BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0311.0006.p (238 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_924653.1| unknown protein [Gloeobacter violaceus] >gi|352... 72 1e-11 gb|EAI08042.1| unknown [environmental sequence] 62 9e-09 ref|NP_628212.1| conserved hypothetical protein [Streptomyces co... 60 4e-08 ref|NP_822358.1| hypothetical protein [Streptomyces avermitilis ... 59 7e-08 ref|NP_939578.1| Putative secreted protein [Corynebacterium diph... 57 4e-07 >ref|NP_924653.1| unknown protein [Gloeobacter violaceus] dbj|BAC89648.1| glr1707 [Gloeobacter violaceus PCC 7421] Length = 231 Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 37/106 (34%), Positives = 62/106 (58%), Gaps = 4/106 (3%) Query: 115 GEGTVEMSALDSGNAQRDEHVKGADFLSVTEFPQSTFTVKSFSELP--AEWTE-GTAVPV 171 GE + ++A+DSGN RD ++G +FL ++P++TF V P AEW + G Sbjct: 99 GEIQIGLAAIDSGNGARDARMRG-EFLQTEKYPKATFVVTKLEGFPSVAEWKKWGLKQTG 157 Query: 172 QLQGTMTVKGIEKEVTFDSQAVYSGGQLMLSGTTTVTFEDFGMANP 217 ++ G +T+K + + V F+++AVY G +L +SG DFG++ P Sbjct: 158 KIHGDLTIKEVTRPVVFEAEAVYLGTELKVSGKGQTKMTDFGISPP 203 >gb|EAI08042.1| unknown [environmental sequence] Length = 186 Score = 62.4 bits (150), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 40/123 (32%), Positives = 65/123 (52%), Gaps = 18/123 (14%) Query: 100 TGTWNVNLDDAGAMTGEGTVEMSA--LDSGNAQRDEHVKGADFLSVTEFPQSTFTVKSFS 157 +GT++ +DDA + + E+ A +DS + RD+H++ DFL V +FP+ TF + Sbjct: 52 SGTFS--MDDANPAAAKASFEIDAASVDSNHEPRDKHLRSPDFLDVKQFPKMTFVSSGY- 108 Query: 158 ELPAEWTEGTAVPVQLQGTMTVKGIEKEVTFDSQAV------YSGGQLMLSGTTTVTFED 211 EGT L+GT+T+ G+ KEV FD + + G + + TTT+ D Sbjct: 109 -------EGTKDKGVLKGTLTLHGVSKEVAFDLVHIGEGKDPWGGYRSGFNATTTIKRSD 161 Query: 212 FGM 214 FG+ Sbjct: 162 FGV 164 >ref|NP_628212.1| conserved hypothetical protein [Streptomyces coelicolor A3(2)] emb|CAC32370.1| conserved hypothetical protein [Streptomyces coelicolor A3(2)] Length = 273 Score = 60.1 bits (144), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 57/120 (47%), Gaps = 15/120 (12%) Query: 102 TWNVNLDDAGAMTGEGTVEMSALDSGNAQRDEHVKGADFLSVTEFPQSTFTVKSFSEL-P 160 T + DD G E ++ +++D+GN RD H++ ADFL V +P+ T+ SE+ P Sbjct: 128 TVEIAPDDVGKSRVEAVIKAASIDTGNGMRDTHLRSADFLDVERYPEITYRSTGVSEVGP 187 Query: 161 AEWTEGTAVPVQLQGTMTVKGIEKEVTFDSQAV------YSGGQLMLSGTTTVTFEDFGM 214 WT + G + + G+ +EV D + + G + TT + EDF M Sbjct: 188 DRWT--------VHGELGLHGVVREVDLDLAHLGTGADPWGGTRAAFRATTELHREDFAM 239 >ref|NP_822358.1| hypothetical protein [Streptomyces avermitilis MA-4680] dbj|BAC68893.1| hypothetical protein [Streptomyces avermitilis MA-4680] Length = 196 Score = 59.3 bits (142), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 42/144 (29%), Positives = 69/144 (47%), Gaps = 14/144 (9%) Query: 72 AWNIADTSKVYWSVTTSKETVNFVDPAVTGTWNVNLDDAGAMTGEGTVEMSALDSGNAQR 131 A +A K W + T K +++G V D G G T+E ++LD+ NA+R Sbjct: 41 ASTVAVRHKTMWGLVTVKGAFT----SISGQGEVEPD--GTAHGTITLEAASLDTKNAKR 94 Query: 132 DEHVKGADFLSVTEFPQSTFTVKSFSELPAEWTEGTAVPVQLQGTMTVKGIEKEVTFDSQ 191 D H++ ADF V P+ TF V++ P + VQ+ G +TV+GI + +F ++ Sbjct: 95 DTHLRSADFFDVENHPEITFAVRTAEAGPGD-------TVQVAGQLTVRGISRPQSFTAR 147 Query: 192 AVYSGGQ-LMLSGTTTVTFEDFGM 214 + + L+ T + FGM Sbjct: 148 VTRADSDAITLAAEFTADRDQFGM 171 >ref|NP_939578.1| Putative secreted protein [Corynebacterium diphtheriae] emb|CAE49749.1| Putative secreted protein [Corynebacterium diphtheriae] Length = 232 Score = 56.6 bits (135), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 27/114 (23%), Positives = 65/114 (57%), Gaps = 1/114 (0%) Query: 104 NVNLDDAGAMTGEGTVEMSALDSGNAQRDEHVKGADFLSVTEFPQSTFTVKSFSELPAEW 163 NV++ ++ +G T++M+ + + N +RD +V+ F ++P++++ + +L A Sbjct: 96 NVSVQNSHLTSGTVTIDMADIHTDNQKRDTNVRSKIF-ETAKYPEASYEISQAVDLSAVP 154 Query: 164 TEGTAVPVQLQGTMTVKGIEKEVTFDSQAVYSGGQLMLSGTTTVTFEDFGMANP 217 ++GT++ +++ G +T+ G+ ++VT D + G + +S T + DF + P Sbjct: 155 SDGTSIELKIPGKLTIHGVTRDVTPDFTIIRDGNTVKVSTTIPINRLDFNVHTP 208 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.310 0.126 0.357 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 264,451,199 Number of extensions: 9266769 Number of successful extensions: 17207 Number of sequences better than 1.0e-05: 24 Number of HSP's gapped: 17237 Number of HSP's successfully gapped: 24 Length of query: 238 Length of database: 757,237,578 Length adjustment: 122 Effective length of query: 116 Effective length of database: 425,995,500 Effective search space: 49415478000 Effective search space used: 49415478000 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 124 (52.4 bits)