSELW--FDRAVEGELG-----PDGRY--SGYPGLETYWRDP-VREAWLFRIGGL 52 Query: 62 PAGFALVATPPHCAKGVDYFMNDFFVLQPYRGQGYAQQAALQVFGRFAGVWELFTNPAAK 121 P GFALV H +D + +FFV++ +R +G AA +FG GVW+ T + Sbjct: 53 PVGFALVNDLAHSPTPIDRAVAEFFVVRKHRRRGVGLAAAHALFGSAWGVWQAAT--VRR 110 Query: 122 NVIGQKFWRKTVSDY---TNGIYEEKAGDTFDGYKLSFR 157 N + FWR+ Y + + E++ +DG L+FR Sbjct: 111 NTAARAFWRRVAETYPGVRDVVEEDRQDARWDGAVLTFR 149 >ref|NP_241962.1| BH1096~unknown [Bacillus halodurans] pir||H83786 hypothetical protein BH1096 [imported] - Bacillus halodurans (strain C-125) dbj|BAB04815.1| BH1096~unknown [Bacillus halodurans] Length = 162 Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 46/146 (31%), Positives = 67/146 (45%), Gaps = 24/146 (16%) Query: 2 LYLHDLSGHYGLTDGPVLNEHGIFEDSPEVRTLAEQYDVQNIWWEKPGCLYPFLIRADGR 61 LYLHDLS + + + G FE ++ + +WE G L P+ I D Sbjct: 22 LYLHDLSKFTSMIE---IGADGFFE-----------FEGLDKFWEVDG-LSPYFILLDDN 66 Query: 62 PAGFALVATPPHCAKGVDYFMNDFFVLQPYRGQGYAQQAALQVFGRFAG---VWELFTNP 118 GF L+ P K D+ +ND F+L Y+G G ++A ++F G V EL N Sbjct: 67 IIGFILLLERPFLQKESDFGINDIFILNKYKGNGMGRKAIKKIFCEKQGKYFVIELIENR 126 Query: 119 AAKNVIGQKFWRKTVSDYTNGIYEEK 144 A + FW+K +D N YEE+ Sbjct: 127 PAIS-----FWKKIYND-LNIQYEER 146 >ref|NP_655156.1| Acetyltransf, Acetyltransferase (GNAT) family [Bacillus anthracis A2012] ref|NP_843736.1| acetyltransferase, GNAT family [Bacillus anthracis str. Ames] gb|AAP25222.1| acetyltransferase, GNAT family [Bacillus anthracis str. Ames] Length = 163 Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 38/131 (29%), Positives = 58/131 (44%), Gaps = 17/131 (12%) Query: 2 LYLHDLSGHYGLTDGPVLNEHGIFEDSPEVRTLAEQYDVQNIWWEKPGCLYPFLIRADGR 61 LYLHDLS T + +G FE ++ +++W G + P+ I+ D Sbjct: 22 LYLHDLST---FTPHITIGANGFFE-----------FEDLHMFWVNDG-ITPYFIKGDND 66 Query: 62 PAGFALVATPPHCAKGVDYFMNDFFVLQPYRGQGYAQQAALQVFGRFAGVWELFTNPAAK 121 GF L+ P K D+ ++D F+L Y+G+G +Q V G + F K Sbjct: 67 IVGFLLLLERPFLKKENDFSIHDIFILNQYKGKGIGKQVIKNVLKEKRGQY--FVIELVK 124 Query: 122 NVIGQKFWRKT 132 NV FW+K Sbjct: 125 NVPAVSFWKKV 135 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.323 0.142 0.460 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 289,775,691 Number of extensions: 11940702 Number of successful extensions: 19892 Number of sequences better than 1.0e-05: 6 Number of HSP's gapped: 19895 Number of HSP's successfully gapped: 6 Length of query: 164 Length of database: 757,237,578 Length adjustment: 116 Effective length of query: 48 Effective length of database: 442,286,094 Effective search space: 21229732512 Effective search space used: 21229732512 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 121 (51.2 bits)