BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0317.0003.p
         (98 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_680811.1| geranylgeranyl pyrophosphate synthase [Thermosy...    66   3e-10
dbj|BAA82613.1| geranylgeranyl diphosphate synthase (SelGGPS) [S...    64   7e-10
ref|ZP_00081147.1| COG0142: Geranylgeranyl pyrophosphate synthas...    64   1e-09
ref|NP_952815.1| geranyltranstransferase [Geobacter sulfurreduce...    62   5e-09
gb|EAI73873.1| unknown [environmental sequence]                        60   2e-08

>ref|NP_680811.1| geranylgeranyl pyrophosphate synthase [Thermosynechococcus
          elongatus BP-1]
 dbj|BAC07573.1| geranylgeranyl pyrophosphate synthase [Thermosynechococcus
          elongatus BP-1]
          Length = 307

 Score = 65.9 bits (159), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 36/76 (47%), Positives = 49/76 (64%), Gaps = 5/76 (6%)

Query: 9  EAEPAGTSLRQPLKEYIAEISSLVMSELEAALPEEWSVPGNLKDAMNYSLQAGGKRLRPL 68
          +  PAGT     LK Y+ E  +LV + LEA++P  +  P  + DAM YSL AGGKRLRP+
Sbjct: 8  QVHPAGTF---DLKAYLKERQALVEAALEASIPVAY--PEKIYDAMRYSLMAGGKRLRPI 62

Query: 69 LVIAACEALGGSRQAA 84
          L +A CE +GG+ + A
Sbjct: 63 LCLATCELMGGTVEMA 78


>dbj|BAA82613.1| geranylgeranyl diphosphate synthase (SelGGPS) [Synechococcus
          elongatus]
          Length = 307

 Score = 64.3 bits (155), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 35/76 (46%), Positives = 49/76 (64%), Gaps = 5/76 (6%)

Query: 9  EAEPAGTSLRQPLKEYIAEISSLVMSELEAALPEEWSVPGNLKDAMNYSLQAGGKRLRPL 68
          +  PAGT     +K Y+ E  +LV + LEA++P  +  P  + DAM YSL AGGKRLRP+
Sbjct: 8  QVHPAGTF---DVKAYLKERQALVEAALEASIPVAY--PEKIYDAMRYSLMAGGKRLRPI 62

Query: 69 LVIAACEALGGSRQAA 84
          L +A CE +GG+ + A
Sbjct: 63 LCLATCELMGGTVEMA 78


>ref|ZP_00081147.1| COG0142: Geranylgeranyl pyrophosphate synthase [Geobacter
          metallireducens]
          Length = 297

 Score = 63.5 bits (153), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/60 (50%), Positives = 44/60 (73%)

Query: 21 LKEYIAEISSLVMSELEAALPEEWSVPGNLKDAMNYSLQAGGKRLRPLLVIAACEALGGS 80
          LK Y+ E  ++V   LE +LP E  +P ++  AM YS+ AGGKR+RP+L++AACEA+GG+
Sbjct: 3  LKNYLKERCAIVDEALERSLPGEGDLPVSVHRAMRYSVFAGGKRIRPVLMLAACEAVGGT 62


>ref|NP_952815.1| geranyltranstransferase [Geobacter sulfurreducens PCA]
 gb|AAR35142.1| geranyltranstransferase [Geobacter sulfurreducens PCA]
          Length = 297

 Score = 61.6 bits (148), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 30/60 (50%), Positives = 42/60 (70%)

Query: 21 LKEYIAEISSLVMSELEAALPEEWSVPGNLKDAMNYSLQAGGKRLRPLLVIAACEALGGS 80
          LK Y+ E  +LV   LE  LP E  +P ++  AM YS+ AGGKR+RP+L++AAC+A+GG 
Sbjct: 3  LKGYLKERCALVDEALERHLPAEDELPSSVHRAMRYSVFAGGKRVRPILMLAACDAVGGD 62


>gb|EAI73873.1| unknown [environmental sequence]
          Length = 296

 Score = 59.7 bits (143), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/60 (46%), Positives = 42/60 (70%)

Query: 23 EYIAEISSLVMSELEAALPEEWSVPGNLKDAMNYSLQAGGKRLRPLLVIAACEALGGSRQ 82
          +Y++E   L+   + + LP+  + P ++ +AM YSL AGGKRLRP+LV+AA EA+GG R 
Sbjct: 5  QYLSEGKKLIDERMLSFLPQGKAYPESIHEAMRYSLLAGGKRLRPVLVMAAAEAVGGDRH 64


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.314    0.131    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 144,221,101
Number of extensions: 4845099
Number of successful extensions: 9243
Number of sequences better than 1.0e-05: 38
Number of HSP's gapped: 9256
Number of HSP's successfully gapped: 38
Length of query: 98
Length of database: 757,237,578
Length adjustment: 66
Effective length of query: 32
Effective length of database: 578,041,044
Effective search space: 18497313408
Effective search space used: 18497313408
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 120 (50.8 bits)