BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0320.0009.p
         (163 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_814071.1| HD domain protein [Enterococcus faecalis V583] ...    95   5e-19
ref|NP_831916.1| metal-dependent phosphohydrolase [Bacillus cere...    87   1e-16
ref|NP_844558.1| HD domain protein [Bacillus anthracis str. Ames...    86   4e-16
ref|NP_978536.1| HD domain protein [Bacillus cereus ATCC 10987] ...    86   4e-16
ref|NP_656018.1| HD, HD domain [Bacillus anthracis A2012]              86   4e-16

>ref|NP_814071.1| HD domain protein [Enterococcus faecalis V583]
 gb|AAO80142.1| HD domain protein [Enterococcus faecalis V583]
          Length = 224

 Score = 95.1 bits (235), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 45/85 (52%), Positives = 55/85 (64%)

Query: 35  LGQDTTGHDWFHTDRVRNMAGLIAEMEQADVFVCTLAALLHDVADEKLNPSKEAGLQKVH 94
           L  + +GHDW+H  RV  +A  IAE EQA++F+C L ALLHD+ DEK N S+EAGL KV 
Sbjct: 26  LANEASGHDWWHIYRVTQLAKTIAEKEQANLFLCILTALLHDIGDEKFNESEEAGLLKVQ 85

Query: 95  SWLAGHLGDEGQIRHILQIIETMSF 119
            WL  +     Q  HIL II  MSF
Sbjct: 86  QWLEANNVSTEQTNHILSIIANMSF 110


>ref|NP_831916.1| metal-dependent phosphohydrolase [Bacillus cereus ATCC 14579]
 gb|AAP09117.1| metal-dependent phosphohydrolase [Bacillus cereus ATCC 14579]
          Length = 215

 Score = 87.4 bits (215), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 43/85 (50%), Positives = 59/85 (69%)

Query: 35  LGQDTTGHDWFHTDRVRNMAGLIAEMEQADVFVCTLAALLHDVADEKLNPSKEAGLQKVH 94
           L +D +GHDW+H +RV  MA  ++E E  + F+  +AALLHDVADEKLN S+EAG++KV 
Sbjct: 18  LEKDASGHDWYHIERVHKMAISLSEQEGGNRFIIEMAALLHDVADEKLNESEEAGMKKVS 77

Query: 95  SWLAGHLGDEGQIRHILQIIETMSF 119
            WL     +E + +HIL II  MS+
Sbjct: 78  DWLEELRVEEEESKHILHIIANMSY 102


>ref|NP_844558.1| HD domain protein [Bacillus anthracis str. Ames]
 gb|AAP26044.1| HD domain protein [Bacillus anthracis str. Ames]
          Length = 215

 Score = 85.5 bits (210), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 41/85 (48%), Positives = 59/85 (69%)

Query: 35  LGQDTTGHDWFHTDRVRNMAGLIAEMEQADVFVCTLAALLHDVADEKLNPSKEAGLQKVH 94
           L +D +GHDW+H +RV  +A  ++E E  + F+  +AALLHDVADEKLN S+EAG++KV 
Sbjct: 18  LEKDASGHDWYHIERVHKLAISLSEQEGGNRFIIEMAALLHDVADEKLNESEEAGMKKVS 77

Query: 95  SWLAGHLGDEGQIRHILQIIETMSF 119
            WL     +E + +H+L II  MS+
Sbjct: 78  DWLEELHVEEEESKHVLHIIANMSY 102


>ref|NP_978536.1| HD domain protein [Bacillus cereus ATCC 10987]
 gb|AAS41144.1| HD domain protein [Bacillus cereus ATCC 10987]
          Length = 215

 Score = 85.5 bits (210), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 41/85 (48%), Positives = 59/85 (69%)

Query: 35  LGQDTTGHDWFHTDRVRNMAGLIAEMEQADVFVCTLAALLHDVADEKLNPSKEAGLQKVH 94
           L +D +GHDW+H +RV  +A  ++E E  + F+  +AALLHDVADEKLN S+EAG++KV 
Sbjct: 18  LEKDASGHDWYHIERVHKLAISLSEQEGGNRFIIEMAALLHDVADEKLNESEEAGMKKVS 77

Query: 95  SWLAGHLGDEGQIRHILQIIETMSF 119
            WL     +E + +H+L II  MS+
Sbjct: 78  DWLEELHVEEEESKHVLHIIANMSY 102


>ref|NP_656018.1| HD, HD domain [Bacillus anthracis A2012]
          Length = 215

 Score = 85.5 bits (210), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 41/85 (48%), Positives = 59/85 (69%)

Query: 35  LGQDTTGHDWFHTDRVRNMAGLIAEMEQADVFVCTLAALLHDVADEKLNPSKEAGLQKVH 94
           L +D +GHDW+H +RV  +A  ++E E  + F+  +AALLHDVADEKLN S+EAG++KV 
Sbjct: 18  LEKDASGHDWYHIERVHKLAISLSEQEGGNRFIIEMAALLHDVADEKLNESEEAGMKKVS 77

Query: 95  SWLAGHLGDEGQIRHILQIIETMSF 119
            WL     +E + +H+L II  MS+
Sbjct: 78  DWLEELHVEEEESKHVLHIIANMSY 102


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.320    0.134    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 158,229,175
Number of extensions: 5414076
Number of successful extensions: 8158
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 8167
Number of HSP's successfully gapped: 14
Length of query: 163
Length of database: 757,237,578
Length adjustment: 116
Effective length of query: 47
Effective length of database: 442,286,094
Effective search space: 20787446418
Effective search space used: 20787446418
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 121 (51.2 bits)