BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0320.0013.p
         (88 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_978241.1| conserved hypothetical protein [Bacillus cereus...    97   8e-20
ref|NP_831544.1| hypothetical protein [Bacillus cereus ATCC 1457...    97   9e-20
ref|NP_844256.1| conserved hypothetical protein [Bacillus anthra...    96   3e-19
ref|NP_655703.1| hypothetical protein predicted by GeneMark [Bac...    96   4e-19
ref|NP_390567.1| similar to hypothetical proteins from B. subtil...    89   3e-17

>ref|NP_978241.1| conserved hypothetical protein [Bacillus cereus ATCC 10987]
 gb|AAS40849.1| conserved hypothetical protein [Bacillus cereus ATCC 10987]
          Length = 87

 Score = 97.4 bits (241), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 45/87 (51%), Positives = 60/87 (68%)

Query: 1  MKYVNADIVLPEDLLKEVQKYIHGGMLYVPKPEGIKAKWGENSGGRAYLTHRNNEIRKQY 60
          MKYV A  VLPE L+ E+QKYI G  +Y+PK E  + KWG  SGGR  L  RN  I++ +
Sbjct: 1  MKYVKAATVLPESLIVEIQKYIQGETIYIPKQETKRYKWGTRSGGRKQLDERNKAIKEAF 60

Query: 61 RAGLGIEHLAEQFCLSCDSIKKIVYGK 87
          ++G+ I  LAE++ LS ++IKKIVY K
Sbjct: 61 KSGIAIHQLAEEYFLSGETIKKIVYSK 87


>ref|NP_831544.1| hypothetical protein [Bacillus cereus ATCC 14579]
 gb|AAP08745.1| hypothetical protein [Bacillus cereus ATCC 14579]
          Length = 87

 Score = 97.4 bits (241), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 45/87 (51%), Positives = 60/87 (68%)

Query: 1  MKYVNADIVLPEDLLKEVQKYIHGGMLYVPKPEGIKAKWGENSGGRAYLTHRNNEIRKQY 60
          MKYV A+ VLPE L+ E+QKYI G  +Y+PK E    KWG  SGGR  L  RN  I++ +
Sbjct: 1  MKYVKANAVLPESLITEIQKYIQGETIYIPKQETKHYKWGTRSGGRKQLDERNKAIKEAF 60

Query: 61 RAGLGIEHLAEQFCLSCDSIKKIVYGK 87
          ++G+ I  LAE++ LS ++IKKIVY K
Sbjct: 61 KSGIAIHQLAEEYFLSGETIKKIVYSK 87


>ref|NP_844256.1| conserved hypothetical protein [Bacillus anthracis str. Ames]
 gb|AAP25742.1| conserved hypothetical protein [Bacillus anthracis str. Ames]
          Length = 87

 Score = 95.9 bits (237), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 45/87 (51%), Positives = 58/87 (66%)

Query: 1  MKYVNADIVLPEDLLKEVQKYIHGGMLYVPKPEGIKAKWGENSGGRAYLTHRNNEIRKQY 60
          MKYV A  VLPE L+ E+QKYI G  +Y+PK E    KWG  SGGR  L  RN  I+  +
Sbjct: 1  MKYVKAKAVLPESLITEIQKYIQGETIYIPKQETKHYKWGTRSGGRKQLDERNKAIKDAF 60

Query: 61 RAGLGIEHLAEQFCLSCDSIKKIVYGK 87
          ++G+ I  LAE++ LS ++IKKIVY K
Sbjct: 61 KSGISIHQLAEEYFLSGETIKKIVYSK 87


>ref|NP_655703.1| hypothetical protein predicted by GeneMark [Bacillus anthracis
          A2012]
          Length = 87

 Score = 95.5 bits (236), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 45/87 (51%), Positives = 58/87 (66%)

Query: 1  MKYVNADIVLPEDLLKEVQKYIHGGMLYVPKPEGIKAKWGENSGGRAYLTHRNNEIRKQY 60
          MKYV A  VLPE L+ E+QKYI G  +Y+PK E    KWG  SGGR  L  RN  I+  +
Sbjct: 1  MKYVKAKAVLPESLITEIQKYIQGETIYIPKQETKHYKWGTRSGGRKQLDXRNKAIKDAF 60

Query: 61 RAGLGIEHLAEQFCLSCDSIKKIVYGK 87
          ++G+ I  LAE++ LS ++IKKIVY K
Sbjct: 61 KSGISIHQLAEEYFLSGETIKKIVYSK 87


>ref|NP_390567.1| similar to hypothetical proteins from B. subtilis [Bacillus
          subtilis]
 pir||D69971 conserved hypothetical protein yraL - Bacillus subtilis
 gb|AAB80881.1| YraL [Bacillus subtilis]
 emb|CAA63454.1| unknown [Bacillus subtilis]
 emb|CAB14631.1| yraL [Bacillus subtilis subsp. subtilis str. 168]
          Length = 87

 Score = 89.4 bits (220), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 40/87 (45%), Positives = 56/87 (64%)

Query: 1  MKYVNADIVLPEDLLKEVQKYIHGGMLYVPKPEGIKAKWGENSGGRAYLTHRNNEIRKQY 60
          M YV A  +LPE L+ E+QKY+ G  +Y+PKPE    KWG  SG R  +  RN  I+K +
Sbjct: 1  MAYVKATAILPEKLISEIQKYVQGKTIYIPKPESSHQKWGACSGTRKLIDDRNASIKKAF 60

Query: 61 RAGLGIEHLAEQFCLSCDSIKKIVYGK 87
          + G  I  L++++ LS ++IKKIVY K
Sbjct: 61 KNGKTIHQLSDEYHLSIETIKKIVYSK 87


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.318    0.139    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 149,724,509
Number of extensions: 5973120
Number of successful extensions: 12443
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 12443
Number of HSP's successfully gapped: 7
Length of query: 88
Length of database: 757,237,578
Length adjustment: 57
Effective length of query: 31
Effective length of database: 602,476,935
Effective search space: 18676784985
Effective search space used: 18676784985
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 120 (50.8 bits)