BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0308.0001.p
         (198 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_987820.1| transcriptional regulator PadR-like family [Met...    64   3e-09
ref|NP_825829.1| putative transcriptional regulator [Streptomyce...    58   1e-07
dbj|BAB72058.1| AclS [Streptomyces galilaeus]                          57   3e-07
ref|NP_617013.1| predicted protein [Methanosarcina acetivorans s...    52   6e-06

>ref|NP_987820.1| transcriptional regulator PadR-like family [Methanococcus
           maripaludis S2]
 emb|CAF30256.1| transcriptional regulator PadR-like family [Methanococcus
           maripaludis]
          Length = 183

 Score = 63.5 bits (153), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 88/172 (51%), Gaps = 4/172 (2%)

Query: 19  LSNVEFMLLQMIAEYRQASGYDIMKLVEQRGYKEWANIGTTSIYVGLKKLSDKGWISPET 78
           +SNVE  +L ++ E +   GY+I K++E+R  ++W  I  +SIY  LKKL +K  +  ET
Sbjct: 7   ISNVESAVLGLLLE-KPMYGYEIEKIIEERKMRQWTEIAFSSIYYVLKKLEEKQIVESET 65

Query: 79  ADEKSGKGPTPTRFVLTEEGIRKLRNEILDSLSSTRERDNRFDLGLAALPHIGKEEAVIA 138
            + K G+      +  T+ G   +R ++ + +S+  +  + FDLG++ L  + KEEAV  
Sbjct: 66  EN-KCGRARKI--YFATDLGKNIMREKVKELISNYEKTISGFDLGMSNLDILSKEEAVEC 122

Query: 139 LRKRLDFLGQASIKIRQKYESQGGASLPLNVRALFLHPFSLIESEQAFVSRL 190
               +  +     +I +   +    + P +V AL     + + +E+ F+   
Sbjct: 123 FENYIKSVEHVINRIYEVNSTVKKYNRPDHVLALSNRLLAHLNTEKEFIQEF 174


>ref|NP_825829.1| putative transcriptional regulator [Streptomyces avermitilis
           MA-4680]
 dbj|BAC72364.1| putative transcriptional regulator [Streptomyces avermitilis
           MA-4680]
          Length = 213

 Score = 57.8 bits (138), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/144 (22%), Positives = 73/144 (50%)

Query: 19  LSNVEFMLLQMIAEYRQASGYDIMKLVEQRGYKEWANIGTTSIYVGLKKLSDKGWISPET 78
           +S +  ++L  + ++ +A GY +   +E  G  EW+N    SIY  LK+++ +G +    
Sbjct: 1   MSAIRLLVLGAVRQHGRAHGYQVRNDLEYWGAHEWSNAKPGSIYHALKQMAKQGLLHAHE 60

Query: 79  ADEKSGKGPTPTRFVLTEEGIRKLRNEILDSLSSTRERDNRFDLGLAALPHIGKEEAVIA 138
               +  GP  T + +T EG  + R+ + +SL +  ++ +    G+  +  + ++EAV  
Sbjct: 61  IAPSTVGGPPRTEYEITPEGTEEFRSLLRESLVAYDQKMDIQSAGIGFIVDLARDEAVAL 120

Query: 139 LRKRLDFLGQASIKIRQKYESQGG 162
           L++R+  + +    + + Y  + G
Sbjct: 121 LKERIRRIEEWRAAVTEHYVPEDG 144


>dbj|BAB72058.1| AclS [Streptomyces galilaeus]
          Length = 213

 Score = 57.0 bits (136), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 63/129 (48%), Gaps = 4/129 (3%)

Query: 18  TLSNVEFMLLQMIAEYRQASGYDIMKLVEQRGYKEWANIGTTSIYVGLKKLSDKGWISPE 77
           T+S    ++L ++  + +  GY +   +   G  +WAN+   SIY  L++L+  G +   
Sbjct: 2   TMSATRLLVLGVVRGFGRTHGYRVRAELLSWGIDDWANVKPGSIYHALRQLAKDGLLEAS 61

Query: 78  TADEKSGKGPTPTRFVLTEEGIRKLRNEILDSLSSTRERDNRFDLGLAALPHIGKEEAVI 137
              +  G+      + +T EG  +    ++D+L     RD+    GLA +P + ++ AV 
Sbjct: 62  EIMDWPGR----VDYSVTPEGDEEFFRLLVDALERPERRDDTLRAGLALMPALSRDRAVA 117

Query: 138 ALRKRLDFL 146
           AL +RL  L
Sbjct: 118 ALSRRLGVL 126


>ref|NP_617013.1| predicted protein [Methanosarcina acetivorans str. C2A]
 gb|AAM05493.1| predicted protein [Methanosarcina acetivorans str. C2A]
          Length = 189

 Score = 52.4 bits (124), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 33/93 (35%), Positives = 51/93 (54%), Gaps = 4/93 (4%)

Query: 19  LSNVEFMLLQMIAEYRQASGYDIMKLVEQRGYKEWANIGTTSIYVGLKKLSDKGWISPET 78
           +S ++ ++L  + +    S Y++ K VE    K+W  +GT +IY  LKKLS KG++S  T
Sbjct: 1   MSPIDLIILGQLKK-EPMSAYELTKFVEHICVKKWLKVGTPTIYQNLKKLSSKGYLS--T 57

Query: 79  ADEKSGKGPTPTRFVLTEEGIRKLRNEILDSLS 111
           +  K G  P    + LTE G   L  E++D  S
Sbjct: 58  SAVKEGNMPEKVIYTLTESGSEYLL-ELMDQFS 89


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.319    0.136    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 278,802,538
Number of extensions: 10942190
Number of successful extensions: 26700
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 26705
Number of HSP's successfully gapped: 5
Length of query: 198
Length of database: 757,237,578
Length adjustment: 119
Effective length of query: 79
Effective length of database: 434,140,797
Effective search space: 34297122963
Effective search space used: 34297122963
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 123 (52.0 bits)