BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0309.0001.p
         (111 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_980969.1| conserved hypothetical protein [Bacillus cereus...    69   3e-11
ref|ZP_00062526.1| COG4928: Predicted P-loop ATPase [Leuconostoc...    59   4e-08

>ref|NP_980969.1| conserved hypothetical protein [Bacillus cereus ATCC 10987]
 gb|AAS43577.1| conserved hypothetical protein [Bacillus cereus ATCC 10987]
          Length = 736

 Score = 68.9 bits (167), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 36/99 (36%), Positives = 57/99 (57%), Gaps = 6/99 (6%)

Query: 14  FRTESSLGKEGRDALNREAFAGHVAATIEKHTAKTNEGALTIGLYGPWGSGKTSIFDLME 73
           F +++ +     D L+RE F  HV +++ K     N   LTIG YG WG+GKTSIF +++
Sbjct: 148 FYSDNPVINNKDDRLHREKFVDHVISSLNK----INGENLTIGFYGKWGTGKTSIFKMIK 203

Query: 74  REFD--KSKSNPVIVRFQPWFFGKDYMNLIPEFXXXXIS 110
            + +   +K   +I  F+PW+FGK+   +I EF    +S
Sbjct: 204 EKIEDGNNKDEYLIFEFKPWYFGKEDHEIIVEFLEQLLS 242


>ref|ZP_00062526.1| COG4928: Predicted P-loop ATPase [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
          Length = 321

 Score = 58.5 bits (140), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 51/95 (53%), Gaps = 8/95 (8%)

Query: 14  FRTESSLGKEGRDALNREAFAGHVAATIEKHTAKTNEGALTIGLYGPWGSGKTSIFDL-M 72
           F  +  +     D L+R+ FA  +A +I  +       +  IGLYG WGSGKTS+ ++ +
Sbjct: 8   FNPDVPIKSSNDDLLDRKQFAKQLARSILDYK---QSDSFNIGLYGKWGSGKTSVLNMTV 64

Query: 73  EREFDKSKSN---PVIVRFQPWFFGKDYMNLIPEF 104
           E   D SK++   P I+RF PW F  D   LI +F
Sbjct: 65  EYLLDLSKNDVNKPEIIRFNPWMF-TDESQLINQF 98


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.315    0.133    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 159,272,876
Number of extensions: 5846129
Number of successful extensions: 28479
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 28485
Number of HSP's successfully gapped: 3
Length of query: 111
Length of database: 757,237,578
Length adjustment: 77
Effective length of query: 34
Effective length of database: 548,174,955
Effective search space: 18637948470
Effective search space used: 18637948470
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 120 (50.8 bits)