BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0315.0004.p
         (45 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_241505.1| BH0639~unknown conserved protein in B. subtilis...    77   9e-14
ref|NP_388540.1| yerC [Bacillus subtilis] >gi|7474988|pir||B6979...    70   1e-11
ref|NP_691674.1| hypothetical protein OB0753 [Oceanobacillus ihe...    67   1e-10
ref|NP_349282.1| Uncharcterized protein, YECD B.subtilis homolog...    64   1e-09
ref|ZP_00182536.1| hypothetical protein Exigu212901 [Exiguobacte...    64   1e-09

>ref|NP_241505.1| BH0639~unknown conserved protein in B. subtilis [Bacillus
          halodurans]
 pir||G83729 hypothetical protein BH0639 [imported] - Bacillus halodurans
          (strain C-125)
 dbj|BAB04358.1| BH0639~unknown conserved protein in B. subtilis [Bacillus
          halodurans]
          Length = 100

 Score = 77.4 bits (189), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 35/43 (81%), Positives = 41/43 (95%)

Query: 1  MLGKGSTYNQIEAETGASTATISRVKRCLNYGNDGYKLTLERL 43
          ML +G+TY++IE ETGASTATISRVKRCLNYGNDGYK+TLER+
Sbjct: 52 MLREGATYHKIETETGASTATISRVKRCLNYGNDGYKMTLERI 94


>ref|NP_388540.1| yerC [Bacillus subtilis]
 pir||B69794 hypothetical protein yerC - Bacillus subtilis
 gb|AAB72190.1| YecD [Bacillus subtilis]
 emb|CAA75549.1| YerC protein [Bacillus subtilis]
 emb|CAB12478.1| yerC [Bacillus subtilis subsp. subtilis str. 168]
          Length = 104

 Score = 70.5 bits (171), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 31/43 (72%), Positives = 39/43 (90%)

Query: 1  MLGKGSTYNQIEAETGASTATISRVKRCLNYGNDGYKLTLERL 43
          ML +G+TY++IE ETGASTATISRVKRCLNYGND Y++ L+R+
Sbjct: 52 MLREGNTYHKIETETGASTATISRVKRCLNYGNDAYEMALDRV 94


>ref|NP_691674.1| hypothetical protein OB0753 [Oceanobacillus iheyensis HTE831]
 dbj|BAC12709.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
          Length = 98

 Score = 67.0 bits (162), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 30/44 (68%), Positives = 37/44 (84%)

Query: 1  MLGKGSTYNQIEAETGASTATISRVKRCLNYGNDGYKLTLERLG 44
          ML +G+TY+ IE ET ASTATISRV+RC+NYG+DGY L LER+ 
Sbjct: 52 MLTEGNTYSAIEKETKASTATISRVRRCINYGSDGYNLVLERMN 95


>ref|NP_349282.1| Uncharcterized protein, YECD B.subtilis homolog [Clostridium
          acetobutylicum]
 pir||C97229 uncharcterized protein, YECD B. subtilis homolog [imported] -
          Clostridium acetobutylicum
 gb|AAK80622.1| Uncharcterized protein, YECD B.subtilis homolog [Clostridium
          acetobutylicum]
          Length = 98

 Score = 63.9 bits (154), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/45 (64%), Positives = 35/45 (77%)

Query: 1  MLGKGSTYNQIEAETGASTATISRVKRCLNYGNDGYKLTLERLGR 45
          ML +  TY+ I AETGASTATISRV RC+NYG+DGY + L RL +
Sbjct: 54 MLKEKHTYSDISAETGASTATISRVNRCINYGSDGYNIVLRRLEK 98


>ref|ZP_00182536.1| hypothetical protein Exigu212901 [Exiguobacterium sp. 255-15]
          Length = 104

 Score = 63.9 bits (154), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/43 (72%), Positives = 36/43 (83%)

Query: 2  LGKGSTYNQIEAETGASTATISRVKRCLNYGNDGYKLTLERLG 44
          L +G+TY++IE  TGASTATISRVKRCLNYG+ GY L L RLG
Sbjct: 53 LREGNTYHKIEKATGASTATISRVKRCLNYGSGGYDLALARLG 95


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.313    0.131    0.367 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 62,140,987
Number of extensions: 1406429
Number of successful extensions: 2853
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 2853
Number of HSP's successfully gapped: 12
Length of query: 45
Length of database: 757,237,578
Length adjustment: 18
Effective length of query: 27
Effective length of database: 708,365,796
Effective search space: 19125876492
Effective search space used: 19125876492
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 120 (50.8 bits)