BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0317.0009.p (149 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value emb|CAA09426.1| arginine repressor [Geobacillus stearothermophilus] 195 3e-49 sp|O31408|ARGR_BACST Arginine repressor >gi|2369706|emb|CAA70737... 191 6e-48 pdb|1B4A|A Chain A, Structure Of The Arginine Repressor From Bac... 191 6e-48 ref|NP_243643.1| transcriptional regulator of arginine metabolis... 187 6e-47 ref|NP_658211.1| Arg_repressor, R repressor, DNA binding domain ... 183 9e-46 >emb|CAA09426.1| arginine repressor [Geobacillus stearothermophilus] Length = 149 Score = 195 bits (496), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 90/147 (61%), Positives = 113/147 (76%) Query: 2 KGHRHIKIRXXXXXXXXXXXDDLVEALREAGFQVTQATVSRDIKELLLIKVPMDDGRYKY 61 KG RHIKIR D+LV+ L++AGF VTQATVSRDIKEL L+KVPM +GRYKY Sbjct: 3 KGQRHIKIREIIMNHEIETQDELVDMLKKAGFNVTQATVSRDIKELQLVKVPMANGRYKY 62 Query: 62 SLPTDQRYNPTQKLKRVLVDNFVHIDSSGNLVVMKCLPGTANSVAALIDNIDWPQIMGTI 121 SLP+DQR+NPTQKLKR L+D FV +D SGNL+V+K LPG A+++ L+DN+DW +I+GTI Sbjct: 63 SLPSDQRFNPTQKLKRALMDAFVKLDGSGNLLVLKTLPGNAHAIGVLLDNLDWNEIVGTI 122 Query: 122 SGDDTILIICRQPEDSHDVISQIMGYI 148 GDDT LIICR ED+ V Q++G + Sbjct: 123 CGDDTCLIICRTAEDAEKVSGQLLGML 149 >sp|O31408|ARGR_BACST Arginine repressor emb|CAA70737.1| arginine repressor [Geobacillus stearothermophilus] Length = 149 Score = 191 bits (484), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 87/147 (59%), Positives = 113/147 (76%) Query: 2 KGHRHIKIRXXXXXXXXXXXDDLVEALREAGFQVTQATVSRDIKELLLIKVPMDDGRYKY 61 KG RHIKIR D+LV+ LREAGF VTQATVSRDIKE+ L+KVPM +GRYKY Sbjct: 3 KGQRHIKIREIIMSNDIETQDELVDRLREAGFNVTQATVSRDIKEMQLVKVPMANGRYKY 62 Query: 62 SLPTDQRYNPTQKLKRVLVDNFVHIDSSGNLVVMKCLPGTANSVAALIDNIDWPQIMGTI 121 SLP+DQR+NP QKLKR LVD F+ +D +GNL+V++ LPG A+++ L+DN+DW +I+GTI Sbjct: 63 SLPSDQRFNPLQKLKRALVDVFIKLDGTGNLLVLRTLPGNAHAIGVLLDNLDWDEIVGTI 122 Query: 122 SGDDTILIICRQPEDSHDVISQIMGYI 148 GDDT LIICR P+D+ V +Q++ + Sbjct: 123 CGDDTCLIICRTPKDAKKVSNQLLSML 149 >pdb|1B4A|A Chain A, Structure Of The Arginine Repressor From Bacillus Stearothermophilus pdb|1B4A|B Chain B, Structure Of The Arginine Repressor From Bacillus Stearothermophilus pdb|1B4A|C Chain C, Structure Of The Arginine Repressor From Bacillus Stearothermophilus pdb|1B4A|D Chain D, Structure Of The Arginine Repressor From Bacillus Stearothermophilus pdb|1B4A|E Chain E, Structure Of The Arginine Repressor From Bacillus Stearothermophilus pdb|1B4A|F Chain F, Structure Of The Arginine Repressor From Bacillus Stearothermophilus Length = 149 Score = 191 bits (484), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 87/147 (59%), Positives = 113/147 (76%) Query: 2 KGHRHIKIRXXXXXXXXXXXDDLVEALREAGFQVTQATVSRDIKELLLIKVPMDDGRYKY 61 KG RHIKIR D+LV+ LREAGF VTQATVSRDIKE+ L+KVPM +GRYKY Sbjct: 3 KGQRHIKIREIIMSNDIETQDELVDRLREAGFNVTQATVSRDIKEMQLVKVPMANGRYKY 62 Query: 62 SLPTDQRYNPTQKLKRVLVDNFVHIDSSGNLVVMKCLPGTANSVAALIDNIDWPQIMGTI 121 SLP+DQR+NP QKLKR LVD F+ +D +GNL+V++ LPG A+++ L+DN+DW +I+GTI Sbjct: 63 SLPSDQRFNPLQKLKRALVDVFIKLDGTGNLLVLRTLPGNAHAIGVLLDNLDWDEIVGTI 122 Query: 122 SGDDTILIICRQPEDSHDVISQIMGYI 148 GDDT LIICR P+D+ V +Q++ + Sbjct: 123 CGDDTCLIICRTPKDAKKVSNQLLSML 149 >ref|NP_243643.1| transcriptional regulator of arginine metabolism expression [Bacillus halodurans] sp|Q9K973|ARGR_BACHD Arginine repressor pir||A83997 transcription regulator of arginine metabolism expression ahrC [imported] - Bacillus halodurans (strain C-125) dbj|BAB06496.1| transcriptional regulator of arginine metabolism expression [Bacillus halodurans] Length = 149 Score = 187 bits (475), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 91/147 (61%), Positives = 109/147 (74%) Query: 2 KGHRHIKIRXXXXXXXXXXXDDLVEALREAGFQVTQATVSRDIKELLLIKVPMDDGRYKY 61 KG RHIKIR D+LVE L+ AG+ VTQATVSRDIKEL L+KVPM DGRYKY Sbjct: 3 KGQRHIKIREIIANNDVETQDELVEQLKAAGYNVTQATVSRDIKELHLVKVPMMDGRYKY 62 Query: 62 SLPTDQRYNPTQKLKRVLVDNFVHIDSSGNLVVMKCLPGTANSVAALIDNIDWPQIMGTI 121 SLP DQR+NP QKLKR LVD+FV ID + NL+VMK LPG A+++ ALIDN+DW +IMGTI Sbjct: 63 SLPADQRFNPLQKLKRGLVDSFVSIDRTDNLIVMKTLPGNAHAIGALIDNLDWTEIMGTI 122 Query: 122 SGDDTILIICRQPEDSHDVISQIMGYI 148 GDDTILIIC+ +D V + + + Sbjct: 123 CGDDTILIICKDKQDGPVVTERFLNML 149 >ref|NP_658211.1| Arg_repressor, R repressor, DNA binding domain [Bacillus anthracis A2012] Length = 149 Score = 183 bits (465), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 87/136 (63%), Positives = 108/136 (79%) Query: 2 KGHRHIKIRXXXXXXXXXXXDDLVEALREAGFQVTQATVSRDIKELLLIKVPMDDGRYKY 61 KG RHIKIR D+LV+ LR GF VTQATVSRDIKEL L+KVP+ DGRYKY Sbjct: 3 KGQRHIKIREXIANKEIETQDELVDILRNEGFNVTQATVSRDIKELHLVKVPLHDGRYKY 62 Query: 62 SLPTDQRYNPTQKLKRVLVDNFVHIDSSGNLVVMKCLPGTANSVAALIDNIDWPQIMGTI 121 SLP DQR+NP QKLKR LVD+FV +D++G+++V+K LPG A+S+ ALID+++W +I+GTI Sbjct: 63 SLPADQRFNPLQKLKRNLVDSFVKLDTAGHMLVLKTLPGNAHSLGALIDHLEWDEIIGTI 122 Query: 122 SGDDTILIICRQPEDS 137 GDDT LIICR PED+ Sbjct: 123 CGDDTCLIICRTPEDT 138 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.321 0.138 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 197,142,414 Number of extensions: 7200957 Number of successful extensions: 15880 Number of sequences better than 1.0e-05: 123 Number of HSP's gapped: 15815 Number of HSP's successfully gapped: 123 Length of query: 149 Length of database: 757,237,578 Length adjustment: 108 Effective length of query: 41 Effective length of database: 464,006,886 Effective search space: 19024282326 Effective search space used: 19024282326 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 120 (50.8 bits)