BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0311.0007.p (129 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_349432.1| Nudix (MutT) family hydrolase/pyrophosphatase [... 112 2e-24 ref|NP_782487.1| mutator mutT protein; 7,8-dihydro-8-oxoguanine-... 101 5e-21 ref|NP_419650.1| mutator mutT protein [Caulobacter crescentus CB... 97 1e-19 ref|ZP_00097144.1| COG0494: NTP pyrophosphohydrolases including ... 97 2e-19 ref|ZP_00060440.1| COG0494: NTP pyrophosphohydrolases including ... 94 7e-19 >ref|NP_349432.1| Nudix (MutT) family hydrolase/pyrophosphatase [Clostridium acetobutylicum] pir||A97248 nudix (MutT) family hydrolase/pyrophosphatase [imported] - Clostridium acetobutylicum gb|AAK80772.1| Nudix (MutT) family hydrolase/pyrophosphatase [Clostridium acetobutylicum] Length = 128 Score = 112 bits (280), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 54/126 (42%), Positives = 81/126 (64%) Query: 1 VIEVAAAIIHNDEGCILIARRRQGKSQAGLWEFPGGKLEDGEDAPACLRRELMEEMGIAI 60 +++V AAI+ N+ ILI RR +GK+ AG +EFPGG++E+GE L RE+ EE+ + I Sbjct: 1 MLDVVAAILTNENNEILITRRAEGKNNAGYFEFPGGRIENGETRREALAREVKEELDVDI 60 Query: 61 LPYAAFGVNEHDYDGFTIRLMAWEAEFLEGRITLSDHDAFRWVTAKELDGFAFAPADIPF 120 FG + +D DG ++L A++ + + G I LS HD ++WV +EL F F+PAD Sbjct: 61 AVGEYFGESTYDNDGLGVKLNAFKGKIISGDIKLSVHDEYKWVRKEELKEFKFSPADEKL 120 Query: 121 VNRLLE 126 VN L+E Sbjct: 121 VNELME 126 >ref|NP_782487.1| mutator mutT protein; 7,8-dihydro-8-oxoguanine-triphosphatase [Clostridium tetani E88] gb|AAO36424.1| mutator mutT protein; 7,8-dihydro-8-oxoguanine-triphosphatase [Clostridium tetani E88] Length = 139 Score = 101 bits (252), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 50/126 (39%), Positives = 70/126 (55%) Query: 1 VIEVAAAIIHNDEGCILIARRRQGKSQAGLWEFPGGKLEDGEDAPACLRRELMEEMGIAI 60 +I+V AAII N+ IL A R S LWEFPGGK+E GE + RE+ EE+ I Sbjct: 11 LIKVIAAIIENENNEILCALRSTKMSLPNLWEFPGGKIEKGESLAEAITREIKEELNCTI 70 Query: 61 LPYAAFGVNEHDYDGFTIRLMAWEAEFLEGRITLSDHDAFRWVTAKELDGFAFAPADIPF 120 F N H+YD F + L + EG+ T ++HD W+ + L +APADIP Sbjct: 71 SFIDVFNENTHEYDKFIVNLTTARCKLTEGQPTANEHDKLIWLPKENLSSLNWAPADIPA 130 Query: 121 VNRLLE 126 V++L++ Sbjct: 131 VDQLIK 136 >ref|NP_419650.1| mutator mutT protein [Caulobacter crescentus CB15] pir||F87352 mutator mutT protein [imported] - Caulobacter crescentus gb|AAK22818.1| mutator mutT protein [Caulobacter crescentus CB15] Length = 134 Score = 97.1 bits (240), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 52/126 (41%), Positives = 72/126 (57%), Gaps = 2/126 (1%) Query: 1 VIEVAAAIIHNDEGCILIARRRQGKSQAGLWEFPGGKLEDGEDAPACLRRELMEEMGIAI 60 ++ VAAA + + +G +LI +R QGK AGLWEFPGGK+E GE CL REL EE+GI + Sbjct: 5 IVLVAAAALIDVDGRVLICQRPQGKQLAGLWEFPGGKVEAGETPEQCLIRELQEELGIKV 64 Query: 61 LP--YAAFGVNEHDYDGFTIRLMAWEAEFLEGRITLSDHDAFRWVTAKELDGFAFAPADI 118 A F H Y+ F + + + EG++T +H+A WV +L + PAD Sbjct: 65 AQACLAPFVFASHSYESFHLLMPLYLLRRWEGQVTRKEHEALAWVKPDKLSDYPMPPADE 124 Query: 119 PFVNRL 124 P V L Sbjct: 125 PLVAWL 130 >ref|ZP_00097144.1| COG0494: NTP pyrophosphohydrolases including oxidative damage repair enzymes [Desulfitobacterium hafniense] Length = 129 Score = 96.7 bits (239), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 51/122 (41%), Positives = 70/122 (57%), Gaps = 1/122 (0%) Query: 3 EVAAAIIHNDEGCILIARRRQGKSQAGLWEFPGGKLEDGEDAPACLRRELMEEMGIAILP 62 +V AAII + ILIARR G+ G WEFPGGK+E GE ACL+REL EE GI Sbjct: 3 DVTAAIIIKGQN-ILIARRAPGEQHGGSWEFPGGKVEPGETPEACLKRELGEEFGIEAEV 61 Query: 63 YAAFGVNEHDYDGFTIRLMAWEAEFLEGRITLSDHDAFRWVTAKELDGFAFAPADIPFVN 122 + ++Y +IRL+A++ + +G I L HD + WV +L + PAD+P + Sbjct: 62 QEYISSSLYEYPQGSIRLLAYQVKIRQGEIQLRVHDRYEWVGVTQLLNYELLPADVPIAH 121 Query: 123 RL 124 L Sbjct: 122 YL 123 >ref|ZP_00060440.1| COG0494: NTP pyrophosphohydrolases including oxidative damage repair enzymes [Clostridium thermocellum ATCC 27405] Length = 131 Score = 94.4 bits (233), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 48/125 (38%), Positives = 72/125 (57%), Gaps = 1/125 (0%) Query: 2 IEVAAAIIHNDEGCILIARRRQGKSQAGLWEFPGGKLEDGEDAPACLRRELMEEMGIAIL 61 I V A II N++ +LI RR ++ AG WEFPGGK+E E CL REL EE+ I + Sbjct: 4 IRVTAGIIINNDK-VLITRRAPNENFAGGWEFPGGKIEADETPEECLARELKEELNITVS 62 Query: 62 PYAAFGVNEHDYDGFTIRLMAWEAEFLEGRITLSDHDAFRWVTAKELDGFAFAPADIPFV 121 +DYD +I L+A+ ++G I +S HD ++WV ++L + PAD+P Sbjct: 63 VEGFCTEVPYDYDDISIDLIAYYCTIVDGEIQMSVHDKYKWVKIEDLLNYDLLPADVPIA 122 Query: 122 NRLLE 126 R+++ Sbjct: 123 KRVVK 127 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.324 0.142 0.443 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 201,588,652 Number of extensions: 7787893 Number of successful extensions: 15153 Number of sequences better than 1.0e-05: 246 Number of HSP's gapped: 15176 Number of HSP's successfully gapped: 246 Length of query: 129 Length of database: 757,237,578 Length adjustment: 92 Effective length of query: 37 Effective length of database: 507,448,470 Effective search space: 18775593390 Effective search space used: 18775593390 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 120 (50.8 bits)