BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0312.0001.p
         (401 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_00036383.1| hypothetical protein [Enterococcus faecium]        239   7e-62
ref|ZP_00037673.1| hypothetical protein [Enterococcus faecium]         86   2e-15

>ref|ZP_00036383.1| hypothetical protein [Enterococcus faecium]
          Length = 544

 Score =  239 bits (611), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 127/347 (36%), Positives = 189/347 (54%), Gaps = 17/347 (4%)

Query: 5   YYRTTGDKQLFWNRSGIHESICSLLEATLLTRKEEDPWLFPSVWLSDAYSLGDYHTGSNV 64
           Y+  TGD + F     +  +   ++E  L  R+  +P LFPSVWLSDA++LG YHTGSN+
Sbjct: 190 YFEHTGDTKFFERCPQVLLNASRIIEDILAQRRSGEPMLFPSVWLSDAFALGKYHTGSNL 249

Query: 65  IAWTAFVHYARIAEEVFGDTARAERYRTIAGRIRADLERLATAEGPFGLQYAEGISSSGD 124
             W A +  A I E +    + ++RY+ IA +++  + +  T +GPFG Q+ EGI    +
Sbjct: 250 CLWKACIGLAEIFEAL-EQLSLSKRYKNIACKLKESICKQMTIDGPFGEQFLEGIGDE-E 307

Query: 125 KLKDNAGKYTGKYADFGMQFIENLTAEGQINLLHHDGEESDTILMPLYGYTSYDNETYRH 184
           K   +   Y     + G+ F+ ++  +G+INLL HDGEESDT LMP Y +    +  Y++
Sbjct: 308 KTTYSVKHYQKPILEQGLIFLSDVIVDGKINLLMHDGEESDTTLMPFYQFLDNKDHLYQN 367

Query: 185 YMQFSLSPHNPTYNPESRGIQWGDHSACTFPGYMSGMGMITDAASLSGEDGYLTRIRQLT 244
            M FS S  NPTY+ E +GI WG  S  TFPG+++ +      + L     ++TR+ +L 
Sbjct: 368 TMAFSASSFNPTYSEEIKGITWGLESGATFPGFITVL-----MSELHNPQAFVTRLEELI 422

Query: 245 ---DADGSLWWWPYNNGAAYGDVVRHNNCGKCGWASGVFAGLFVSEILGLAYDASAXXXX 301
              D DGS WWWPY   A  G+VVR   CGKCGWASG+F  L +S+  GL +        
Sbjct: 423 CLADLDGSWWWWPYRLEAQQGEVVRDFGCGKCGWASGLFVSLMISQYFGLKFKKGV---L 479

Query: 302 XXXXXXXXXXTWEHVKLGSGSFSVAYRKTDSSVEASIQNLCTKTVTV 348
                     +W+++K G    S+   ++    E SI NL  K + +
Sbjct: 480 QIDPVDNLTFSWKNLKFGQAFISIECTQS----ELSISNLSEKPLKI 522


>ref|ZP_00037673.1| hypothetical protein [Enterococcus faecium]
          Length = 475

 Score = 85.5 bits (210), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 41/108 (37%), Positives = 63/108 (58%), Gaps = 1/108 (0%)

Query: 5   YYRTTGDKQLFWNRSGIHESICSLLEATLLTRKEEDPWLFPSVWLSDAYSLGDYHTGSNV 64
           Y+  TGD + F     +  +   ++E  L  R+  +P LFPSVWLSDA++LG YHTGSN+
Sbjct: 345 YFEHTGDTKFFERCPQVLLNASRIIEDILAQRRSGEPMLFPSVWLSDAFALGKYHTGSNL 404

Query: 65  IAWTAFVHYARIAEEVFGDTARAERYRTIAGRIRADLERLATAEGPFG 112
             W A +  A I  E     + ++RY+ IA +++  + +  T +GPFG
Sbjct: 405 CLWKACIGLAEIF-EALEQLSLSKRYKNIACKLKESICKQMTIDGPFG 451


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.318    0.134    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 617,767,691
Number of extensions: 25832137
Number of successful extensions: 53480
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 53476
Number of HSP's successfully gapped: 2
Length of query: 401
Length of database: 757,237,578
Length adjustment: 128
Effective length of query: 273
Effective length of database: 409,704,906
Effective search space: 111849439338
Effective search space used: 111849439338
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 127 (53.5 bits)