BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0320.0019.p
         (338 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_00097244.1| COG1396: Predicted transcriptional regulators...    67   5e-10
ref|ZP_00097790.1| COG1396: Predicted transcriptional regulators...    67   8e-10
ref|ZP_00046977.1| COG1396: Predicted transcriptional regulators...    61   5e-08
ref|NP_721203.1| conserved hypothetical protein [Streptococcus m...    60   7e-08
ref|NP_964256.1| hypothetical protein LJ0240 [Lactobacillus john...    60   9e-08

>ref|ZP_00097244.1| COG1396: Predicted transcriptional regulators [Desulfitobacterium
           hafniense]
          Length = 361

 Score = 67.0 bits (162), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 70/144 (48%), Gaps = 5/144 (3%)

Query: 1   LNIEIGKKIKTLRLQKGMTQEQLAVKLNMSSQAVSKWENNVTMPDIQILPDLSVILGVTI 60
           + +++GK I   R +K  TQEQLA  + +S+ AVSKWE   T PDI +LP ++  L  T+
Sbjct: 1   MELDMGKVITAKRKEKSWTQEQLAQAVGVSTPAVSKWETGATYPDITLLPPIARALNTTV 60

Query: 61  DELFALTDDVQLERIGNMISNEQFISEDD-----FNYAEQFLIEKMNDDSQKSPCLTLLA 115
           DELF+  +++    +         + E +     + Y ++ L E  N    K     L  
Sbjct: 61  DELFSYQNELSDNEVSGFTQKATSLYEAEGFDAGWKYCQKLLQEFPNSIPLKFYLGNLFQ 120

Query: 116 QLHIHRSDEHREWAARYAKEALIL 139
              I + D  +E    Y ++A IL
Sbjct: 121 SFMIMKIDLGKEDIQSYYRQAAIL 144


>ref|ZP_00097790.1| COG1396: Predicted transcriptional regulators [Desulfitobacterium
          hafniense]
          Length = 182

 Score = 66.6 bits (161), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 32/64 (50%), Positives = 44/64 (68%)

Query: 4  EIGKKIKTLRLQKGMTQEQLAVKLNMSSQAVSKWENNVTMPDIQILPDLSVILGVTIDEL 63
          E+ K I   R +KG TQE+LA KL ++ QAVSKWE + T+PDI +LP LS +L ++ID+L
Sbjct: 4  ELAKNICRYRKEKGFTQEELARKLGVTFQAVSKWETSQTLPDITLLPGLSQLLDISIDKL 63

Query: 64 FALT 67
              
Sbjct: 64 LGFV 67


>ref|ZP_00046977.1| COG1396: Predicted transcriptional regulators [Lactobacillus
           gasseri]
          Length = 334

 Score = 60.8 bits (146), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 42/113 (37%), Positives = 63/113 (55%), Gaps = 6/113 (5%)

Query: 3   IEIGKKIKTLRLQKGMTQEQLAVKLNMSSQAVSKWENNVTMPDIQILPDLSVILGVTIDE 62
           + +G+KI  LR +  ++QE LA K+N+S QAVSKWE+  ++PDI+ + +LS + GVT D 
Sbjct: 1   MRLGQKIADLRKKNNLSQEGLAEKMNVSRQAVSKWESEQSIPDIEKIVNLSELFGVTTDY 60

Query: 63  LFALTDDVQLERIGNMISNEQFISEDDFNYAEQFLIEKMNDDSQKSPCLTLLA 115
           L   + +   E     + NE    +D        L++K    SQKS  L  LA
Sbjct: 61  LLK-SGEPSFE-----LKNEDINDKDKLPVLSDELVKKYLAASQKSSKLRALA 107


>ref|NP_721203.1| conserved hypothetical protein [Streptococcus mutans UA159]
 gb|AAN58509.1| conserved hypothetical protein [Streptococcus mutans UA159]
          Length = 79

 Score = 60.1 bits (144), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 30/72 (41%), Positives = 49/72 (68%), Gaps = 1/72 (1%)

Query: 5  IGKKIKTLRLQKGMTQEQLAVKLNMSSQAVSKWENNVTMPDIQILPDLSVILGVTIDELF 64
          +G  I +LR +KGMTQ +LA K+ ++ +AVSKWE +++ PDI  +P L+ I  V++D+L 
Sbjct: 6  LGMIISSLRKEKGMTQLELAEKMRVTDKAVSKWERDLSFPDINSIPKLAEIFEVSVDDLM 65

Query: 65 ALTDDVQLERIG 76
           +  + + E IG
Sbjct: 66 QVKTNTK-ETIG 76


>ref|NP_964256.1| hypothetical protein LJ0240 [Lactobacillus johnsonii NCC 533]
 gb|AAS08222.1| hypothetical protein LJ0240 [Lactobacillus johnsonii NCC 533]
          Length = 341

 Score = 59.7 bits (143), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 46/63 (73%)

Query: 1  LNIEIGKKIKTLRLQKGMTQEQLAVKLNMSSQAVSKWENNVTMPDIQILPDLSVILGVTI 60
          +++ +G+KI  LR +  ++QE LA K+N+S QAVSKWE++ ++PDI+ +  LS + GVT 
Sbjct: 15 IHMRLGQKITELRKKNNLSQEGLAEKMNVSRQAVSKWESDQSIPDIEKIVSLSELFGVTT 74

Query: 61 DEL 63
          D L
Sbjct: 75 DYL 77


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.319    0.134    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 505,060,969
Number of extensions: 20296473
Number of successful extensions: 53979
Number of sequences better than 1.0e-05: 42
Number of HSP's gapped: 54137
Number of HSP's successfully gapped: 42
Length of query: 338
Length of database: 757,237,578
Length adjustment: 126
Effective length of query: 212
Effective length of database: 415,135,104
Effective search space: 88008642048
Effective search space used: 88008642048
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)