BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0312.0002.p
         (368 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_00037673.1| hypothetical protein [Enterococcus faecium]         94   6e-18

>ref|ZP_00037673.1| hypothetical protein [Enterococcus faecium]
          Length = 475

 Score = 93.6 bits (231), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 69/272 (25%), Positives = 120/272 (44%), Gaps = 18/272 (6%)

Query: 27  TISEALSQSRSSSFGVVYKNGKFTANDPLSFFGRKLPDPE-LTFDTANNKTLVNVHMNGS 85
           TI+E +   +   F     +G  T ++  S++ R +PD + LTFD +N KTL N+ + G+
Sbjct: 2   TINEVIYSPKHPFFNAELNDGNVTTSNEYSYY-RNIPDVKGLTFDVSNQKTLANLDVCGT 60

Query: 86  IKNVTVYNGSYSSDNIPGVWMCKDFREAGPYAYSLELGGLHYHLGSDDLAYSTSLLDNLF 145
           I+ +T Y  +  ++  PGVW+ K   +    +  +E+ G+ YHL   D      ++ +  
Sbjct: 61  IQTLTFYRENLLTEEKPGVWVNKQLSQTNSLSLKVEVNGIVYHLSESDHRIEVDVIQDCL 120

Query: 146 PVTEYQLGAIKATLLVYTPVSADGSQRLRGLVYGLQLENQSGQTIAGQVTPPPA--DTLP 203
           P   +     K  ++ + P+ A+  +RL  LV  + + N++ +++   V   P+  +   
Sbjct: 121 PRYIHHYSTFKVIVVSFAPILAN--KRLSMLVQQVYIVNETHESLQVSVKDVPSYQEKYS 178

Query: 204 DQLFSGPEFCVHVPGHKVDVNGTVPVSLAPGQTLWVPAVIYPAGDPCPRIIGEKGTLYWL 263
           DQ        +   G+K  +      S A        A + P          E     WL
Sbjct: 179 DQ----QNVLISQKGNKDTIAQQEVASFA-------IAFVDPNAFEEVMTFQESDIEKWL 227

Query: 264 NETWAYFRGITGRLTMEEDPFAAEFYERALLQ 295
            ET  YF  + G+L+M  D      Y RAL Q
Sbjct: 228 KETLNYFAQLFGQLSMPNDR-VVHLYRRALYQ 258


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.319    0.136    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 580,161,674
Number of extensions: 24535086
Number of successful extensions: 48366
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 48365
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 757,237,578
Length adjustment: 127
Effective length of query: 241
Effective length of database: 412,420,005
Effective search space: 99393221205
Effective search space used: 99393221205
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)