BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0320.0008.p
         (66 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_243701.1| BH2835~unknown conserved protein [Bacillus halo...    79   2e-14
ref|NP_814071.1| HD domain protein [Enterococcus faecalis V583] ...    75   5e-13
ref|ZP_00150451.1| hypothetical protein Daro258701 [Dechloromona...    71   7e-12
ref|NP_735368.1| Unknown [Streptococcus agalactiae NEM316] >gi|2...    70   1e-11
ref|NP_687922.1| HD domain protein [Streptococcus agalactiae 260...    70   1e-11

>ref|NP_243701.1| BH2835~unknown conserved protein [Bacillus halodurans]
 pir||C84004 hypothetical protein BH2835 [imported] - Bacillus halodurans
           (strain C-125)
 dbj|BAB06554.1| BH2835~unknown conserved protein [Bacillus halodurans]
          Length = 215

 Score = 79.3 bits (194), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 36/54 (66%), Positives = 44/54 (81%), Gaps = 1/54 (1%)

Query: 3   KEYRDYSKGTAVNHFYEKLLKLKDLMNTPYGRKLAEERHAFMESFLEQFYKEWN 56
           +EYR + K TA+NHFYEKL KLKDLMNT  G++LA+ERH FME F+E+F  EWN
Sbjct: 160 EEYR-HGKSTAINHFYEKLFKLKDLMNTETGKQLAKERHVFMEQFIERFLSEWN 212


>ref|NP_814071.1| HD domain protein [Enterococcus faecalis V583]
 gb|AAO80142.1| HD domain protein [Enterococcus faecalis V583]
          Length = 224

 Score = 75.1 bits (183), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 36/55 (65%), Positives = 46/55 (83%), Gaps = 1/55 (1%)

Query: 2   QKEYRDYSKGTAVNHFYEKLLKLKDLMNTPYGRKLAEERHAFMESFLEQFYKEWN 56
           Q+EYR+  + TA+ HFYEKLLKLK+ MNT YGR LAE+RH FME +LE+FY+EW+
Sbjct: 168 QEEYRN-GEDTAIMHFYEKLLKLKEQMNTNYGRLLAEKRHQFMELYLEEFYQEWD 221


>ref|ZP_00150451.1| hypothetical protein Daro258701 [Dechloromonas aromatica RCB]
          Length = 61

 Score = 71.2 bits (173), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 32/48 (66%), Positives = 36/48 (75%)

Query: 9  SKGTAVNHFYEKLLKLKDLMNTPYGRKLAEERHAFMESFLEQFYKEWN 56
          SKG ++NHFYEKL  LK+ MNTP GR LAE RH FME F+ QF  EWN
Sbjct: 11 SKGASLNHFYEKLFLLKERMNTPTGRALAEPRHQFMEDFVAQFLAEWN 58


>ref|NP_735368.1| Unknown [Streptococcus agalactiae NEM316]
 emb|CAD46578.1| Unknown [Streptococcus agalactiae NEM316]
          Length = 217

 Score = 70.5 bits (171), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 33/54 (61%), Positives = 43/54 (79%), Gaps = 1/54 (1%)

Query: 3   KEYRDYSKGTAVNHFYEKLLKLKDLMNTPYGRKLAEERHAFMESFLEQFYKEWN 56
           +EYR+  + TA+ HFYEKLLKLKDLMNT  G+ LA++RH F+E +L +FY EWN
Sbjct: 162 EEYRN-GQDTAIMHFYEKLLKLKDLMNTKQGKMLAQKRHDFLELYLAEFYAEWN 214


>ref|NP_687922.1| HD domain protein [Streptococcus agalactiae 2603V/R]
 gb|AAM99794.1| HD domain protein [Streptococcus agalactiae 2603V/R]
          Length = 203

 Score = 70.1 bits (170), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 33/54 (61%), Positives = 43/54 (79%), Gaps = 1/54 (1%)

Query: 3   KEYRDYSKGTAVNHFYEKLLKLKDLMNTPYGRKLAEERHAFMESFLEQFYKEWN 56
           +EYR+  + TA+ HFYEKLLKLKDLMNT  G+ LA++RH F+E +L +FY EWN
Sbjct: 148 EEYRN-GQDTAIIHFYEKLLKLKDLMNTKQGKMLAQKRHDFLELYLAEFYAEWN 200


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.316    0.133    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 108,684,465
Number of extensions: 3483441
Number of successful extensions: 8632
Number of sequences better than 1.0e-05: 31
Number of HSP's gapped: 8633
Number of HSP's successfully gapped: 31
Length of query: 66
Length of database: 757,237,578
Length adjustment: 37
Effective length of query: 29
Effective length of database: 656,778,915
Effective search space: 19046588535
Effective search space used: 19046588535
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 120 (50.8 bits)